AMCG00018126 (crebbpb,LOC108440697,LOC102779454)


Basic Information

Item Value
gene id AMCG00018126
gene name crebbpb,LOC108440697,LOC102779454
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2356277 ~ 2382087 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018126
ATGTCGATAGACTTGGGATCCCTGTTCGACCTGGAGAACGACCTTCCTGATGAGCTGATTCCCAACGGCGGAGACCTGAGCCTGATGGGCATGCCCTCCAACGGCAGCTCAGGGATGGGCACCATGGCGCAGGACGCCGTCGCCAAGCACAAGCAGCTGTCAGAGCTCCTGCGGCCGGGCAGCAGCTCCAGCCAGAACGCCGGGCTCAACTCTGGCAGCCCCCAGCCGGGCATGGGACCCCAGCAGGGCGGGCCTGGGGGGCTTGCGGGGCTGGGGGCCCTCACAAAAGGGATTCAGGTGTCCGGCGGCTCGGCTACCGTGCCCTCCCAGGTCCAGAAGCAGGTGGCCTCCCCCGGCAACCAGAGCAACGCGGCCATGGGCATGAACGCGGGCTTCAACCAGGCCATGATGAACAGCAACCAGGCCCACGGGCTCCTGAACCAGAACTCCCAGGCGCCGGGCCAGGTGATGAACGGCTCGCTGGGGTCTGTGGGCCGCGGGAGAGGCGTGCCCGGCTTACAGTACTCCGGCCAGGGCATGCAGGGGCCGGCGGGGGGCGGCGCGGGGCCCGGCGGAGCGGGGAGCGTGCTGGCTGAGACGCTGACGCAGGGAGCGCCGCAGCTGGGGGGTCTGCCGGCCATGAACGCACAGCAGGCCGGCGGCATGAATAAGATGGGGCTGGCCGGCAGCGGTGGCCCTTTTGGGCAGCTGTACGGGCAGAACGCAGGGCAGCAGCTGGGGGCCACAGGGGTCAACCCCCAGTTACAGAACAAAGCGGCGCTGTCCAATAGCCTGCCCCCCTTCCCCACGGACCTGAAGGGCTCTGCCGTGTCCAGTGTGCCAAACCTGACTCAGATgcagcagcagccccagcaGGTGGGCATGGTCCCCAACCAGGGGGTCTCCACGGGCCCCACGGCTGACCCCGAGAAGCGCAAGCTGATCCAGCAGCAGCTGGTCCTCCTGCTCCACGCCCACAAGTGTCAGCGGCGGGAGCAGGCCAACGGGGAGGTGCGCCAGTGCGCCCTGCCCCACTGCCGCACCATGAAGAACGTCCTCAATCACATGACGCACTGCCAGGCCGGCAAGTCCTGCCAGGTGGCTCATTGCGCATCGTCTCGACAGATCATCTCGCACTGGAAGAACTGCACTCGGCACGACTGCCCCGTCTGTCTGCCCCTGAAAAACGCCAGTGACAAGAGAAACCAGCAGCCCATATTGAACTCCCCCAGCGCCGGTTTACAGAACTCAATCGGCACGGGGGTGACGGGCCAGCAGAGCACGTCCACCATCAACAGCGCCACCACCATCGACCCCAGCTCCATGCAGAGGGCCTACGCTGCCCTGGGCCTGCCCTACGGGAACCAGCCCTCGGCGCAGACGCAGCCTCAGGTACCGGGCCAGCCCAACGCACAGAACCAGCCCCACCAGCAGCTGCGGTCCCTCAACGCTCTCGGCACTAACCAGATGAACCTGGGGGCAGGAGGAATGGGCGTCACTGACCAGGCCAACCTGCTCCAGGACTCCTCCCTGCCTTCCTCGCTCAGTTCCTCAAATCAGCTGATGCCCGATGGCACGGCCGTGGGCAGTGTGGGAAACGTGGGCAACCTGCCCACTGCGGCGCCCCTCTCCGCCAGCGGGGTGCGGAAGGCCTGGCACGAACACGTCACCCAGGACCTGCGCAACCACTTGGTGCACAAACTGGTTCAAGCCATATTCCCCACCCCGGACCCCGCCGCCCTGAAGGACCGCCGCATGGAGAACCTGGTGGCTTATGCACGCAAGGTGGAGGGAGACATGTACGAGTCTGCCAACAGCAGGGACGAGTATTACCATTTCCTGGCAGAGAAGATCTACAAGATCcagaaggagctggaggagaagaGACGGTCACGCCTGCAGAAGCACAGCATTAACCAGACCCCCATGGCTGCCCAGGGGAACCAGCAGGCTGGACTGCCGCAGCCCTCCGCCCTGGGCCCGGCTCAGGCCGTCAGACCCCCCAATGGACCTATGCCTATTTCCAATGTGCCAAATCAACATATGAATCGCATGCAAGTTTCTCAAGGAATGAATCAGTTTAACCCCATGACAATGAACAATGTATCGATGACACAGACACCTATGGGACCCCGGGCCGCCTCCCCGATGAACCATCCTGTACAGATAAACATGGGCTCAGTTTCTACGATGGCAATGTCCCCTACCAGAATGCCACAAGCACAGGGCATCATGGGACCCCACGCTAACAACATGGTCGGCCAGACTGCAAATCAAAACCAGTTCCTGACCCAGAACCAGTTTCCTCCTTCCAGCGGGGCGATGAATGTGAATGTGGGCCTGGGGCAGCAGGCGGCCCAGGCCGCCGTGTCGCAGCAGGCCCAGAACCCGAATCTCCCCATGAACCAGATGGGCCCCCTCGGCACGCCGCTGCCCTGCACCCCCGTGGCCCAGCCGTCGCACCACCAGGCCCAGCCGCCCGCCTCCTCGGCCACCGCCAGCATGCAACCGATGCAGCACCCGGCGTCCCAGGGCCTGACGCCGCCGCAGGCCCAGCCCTCCACCCCGGCCTCCTCGGGAGGGCAGGCGTCCACGCCCAGCGTCCTGCCCAGTGCGGCCCCCGCCCAGGGCACCCCTCCAGGCCCGCCCCCCGGCCAGGCGCCCGGCCAGCCCCACACGCCTCTCCAGCTGCCAGCCGAGCCCACGCCGCAGCCCCAGCAGCCCAGCTCTGTGCAGGCACAGCCGCCCACCACTCCGCTGTCTCAGGCTGCGGCCAGCATCGACAATCCCGTCCCCACCCCTGCCTCGGTGGCCAGCGCAGAGGTGCACTCCCAGCAGCCCGTGCCTGACCTCCCAGCGCCTGAACCCAAGCTGgaggtgaaggaggaggagcaggactTCGAGCCCAGCGAGCAGCAGACCGACACCAAACAGGAGGTGAAGGAGGACCCCGAAGGGGCGGAGCCAAAGCAGGAGCCGATGGAAGTGGAGGAAAAGAAACCCGACGTGAAGGTGGAGCCGAAGGAGGAAGACGAGGGCGGGGCCAATGGCACAGCTCAGTCCACGTCGCCCTCTCAGTCCCGCCGGAAAATTTTCAAGCCTGAGGAGCTCCGCCAGGCCCTGATGCCCACGCTGGAGGCCTTATATCGGCAAGACCCAGAGTCCCTGCCCTTCAGGCAACCGGTGGACCCCCAGCTCCTCGGCATCCCGGATTACTTTGACATCGTGAAGAGCCCCATCGACCTGTCCACCATCAAGAGGAAGCTGGACACTGGGCAGTACCAAGAGCCCTGGCAGTACGTGGACGACGTCTGGCTGATGTTCAACAATGCCTGGCTGTACAACCGCAAGACCTCCCGCGTCTACAAGTACTGCACCAAGCTGGCCGAGGTGTTCGAGCAGGAGATCGACCCGGTCATGCAGGGCCTGGGCTACTGCTGTGGCCGCAAGTACGAATTCTCACCCCAGACGCTGTGCTGCTACGGGAAGCAGCTGTGCACCATACCCCGCGACGCCACCTACTACAGCTACCAGAACAGGTATCACTTCTGCGAGAAGTGTTTCAACGAAATCCAGGGCGAGAGTGTCACCCTGGGAGACGACCCCGCCCAGCCGCAGACcatGATATCGAAAGACCAGTTCGAGAAGAAGAAGAACGACACGTTGGATCCCGAGCCttttgttgaatgTAAAGACTGTGGACGCAAAATGCACCAGATCTGTGTACTACATTATGATGTCATCTGGCCCTCTGGCTTCGTCTGTGACAACTGTCTGAAGAAGACGGGTAAATCGCGAAAGGAGAACAAGTTCGCTGCTAAAAGGCTGCAGACCACCAGGCTGGGCATGTACATCGAGGACCGCGTGAACAAGTACTTGAAGAGACAGAACCACCCCGAGGCCGGCGAGGTGTTCGTGCGGGTGGTGGCCAGCTCGGACAAGACTGTGGAAGTCAAGCCCGGAATGAAATCCCGGTTTGTGGACATGGGGGAGATGGCCGAGAGCTTCCCCTACAGAACCAAAGCACTTTTTGCCTTCGAGGAGATCGACGGGGTGGACGTGTGTTTCTTCGGCATGCACGTGCAGGAGTACGGGTCCGAGTGCACCTTCCCCAACACCAGGCGCGTGTACATATCTTACCTCGACAGTATTCATTTCTTCAAACCGCGGAGTCTGCGGACGGCCGTCTATCATGAGATCTTGATCGGGTATCTGGAGTATGTCAAGAAACTCGGGTACGTGACTGGTCATATCTGGGCCTGCCCCCCCAGCGAAGGGGACGACTATATCTTCCACTGTCACCCTCCCGATCAGAAGATCCCCAAACCCAAGAGACTGCAGGAATGGTACCGGAAGATGCTGGACAAGGCCTTTGCCGAGAGGATCATTCATGACTACAAAGACATCTTCAAACAAGCCACGGAGGACCGGCTGACCAGCGCCAACGAGCTGCCCTACTTCGAGGGCGACTTCTGGCCTAACGTGCTGGAGGAGAGCAtcaaggagctggagcaggaggaggaggagcgcaAGAAAGAGGAGAACACGGCCTCTTGCGAGACCCCTGAGGGGAACCAGAGCGACAGCAAAAACGccaagaagaagaacaacaagaagACCAACAAGAATAAGAGCAGCGTGAGTCGGGCCAACAAGAAGAAGCCCGGGATGCCCAACGTGTCCAATGACCTGTCCCAGAAGCTGTACGCCACCATGGAGAAGCACAAAGAGGACTACGACCTATGTGTCAACTGCTACAACACTAAGGGCCACGAGCACACCATGGTCAAGTGGGGCCTGGGGCTGGATGACGAGAGCAATGGCCAGGGTGGTGAGGCGTCCAAGAGCCCGCAGGAGAGCCGGCGCCTGAGCATCCAGCGTTGCATCCAGTCCCTGGTGCACGCCTGCCAGTGCCGCAACGCCAACTGCTCGCTGCCGTCCTGCCAGAAGATGAAGCGCGTGGTGCAGCACACCAAGGGCTGCAAGCGCAAGACCAACGGCGGCTGCCCGGTGTGCAAGCAGCTGATTGCGCTGTGCTGTTACCACGCCAAGCACTGCCAGGAGAACAAGTGCCCCGTGCCCTTCTGCCTCAACATCAAGCACAAGCTCcggcagcagcagctgcagcaccgGCTCCAGCAGGCCCAGATGATGCGCCGCCGCATGGCCACCATGCAGGGCCGGGCGATGCCCCCCAGCCTGCCGTCCCCGCCTACCTCAGCCACACCGGGCACCCCCACGGGCCACCAGCAGCCCGGCACCCCCCAGACGCCCCAGCCCGCCTCCGCACCCCCCCAGCCGCAGACGCCCAGCGCCGGCGTCATGACCCCCGCCTTCCCCACCCCTCCCCGGGGCGGCCAGCCCCCCGCCGCCGCCTCCCAGGGAAAGCCAGGCACCCAGGCCTCGCccctgcagcagcagccgcctccccagcagcagcaaccccctccacagcaacaacagcccCTACCCCcgccccagcagcagcagcccccgGCGGCCGCGGTGGAGATAGCGCGGCAGATTGAGCGTGTGGCGCAGCAGCAGGTGTTCCGGAGCAACATGAATGGCATTCCGGGGGCCCAGGCGCGCATGGTGGGGCCCCTGCAGAGCCCCATCCAGATGGGGACGTCCCGAGTGGCCCCGGTCATGCCCCCCATGCAGCCAGGACAGTGGGCCCCCCAGGCACACCCGCACTCAGCACAGCAGGTGCCCCCCCAGACGGCCATCCCTCCCCAGCAACAGCAGGTGCCCCAGCCACCCCAGCAGGCCCCTCCCATGCAGCGGCCCATGATGCCCCAGCAGCCGGGCCCCAGGATGCCCGGGGTGATGCCCCCTCAGGGCCCCTCGCAGCCCCCCCAGCAGCAGGCCCCGCCCCGAGGGCCCGGCAACGTCCACTCCACCGCGCTGCAGGACCTGCTGCGCACGCTCAAGTCCCCCAGctcgcagcagcagcagcagcaggtgctCAACATCCTCAAGTCCAACCCGCAGCTCATGGCCGCCTTCATCAAGCAACGCACGGCCCGGTACCAGGCCAGCcagccgcagcagcagcagcagcccccgcCCGTCATGCACGGGGGGCAGCCCGGCATGCAGAACCTGGCCCCCATGCAGGCGGGCGCCGTGCAGAGACCGGGCATGGCCCCCCAGCAGCCCCCGCAGGCAGCACCGCAGAGCATGAGCGCCATGGCGGGGCAGCAGCTGATGAACCCAGGGCACAACCCCAGCCTGCAGATCCGGGAGATGTACCGCAGGCAGCTGCTCgcccagcagcaccagcagcagcagcagcagcagcagcagcagcagcagcagcagggcgcGATGCCCGCGGCGCATGGCCAGTTCCCGCAGGCGCAGCCCTCGCCTGCCTCCTACTCGCAGCGCATGCAGCAGCACATGGCCATGCAGGGGGGCGGGGGCTCCATGGGGCAGCTGCCCTCCATGGCGCAGATGGGGCAGCCGGGGATGGGCCTGGATGGGGCGCAGAGCCTCCTGCACCAGCGCAtgctccagcagcagcaacagcagcaggcCGTGCTGAAGCAGCAGATGGGCTCCCCGGCCCAGCCGGGCCCCATGAGCCCCCAGCCGCACATGCTCCCCGGCCAGCCCCAGGGGCCGCACCTCCCCGGCCAGCAGATGGCCACGTCCCTCAGCAACCAGGTGCGCTCTCCGGCCCCCGTGCAGTCGCCCTGCCCCCCGTCGCAGCCGCCACATTCCAGCCCCTCGCCGCGGATACAGCCCCAGCCCTCGCCCCACCACGCCTCCCCGCAGACCGGCTCCCCCCACCCCGGCCTGGCCGCGCCCATGCCGGGCTCCATGGAGCAGGGACACCTGGGCGCGGCGGAGCAGAGCGCCATGCTGCCGCAGCTCAACACGCCGGGCCGCGGCGGCCTGCCCAGTGACTTGAGTCTGGTGGGGGACACGACGGGAGACACGCTAGAGAAGTTTGTGGAGGGATTGTAG

Function

symbol description
crebbpb Predicted to enable chromatin DNA binding activity; histone acetyltransferase activity; and transcription coactivator activity. Predicted to be involved in histone acetylation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and rhythmic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone acetyltransferase complex and transcription regulator complex. Is expressed in somite. Human ortholog(s) of this gene implicated in Rubinstein-Taybi syndrome; acute lymphoblastic leukemia; and acute myeloid leukemia. Orthologous to human CREBBP (CREB binding protein).

NR:

description
PREDICTED: CREB-binding protein-like isoform X2

GO: NA

KEGG:

id description
K04498 EP300, CREBBP, KAT3; E1A/CREB-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018126 True 6975 mRNA 0.65 30 2356277 2382087

Neighbor

gene id symbol gene type direction distance location
AMCG00018127 NA coding upstream 22246 2328704 ~ 2334031 (+)
AMCG00018125 NA coding upstream 50833 2302964 ~ 2305444 (+)
AMCG00018124 srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding upstream 64517 2281697 ~ 2291760 (+)
AMCG00018120 LOC106601835,LOC107695711 coding upstream 143353 2211509 ~ 2212924 (+)
AMCG00018121 NA coding upstream 152947 2200435 ~ 2203330 (+)
AMCG00018129 trap1 coding downstream 3213 2385300 ~ 2391998 (+)
AMCG00018128 NA coding downstream 11218 2393305 ~ 2401409 (+)
AMCG00018131 NA coding downstream 39178 2421265 ~ 2432982 (+)
AMCG00018133 NA coding downstream 51311 2433398 ~ 2433656 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding downstream 52369 2434456 ~ 2443528 (+)
G114359 NA non-coding upstream 306100 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 334647 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 372127 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 385868 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 403013 1952874 ~ 1953264 (+)
G114484 NA non-coding downstream 28390 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 34720 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 191550 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 227056 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 286373 2668460 ~ 2668661 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 89502 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 373711 1979046 ~ 1982566 (+)
G114330 NA other upstream 377550 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 382353 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 406684 1947841 ~ 1949593 (+)
G114518 NA other downstream 109226 2491313 ~ 2568938 (+)
G114551 NA other downstream 258759 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1804323 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2212846 4594933 ~ 4604105 (+)
G115049 NA other downstream 2379431 4761518 ~ 4763905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026122 crebbpb coding NC_007114.7 CM002887.2 9634777 ~ 9722603 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_06658256_06687802 CREBBPA, CREBBP coding CI01000030 null 6658256 ~ 6687932 (+)