AMCG00018129 (trap1)


Basic Information

Item Value
gene id AMCG00018129
gene name trap1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2385300 ~ 2391998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018129
GTCATTCGGAAGCGCCCGGCGACCGTAAACACGCTGTTTGCGCTAGCGAGGTCaagactggagagagagagagcaagatgTCTCGGTACCTGTCTCTGATGCGGTGTGTGCTGGGAGCCTCGCAGCGCAGTGACCTGCGGCTCCTGCTGCCGGCCGGGCGAGTGTGCGGACATCGGCCTCTCGCTGCGGCGCTCAGCAGTGCGAGCTATGCGGGAGGGAGGCGTGCGGTGCGGGGCAGTGTGGGCGAGGGGCGGGCCCCCGGTGGCTGTTGCTCCCGTCCTCCTCTGCCCAGCCTGGCCCTGGCACGTCGAGCACACAGCACCCAGACAGCGGAGAGCAGCGAGGAGGAGCCCCTGCACACCATCATCAGCGACACGGAGAACGTCAAAGGCTCCTTCTCCAAGCATGAGTTCCAGGCTGAAACCAAGAAGCTGCTGGACATCGTGGCCAGGTCTCTGTACTCCGAGAAGGAGGTGTTCATCCGGGAGCTGATCTCCAACGGCAGCGATGCTCTGGAGAAGCTGCGGCACAGGCTGGTGTCGGCAGGCGGGGAGACCCTGCCCATGGAGATCCACCTGCAGACCGACACTGCTAAGGGCACCTTCACCATCCAGGACACTGGCATTGGCATGGGCAGAGAGGAACTGGTCTCCAATCTGGGCACCATCGCTCGCTCAGGCTCcaagGCCTTCCTGGAGGCCCTTCAGAGCCAGGCCGACGCCAGCGGCAAGATCATCGGGCAGTTTGGTGTCGGCTTCTACTCGTCCTTCATGGTGGCAGACAAGGTGGAGGTGTTCTCTCAGTCTGCAGAGCCAGACAGCCCGGCATACAAGTGGTCCTCCGACGGCTCAGGGCTGTTCGAGGTGGCCGAGGCCAGCGGCGTCAGACAGGGAACCAAGATCGTCCTGCACCTGAAAGACGACTGCAAGGAGTTCGCCTCCGAGGACAGAGTCAAAGACGTTGTCACCAAGTACAGCAACTTCGTCAGCTTCCCCATCTTCCTGAACGGCCGGCGGCTCAACACCCTGCAGGCCCTGTGGACCATGGACCCCCGGGAGATCAGCGACTGGCAGCACGAGGAGTTCTACCGCTACGTGGCGCAGGCGCACGACAAGCCCCGCTACACCCTGCACTACCGCACCGACGCGCCGCTCAACATCCGCAGCATCTTCTACGTCCCGGAGCAGAAGCCCTCGATGTTCGACGTGAGCCGGGAGCTGGGCTCCAGCGTGGCGCTGTACAGCCGCAAGGTGCTGATCCAGACCAAGGCCGCCGATATCCTGCCCAAGTGGCTGCGCTTTCTGCGAGGCGTGGTGGACAGTGAGGACATCCCCTTGAATCTCAGCAGAGAGCTCCTGCAGGAGAGCGCCCTTAtcaggaagcTGAGTGAGGTTCTGCAGAAGCGGGTGATCAAGTTCCTGGTGGATCAGAGCAAGAAGGAACCCGAGAAATACGCCAAGTTCTTCGAGGATTACGGTCTGTTCGTGAGGGAGGGCATCGTCACCACGGCCGAGCAGGATGTCAGGGAGGACATCGGCCGGCTGCTGCGGTTCGAGTCATCGGCGCTGCCCGCAGGGCAGCAGACCAGCCTGCAGGAGTACGCCAGCCGCATGAAGGCCGGCACGCGCCACATCTACTACCTGTGCGCCCCCAGCCGGCACCTGGCCGAGCACTCACCCTACTTCGAGGCCATGCGGCAGAAGGACATGGAGGTGCTGTTCTGTTTCGAGCAGTTCGACGAGCTCACCATGCTGCACCTGCGCGAGTTCGACAAGAAGAAGCTCATCTCTCAGTCTGAGGAGCTGATGGCCTGGATGAGGAACGTCTTGGGGCAGCGAGTCACCAACATCAAGGTGACGCCCCGTCTGGACACCCACCCGGCCATGATCACGGTGCTGGAGATGGGTGCGGCTCGGCACTTCCTGCGCACGCAGCAGCTGGCCAGGAGCAGCGAGGAGCGCGCCCAGATCCTGCAGCCCACGCTGGAGATCAACGCAGGgcaCGACCTCATCAAGAAGCTCAATGAGCTGAGGGACTCCAACGCCGATCTGGCCCAGCTGCTGCTCGAGCAGATCTACGACAACGCCATGATCGCGGCCGGCCTGAACGACGACCCCCGGCCCATGATCGGCCGCCTCAACGACCTGCTGACCCGAGCCCTGGAGAAACACTGACCGCGGGACGGGCACCGCCCCCCCATGCCGACCAAGAGGACTGGCGAACACTGCGACTCAGACTTTGAACTGCTGCCACGGGGCATCTCACCACagttgacctctgacctctatGGCAGAGGTCCATGCGAGTGACGTGCTCATCTCCCCGCAGGACTGAATACCAGGAACTGACGAGATCTCTACTACGCAGACGACCTCTATTGGCATCCCCATTGCATCGCATTGTTACAGAAGtgtgtctgttattttttactttgcattGCGAGTCTGAAGGAGAGAAACAGATCCACGGCACTGCAGCATTTAACAGCGCTTCAACTCGAGCAACGCAGCTGCCCTTCTGTGTGGAGCATCTCTCGAGTTTTACTCGTCTACAACATGTATAACGTATCCGTCCTGTTAGACACATCTAGCTGTTGTGGTGAAATCAGACGCCCCCGACCTTTACACTCGGTGACGGAGAGAAGCTCATATAGACGGTTAAATGTGAATGTTAAATGTACGGGAGTTCAGATTGTGAAATTCCTGTCTTCTCACAGATTGGCTCTGACCTCGTTgtcaaacaaattacaataaattattaCAGTTGTTTTTCTGGTTCACAGTCTTGTGTCGAGGAGAAAGTGTCATTTACGTGAATAAATCCTTAAAACGATGATAAACACAAGGTGGGGAAGCGTGGAGAGCCAGCGACCTCTGAGATTGCCTGAATGAGGGATTCCCCACATCTTAGATTAGATTCTGAATTTCTGTTCCTGATTTAGGAGTTGACTTTGATTCGATTCCtcttaaaaagcacaaaatatatattttatccgAATTGTTTCAAATCCCAAATGTGCAACTGTAATAAATTCAGAAGTCCTGCCCCTCCCTCTCTATTCCTGATACATTATATATTGATGGGATCTTTTTTCAATTCTCTCCCAAACCCCGATTCTGAAGGGAAGCCAGTCGTGGAAATgtgatgctttaaaatgtttcttgtgtaaagtGGAAGTCGCGCtggagaaataataattatactactactaatgtgAATAAAATGAGTGTGGGGCTTTAGTtcctaatattattattattattattat

Function

symbol description
trap1 Enables ATP hydrolysis activity; identical protein binding activity; and metal ion binding activity. Involved in nucleic acid phosphodiester bond hydrolysis. Predicted to be active in mitochondrial inner membrane. Orthologous to human TRAP1 (TNF receptor associated protein 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: heat shock protein 75 kDa, mitochondrial

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09488 TRAP1, HSP75; TNF receptor-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018129 True 3268 mRNA 0.57 18 2385300 2391998

Neighbor

gene id symbol gene type direction distance location
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding upstream 3213 2356277 ~ 2382087 (+)
AMCG00018127 NA coding upstream 51269 2328704 ~ 2334031 (+)
AMCG00018125 NA coding upstream 79856 2302964 ~ 2305444 (+)
AMCG00018124 srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding upstream 93540 2281697 ~ 2291760 (+)
AMCG00018120 LOC106601835,LOC107695711 coding upstream 172376 2211509 ~ 2212924 (+)
AMCG00018128 NA coding downstream 1307 2393305 ~ 2401409 (+)
AMCG00018131 NA coding downstream 29267 2421265 ~ 2432982 (+)
AMCG00018133 NA coding downstream 41400 2433398 ~ 2433656 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding downstream 42458 2434456 ~ 2443528 (+)
AMCG00018132 NA coding downstream 57791 2449789 ~ 2464758 (+)
G114359 NA non-coding upstream 335123 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 363670 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 401150 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 414891 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 432036 1952874 ~ 1953264 (+)
G114484 NA non-coding downstream 18479 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 24809 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 181639 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 217145 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 276462 2668460 ~ 2668661 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 118525 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 402734 1979046 ~ 1982566 (+)
G114330 NA other upstream 406573 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 411376 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 435707 1947841 ~ 1949593 (+)
G114518 NA other downstream 99315 2491313 ~ 2568938 (+)
G114551 NA other downstream 248848 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1794412 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2202935 4594933 ~ 4604105 (+)
G115049 NA other downstream 2369520 4761518 ~ 4763905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025085 trap1 coding NC_007114.7 CM002887.2 9588705 ~ 9626674 (+)