G114624


Basic Information

Item Value
gene id G114624
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2864988 ~ 2867237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143550
CTTGGACTCCCTGTAGGTCTTGGAGCCGCCGCTATAGGACACACTGTGGCTGCTGGTGTCCAGGAAGCTGTCGTCAGAGAAGTGTCCAGTGGTCAGGCGGAGGCTACGCCGGGACATCCTGGGCGAGTCGAACACGGGCTCGATCCGGTGCTTGTTCTCAAAATCCAGGGCCGCAGACGAATAGCTTGAGCTGAGAAAAacagtgttggggggggggggtgaagaaATAGTGTAACGTTGTGCCATCCATTCCAGTCCCGTGAGCTTTCATATGCGTTTTTGGCCTGGTAAATGCTGGAGTCAATGCCCGTGTTATGGTTTATGTGCACTGGGAAGCCTGGAACTGCAGGTATGAACAGGCTCACTATAGCCACAGAGACGCTCTCCACGTGCAGCGCGGTCAGGAATTAACCCACAGCACCATGGAGATTAGCAGATAAAGGCTCACAGGAGCTGTGGGGACTCCTCCTGCAGCTGTCAGCAAGACactgaatgcatttgtttaaaaccaTTTGCTTGTCCATGCAGCGTTCACCATCAGTGAGCAGACAAGACCCCTACAAACATTACACTTTTCTTATTCGTTTTTCCACAGGAGGTCATCATGGTGATGTCGATACCTAGCAGATACACATGGCCCCTCTCCCAATATTTACACCTCTTACTGCACCAGAATCCATTATACCATGTTCTTCTGCATTACTCGTTTACCAAACTCTCGGGTTACATTTGCTCAAACAATGTACAGTGTTCATTTACTCTTTCCCCCTTATCCAAGTACAGTCAAGGTGCTGATAAAACTGACCAATGGAACCGGTTTCCATTTAGTCCAATTCTCACTTTTACACTGGCATTACAACTAGCTAGAGCCTCTTACCGTTTAAAACTCAATTCATCAGAGGCTCCCATGTAAGCAATTACAATTCAGAAGTTTCTTCCTACCCTGAGATCTTACACTGAACGCATAATCAAATCACACCTTTCAGTAATTGAGAATTAAGAGGGGAAACAATCCTTCAGGTTTCAGAAGAGAAAGTGAAACACAGcgaaggagagagaaaacaggggggaaaaaaaacctcAGAAACCTTCAAGTAAACAAGATCAGAAGTGCAGAGAAAAAGGAAtaggaaaacaaagacatttggTGGAAGAAATAGAAGTAGCTCAGTTTTGTCAAAGGCTTCAAGTGAAATTATGCAACCGCAGAACTGAGTGCTGCCACAGCGAGGCTGTCAGTCCTGTCATGACTCATACTTGGCAACGCTGGCATTTTaaccatttgaaaataaacagcctGCATAACAGATAGGGAGCAGCTGCATGCAGCACCATTTCAATGTGAAGTATTAATCCACAGTGCATTTCACAAAAATCCTGGCAGAGCACAAGTgctgaacaacaacaattacacaCTATTAAACTATTTGCTCCTGTACTTTATGATTCACAACAGCGGACAGAGAGCATGATTCAGTGACACAAAGTCAGGAAAACACTCTTGCACTGTGACCCAGCTGAGCTATACGAGTAATTCAAAAATCGACAAGTATTGTTTAGTACAAGCGCTATAAAAGATCCTTTGATACTTACATCAGTACAGGCTTTCAGAAACTTGTCACTTCCTTTTCAACTATGCACTTGCAAGAAAAGACCAAACAAAACCGAGCCAAAAAGACAAATGTAAGTGGTGTTGTGCAGCACCAACTCCTCCTGTGTCTTGGCACTCATCTCGAGACAGTCCTACAGTAAGCAAGAGCGATGAAGCAACTTAAATGGACTTTACAGCAGAGCTGCTTATTGACGACTCTTCACACAGAAATGCCGACACACGGCCCACTGGTCAGAGCAGCACATGGGCAGGGGGGCTCTGAAGACTAAAGAGACAGCTGTGGCAATGCTTCCCCTGCAGATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143550 True 1916 lncRNA 0.46 2 2864988 2867237

Neighbor

gene id symbol gene type direction distance location
AMCG00018150 NA coding upstream 37218 2814447 ~ 2827770 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding upstream 71115 2788373 ~ 2793873 (+)
AMCG00018144 NA coding upstream 78466 2783062 ~ 2786522 (+)
AMCG00018145 NA coding upstream 117595 2717502 ~ 2747393 (+)
AMCG00018146 NA coding upstream 147551 2698828 ~ 2717437 (+)
AMCG00018148 NA coding downstream 12331 2879568 ~ 2881846 (+)
AMCG00018155 NA coding downstream 44384 2911621 ~ 2915341 (+)
AMCG00018156 prkar1b,LOC104941536 coding downstream 58178 2925415 ~ 2934755 (+)
AMCG00018163 NA coding downstream 80197 2947434 ~ 2948696 (+)
AMCG00018158 prkar1b,LOC107653458,LOC107661853 coding downstream 82654 2949891 ~ 2965319 (+)
G114613 NA non-coding upstream 19535 2844305 ~ 2845453 (+)
G114555 NA non-coding upstream 122302 2670907 ~ 2742686 (+)
G114553 NA non-coding upstream 196327 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 255576 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 291121 2573637 ~ 2573867 (+)
G114629 NA non-coding downstream 15195 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 234929 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 300926 3168163 ~ 3168982 (+)
G114731 NA non-coding downstream 369806 3237043 ~ 3237244 (+)
G114806 NA non-coding downstream 1148841 4016078 ~ 4018982 (+)
G114551 NA other upstream 217214 2640846 ~ 2647774 (+)
G114518 NA other upstream 296050 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 598213 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 882422 1979046 ~ 1982566 (+)
G114330 NA other upstream 886261 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1319173 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1727696 4594933 ~ 4604105 (+)
G115049 NA other downstream 1894281 4761518 ~ 4763905 (+)
G115299 NA other downstream 3082226 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3288251 6155488 ~ 6160616 (+)

Expression


Co-expression Network