AMCG00018179 (pdpk1,LOC100380750)


Basic Information

Item Value
gene id AMCG00018179
gene name pdpk1,LOC100380750
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3900513 ~ 3910188 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018179
TATGATGCTGTTCCCATGCAATCCAGTGTCGTTATTTGTTCCTGCCCATCGCCATCAATGGTAAGAAATCACCCCGAGACCAGCTCGCCGCTCGCGATCCCAGGCGCCAGCAGCAGCCACTGTCCCACCATGGAGGCCCCCCCCGCCGAGCCCCGCATGTCCTCCAAATCCACGGAGAAGAACACCGAGCAGCGACCGCAATCCATACAGCCGCCCCCGTCGCGCAAGAAAAGGCCCGAAGACTTCAAATTTGGGAAGATTTTAGGAGAGGGTTCTTTTTCGACAGTGGTCCTGGCACGAGAACAGTCTACGTGCAAGGAATATGCAATTAAAATCCTGGAAAAGAGGCACATCATGAAGGAAAACAAGGCCCAATATgtaaagcgagagagagacgtTATGTCGGACCTCGATCATCCCTTCTTTGTCAAACTTTACTTTACGTTTCAAGACGATGAAAAGCTGTATTTCGGCCTCAGCTATGCGAAGAATGGAGAGCTGCTAAAGTACATCCGTAAAATAGGGTCTTTCGACGAGACGTGTACAAGATTCTACTCGGCTGAAATCGTCTGCGCGCTAGAATATTTACATGCTAAGGGGATTATTCACAGGGACCTTAAACCAGAAAATATTTTACTGAATGAGGACATGCACATTCAAATAACGGATTTTGGAACCGCAAAGCAATTATCTTCAGATAGTAAGCAAGCAAGGGCAAACTCCTTTGTGGGAACGGCACAATATGTTTCTCCAGAACTGCTGACAGAGAAATCTGCCTGCAAGAGAAATGAGTATCTAATATTCCAGAAGATAATTAAGTTGGAATACGAATTCCCAGAGAAGTTCTTTCCGAAAGCCAAGGATCTTGTAGAACAGCTTTTATCATTGGACCCCTCAAAGCGGATAGGCTGTGAGGAAGCGGGTGGCTATGATCCGCTAAAAGGTCACCCGTTCTTTGAGACGATCTCCTGGGACAACCTTCACCTGCAGACGCCCCCGAAGCTCACCCCCTACCTGCCCGCCATGTCCGAAGACGACGAGGATTGCTACGGAAATTACGATGACCTGCTCAGCCAGTTCGGGAGCATGCAGGTGGCCCAGTCCACCTCCCCCCTGCTGCCACTGCCCGGCTCCACGCCTCCGCAGAGGTCCAGCAGCAACATCGAGCAGTACATCCACGACCTGGACAACAACTCCTTCGAGCTGGACCTGCAGTTCTCCAACGAGGAGAAGCAGCTCCTCCTGGAGAAACAGACCAGTGGGAACCCATGGCATCaatttgtagaaaataatttaatactcAAGATGGGTCCAGTGGACAAGAGGAAGGGACTGTTCGCACGGCGCCGCCAGCTGCTCTTGACGGAGGGACCTCACCTCTACTACGTGGACCCTGTCAATAAAGTCCTGAAGGGGGAGATCCCGTGGTCTCCAGAGCTGCGCCCCGAGGCCAAGAACttcaaaaccttttttgttcATACACCTAACCGGACATATTACCTAATGGACCCTAGTGGAAACGCTGATAAATGGTGCAAGAAGATTCAAGAAGTGTGGCGGAAGATTTACCATAAGAACCAGAACACGGCCATCTAGGTCCCAGTGCCGGAAGGGTCCACTTGCTCGCGTTGTTGCCAGACCTCGCttcccgagagagagagagagagagagagatctccGTGACAGAGCAACAGACAGCCTTCCCTTAGTGCCCCTTGACCACGAGAGTTGTAACaccacgttttttttttttttttttttttaggaaggCGGGCTTCAGAATtaattttttcctctttaaaaacgaaaacaaaaaaaaaaaacagaaaaagaaaagaaaaaacaaaaaaacgcagACTAAATGGAATTCAGGGTTGCTTTGCTTGTTCTCTGTGCTCTTGTTGAGGCTTCAGATGCATATCGTCCCGTGCAAATGAAGATCTGGCTTTCGTGCTCTTCGGCTCTCCTGCTACAGCGACTCTATacgataagaaaaaaaaaaaaacgaaaaaaaaacttgtgtcGAATCCGCTTCACTAAGAGTAATGTATAAACCCACACGCACACCCAGAGTGTACAGCAGCCCTGTGaccccttttatttttattcatttttatccgaactgttttttttctcgtCTGTCAGGGAGCCTTCAAAAACTCGTTAACATGTGATACATTGTTTCTCTTCGGTTGTTTTTGTTCCGTCTGTTTGTTCCgggtgtttctgttttgttcctttCGGTCCGGAGGGGCTTTCTCAGAATCTCCTGCTGGCGGTCCGGGGCGGCGGCGCCTCGCCTCACCCTCCAGACGGAGCCCGTGCAGGTTTACAGTGGTACTTAAATATAGCGTCGCCGTCCGCGCCCGGGGGCGTGTGTCCTGCCGTGGAGGCGGTGTCCCGGGGGGAGCGGCGCGCGGGTCTAGTTTTTAAATCGTGACGCTCGCTCCGCCGCACTGCATGGCCAGTTGTAGATTTGCGATCACAGTACTTCTCTTAGAGACCTCTTTGGCGATGTTCGCTCTCGGACGGCTGTGGGAGCTCTTTGAGTCTAGAACACAACGAACAGCACTGGagttacgtgtgtgtgtgtgtatatatatatagatctgtgtatgaatgtatacatatctatatatatgtgtgtgtgtgtgtgtgtttgtgtatatatatatatttatgtatgtgtatataatatgtatgcacacatatatatgtatttttatgacaaCCATAGGAAGTAGGATTCAATTATCTAGCTGTATTATATGATCCGCCCTGTTGGGGGGGCATCTTCTTCACCACAGTTTGTAATCAGACacacttttctttcctcttGTGCTGCTTCAAGTGTGTGCCGTCTGAGCGGAATCGGACGCCGGCCTCCATCATCACAGTAGCTTCGGCGTAGAGGTTCGCCGAAACATACAATTACTAGTGAGCAAAAACTCGGGTGCGACTCGACGTGAGGCGGCCGTGCGGTCGGTCGGTCGGCACGGTCCCGGCCAGGTTTACAAGCGGGTGTGTCCGCGCCGTCTCCCCGCCCCGTGCGCAGCTCCCACCCCCGCGGTGGGAGTCCTCGTGTGGACGGCACGTGTTTGTTTAGGCGCGGCCGCAGACTAGGACGTAATCGATGTGCGCAGGAGCTATACAATCCAAATGGCAGTTGGAATTGCTGAATCTATCTTTACAGCTGGCAAGTACAGGAAGTGATACATCTTCTCTTGctaggacttttttttttcttttttttcttttatcaggTTGGCGACAAGTCGgttacattgtgtatttaaaactctACCTGGTTCGTAGCCGACTAGAACTGTGATGTACAGATGACGTATTACTGAAATCTGAAAGCAAGTAATGCAATGATAATAGGACacacactttttgtatttttattcttgtataAGGTTATTTGCTGGCTATTGTTTAGCCTCTAGTTCATTCTGTGTTATTTAAATTCTAATATATGAATCATATTTGGATTGAAGTCATGTTCAGGGGCCATGTTGTGTATGTATTGAGATGTAATGCCTTTGAATGtgaataattattgtaaactaTGATattttacaactttttttttttttttttttttttctt

Function

symbol description
pdpk1 Enables 3-phosphoinositide-dependent protein kinase activity; phospholipase activator activity; and phospholipase binding activity. Involved in several processes, including cell surface receptor signaling pathway; regulation of protein kinase activity; and regulation of signal transduction. Acts upstream of or within intracellular signal transduction. Located in cell projection; cytosol; and plasma membrane. Implicated in prostate cancer. Biomarker of lung non-small cell carcinoma.

NR:

description
PREDICTED: 3-phosphoinositide-dependent protein kinase 1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06276 PDPK1; 3-phosphoinositide dependent protein kinase-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018179 True 3612 mRNA 0.47 13 3900513 3910188

Neighbor

gene id symbol gene type direction distance location
AMCG00018175 NA coding upstream 22688 3868385 ~ 3877825 (+)
AMCG00018174 NA coding upstream 51367 3832577 ~ 3849146 (+)
AMCG00018172 LOC103021790,LOC108433116,LOC108256804,LOC107741797,LOC107574133 coding upstream 219181 3680721 ~ 3681332 (+)
AMCG00018173 NA coding upstream 237312 3639922 ~ 3663201 (+)
AMCG00018165 NA coding upstream 740484 3155022 ~ 3160029 (+)
AMCG00018178 NA coding downstream 20333 3930521 ~ 3943520 (+)
AMCG00018180 ube2i,LOC107677193 coding downstream 39553 3949741 ~ 3956739 (+)
AMCG00018184 baiap3,LOC107550313,LOC107719179,LOC107703313 coding downstream 70504 3980692 ~ 4013068 (+)
AMCG00018181 LOC106940169,LOC103155118,LOC106907654,LOC103462289 coding downstream 110528 4020716 ~ 4027794 (+)
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding downstream 150623 4060811 ~ 4063955 (+)
G114731 NA non-coding upstream 663269 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 731531 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 797343 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1017545 2882432 ~ 2882968 (+)
G114624 NA non-coding upstream 1033276 2864988 ~ 2867237 (+)
G114806 NA non-coding downstream 105890 4016078 ~ 4018982 (+)
G114867 NA non-coding downstream 283154 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 284089 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 388450 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 475992 4386180 ~ 4386889 (+)
G114551 NA other upstream 1252739 2640846 ~ 2647774 (+)
G114518 NA other upstream 1331575 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1633738 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 1917947 1979046 ~ 1982566 (+)
G114330 NA other upstream 1921786 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 276222 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 684745 4594933 ~ 4604105 (+)
G115049 NA other downstream 851330 4761518 ~ 4763905 (+)
G115299 NA other downstream 2039275 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2245300 6155488 ~ 6160616 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026713 pdpk1a coding NC_007114.7 CM002887.2 45283391 ~ 45308394 (-)