G114484


Basic Information

Item Value
gene id G114484
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2410477 ~ 2412789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143377
TTGCAGCGCCATGTCAGTTTACCCTTCAAAGCAGCACAGTGGCTCCGATGAATGTACTtctcacactgcactgcaggaAATAAGGGATTAAACATTGACCAGTGCCTTATCACAGCGTCGGCTCACAGGGATGCCCCTCCCAGGTGGGAATTTGGTGGGAATGCCAAAGAACGGGTGCAAAGAACTGTTAATTTTGGCATGTCAGGCATCAGTATTTTCTGCATGGATTGGTTTGGTTTGGAGGAAATGTGAAACTTGGCCCTGTGTGTCAAACCCGACCCAGTGGATCAGAGCGAGACGATCGGTAAGGTACAGAAAACTCTCACACAAGACatgttgtttgaaatatttttattttaaatcgtTATAACACaccctgtttttttgtttgtttttttagtggaacacatttctcttaaaatgtaaaatgctccTGTTTGCAGCTTTTAAGACATTAAACGTTAGCTGCAGGTGTCAGTTTCCTGCCATTCGATTTCCTGAAGTGttactgggggggNNNNTTTACATTGTAGAAGGAAGAATTCTCTCCGTGTGCGATTTAAAAGGCTGCAGTTGAGATCTGACCAGATGTTCCTCTGAACACATTGTGAGAGCCCACTGTTCTTCATGAGAACATGGCAGGCAAAGTCGGAAACAAGCGCACATTGCGGTGTGTAATCAGAGAGTTTGATGTTTAATGGTCCCGTAACTGGAACTTTATTGTAGGAATTATTGTTGTGGTGTGGCGATCTGGATTGAGAGTTCACGGTTATGACGGACTGAGGAAACAAAGTCATTCCTCCACTACAGCAGCACAGATAGTACATCCTTCCAGACCAGAGATGCTGGTCGTTGACAGTATTGTAATAAACGGGATCAGTGTTAATTCGAGTAGCTCTCTCGTTCCCACAGTAGGGCGATGATGTCGGGCTACTTCTCTCGCTGAACCAGGTTTGGAGAGGGGGCTCAGCAAAGGACCCTGGCTGGGAAGTCGTTTCTGGCCTGTTCATTAAACATGGCGTTTGAATTGAACTTCTCTCCTCAACCCTGTGGAGATGCCGGAGGACAGGGCTGCATACTCCTGTCAACACAATGGGGGTCTTGCTGGGGGCCAGACAGGTCTGTGGAGTAGCTCCCCCCAACCCAACATGACAGCTGAAACTCTCTTTAAAAAGCAGTCAACATACGCAGTGCTGACCTTGATGGGTTTCGAAAACCGCTCAGGAACCGTGAGGACACTGAAGTAGACTGGCCATTGTCGAGCggtttgaaaacaaaccaaaccaaaccaaaataaacacctCGCTGTCAGCCTGAAAATGAGCATCCCGTGTCAGAGCCCTGTCCCCTCGCTGGGTCTGCCCAGCGGTGCCCAACCTGGGCAGACACacgggaaaaaaaagatttatgcCGGATCTTGAACATTTAAATCTGCTGAATTGCAGAAGAGAAGCACATCCAGCAGAGGTTATTAAATCCATCCTGCCTTTAAgataaatagaaacaaaaataagtcatTTCTGCCCCCCGGAGGCGGCGCTGTGTTGGTGTTGGATCAGCTGTggctgtgtctgtgcagtgcGGAGATCCTCTGTGGCGTTTTACAGCGGGACAGGCGCTGTGGACGCCAGTGCACGCCGCTCACAGCAGGAACGATTGGTCTCCGTGCGTTCAGGGCCAATATTTTTCTCCTGAGCATTTAAAGATGCGCATCAGACACAGCAGCCAGCCTTCACAGTTCAGTATTTTCCATGCCACCCAGAGATGAGCGAACACCCCCCGTAGTGTGGGTTCTGAGGGGGGAGGTTAATCACAGTCCACACATGTGGTAGGCACCTAAATCGAAAACAAAGTGCAGCGCTGCGCCCGAGTCGCAAAACGGTGTTGCGCTTATAGGCCTATCCCCACCCCCGGGCTCTGTAGCGGGGTGTTCTGGAATCCCTGGGTGTTCTGGAACGGTGCAGTGGAGGGGTTTCTACAGGGGCTGAGCTGCAGATGGAGAGGCTGTGCGAGTTCTGCGCTCTCTGTCTAGCAGcagggaggaaggggaggacaggagagagggacaggcTAGGGTCCGGGGCAGTGGGGGTCCGGTCTGTGTGCGGGGGGTGTGTCTCCAGTCTGCTGTGTTCCTGTGTGGGACGGCTGTGTGTTCAGTAATGGGGCTCACAGTCCTCCACCAGGCTGTCAGTGATGTAGCTGATGCCCAGCACTTCCTGGTAAAACTGCTTCTCCACAGATGTGTTGATGGTCCAGGCCACCACCTCCACGCTCCGCTCTGCCCAGTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143377 True 2293 lncRNA 0.51 2 2410477 2412789

Neighbor

gene id symbol gene type direction distance location
AMCG00018128 NA coding upstream 9068 2393305 ~ 2401409 (+)
AMCG00018129 trap1 coding upstream 18479 2385300 ~ 2391998 (+)
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding upstream 28390 2356277 ~ 2382087 (+)
AMCG00018127 NA coding upstream 76446 2328704 ~ 2334031 (+)
AMCG00018125 NA coding upstream 105033 2302964 ~ 2305444 (+)
AMCG00018131 NA coding downstream 8476 2421265 ~ 2432982 (+)
AMCG00018133 NA coding downstream 20609 2433398 ~ 2433656 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding downstream 21667 2434456 ~ 2443528 (+)
AMCG00018132 NA coding downstream 37000 2449789 ~ 2464758 (+)
AMCG00018138 NA coding downstream 161606 2574395 ~ 2579357 (+)
G114359 NA non-coding upstream 360300 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 388847 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 426327 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 440068 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 457213 1952874 ~ 1953264 (+)
G114485 NA non-coding downstream 4018 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 160848 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 196354 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 255671 2668460 ~ 2668661 (+)
G114555 NA non-coding downstream 258118 2670907 ~ 2742686 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 143702 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 427911 1979046 ~ 1982566 (+)
G114330 NA other upstream 431750 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 436553 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 460884 1947841 ~ 1949593 (+)
G114518 NA other downstream 78524 2491313 ~ 2568938 (+)
G114551 NA other downstream 228057 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1773621 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2182144 4594933 ~ 4604105 (+)
G115049 NA other downstream 2348729 4761518 ~ 4763905 (+)

Expression


Co-expression Network