XLOC_012162 (htr1d)


Basic Information

Item Value
gene id XLOC_012162
gene name htr1d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28166859 ~ 28198099 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023976
GAAGACCGCCGGACGAAACGGGACAGTGTACTATTGCGTAGGCTACTCGTCGCTTTGCActaaaagagaaatatttattttcttctcaGGTGTTGAGCACATTCTTTCTCCGCTTTTTATAACGATATACGCTGTAAAGTGTCTTTCCACATGGCTTAGGAGTCTCCTGTAACTATGCGCGATTTTTAACCACACACATCGTGCTGGATAAGGCGCATCGCAGTTTGTCTGACCTTTACCATTTAAAGGTAACACTTATTTTGGATACTCGACTTGATGACTTCGATTTGAAGACTCGCTCGTGATGAAATGATGGAATTCTGCAACTTAAGTTTGATCTTCACTTGGATTGATTTCTTTCATCTGGACTAACACCTACACAGGGCCAAAACGAGAACTTTCAACAGCTTTTGGTGTTCAGGGAAACTGCAAAACCAGCCATCCGTGGATGTACAGGGAATGAAGGAATATTCTGTGCCATTAGTCTGAAACAACAGAGCTTCTGCTGACCAACTGGAGAATAAATTAAAAAGTCTTCCACCAGTTCATATTACCCAAAATTGAGGGATCTCCCATTAAAGAAGAATAGCAGAATAAGGaacaataaagaaaataatgaGCAGTGATTTAAGGGCTAAAGGAATATTTTTATAACTTAAGTCAAGTACAAAGAATAACGCCGGACCCTTGTTTGTTCTGTGGCATTTAACTTGCTGGGtttcaaaaacaaagcaaaaagagCACAAAAAGAGTAACAGCACCTTCAACCATGAATTACCACTCACATTTATCAGCCATGACCTTCACAAATGTAAAGCATTACCAATATCTCCAACAGCCGAACTAGAATTACTCTTTCACCTCGAGATGTTTTCATGGGATAATTAATCCTTAACACCAAAAAAATCATGCATAGATGATGTGAAGCGCTGCTGAACCATGCAACATGGATCTGTTCAACAGCTCCGATGAGTTTTTCCTCATCAATGCCACAGTCAGTCCCACAACCCTGGAGTCCTGGGACGACGCCACGCTCCTCAGTCTGCAGATCTCCATCTCTGCCATGCTAGCAATCGTCACTTTGGCCACAGCTCTGTCCAACGCTTTTGTAATCGCCACGATTTTCCTCACACGCAAGCTTCACACCCCTGCCAACTTCCTGATTGGCTCTCTCGCAGCGACAGACCTCCTGGTGTCCATTTTAGTCATGCCGATCAGCATCGTCTACACGGTCAGTAAGACTTGGACTCTGGGTCAGATTGTGTGTGATATCTGGCTATCATCTGATATAACGTTCTGCACGGCCTCCATCCTGCATCTATGCGTGATCGCGCTGGACAGATACTGGGCCATCACGGACGCCTTGGAGTACTCGAAACGGAGAACCATGCGGCGAGCAGCGTTGATGATTGTCATAGTATGGGTGATCTCCGTCTCTATCTCTTTACCTCCTCTATTCTGGCGGCAGGCGAAGGCTCATGAGGAGCTCACGGAGTGCATGGTCAACACCGACCAGATCTCCTACACGCTCTATTCCACATTTGGCGCCTTTTATGTTCCCACGGTGCTCCTAATGATCCTCTACGGGCGTATCTATGTGGCAGCTCGCTCCAGGATCTTCAAAACACCGGCGACCAGCGGAAAGCGCTTCACTGCTGCTCAGCTCATCCAGAACTCGGCAGGCTCTTCGCTTTGCTCGCTGAACTCCACTTCTAATCAGGAGGGACATCTTCatgctggaggaggaggaggtagtggtggtggtggaggaggaggaggagggtctCCTCTTTTCACGAACAGTGTGAAAGTGAAGCTGGCTGACAGTGTGCTAGAAAGAAAGCGTCTTTGTGCTGCTCGGGAGAAGAAGGCCACCAAGACTCTTGGGATTATCCTGGGTGCGTTTATAGTGTGCTGGCTCCCATTCTTCGTGTTTACGCTGGTGATGGGTGTCTGTAAAGACTGCTGGTATCATCCTGTGCTCTTTGATGTGTTCACCTGGCTGGGATACCTCAACTCGCTCATCAATCCAGTCATCTACACTGCCTTCAACGACGACTTCAAACAAGCCTTCCACAAACTCatcaagtttaaaagatgctACTGATGTTACGCATCCCTGCCCTGTGTTGACACCTTCACTACTTAATTAgcggatttctgcagaaaacACCTGAATCCTGTGAACATTTGTCTGTCATATGATGTGGAGGAGCCAATGTATCCCAATGTTAGTTTTTCAGTGAGCTCCTAAACACGCACATAGTGTCCGGTCGATGTAGATTACTGTTCTCATGAGACAGCTTGTAAAATATTGTGCCATATTGTTGATGCTTCCTTGTAGTTTAAGAATGCATGCTAAGATTACCAATCCTTCGCTTGAGAGCAATGTTCTCTTGTCTCTGTAAACAATAGCtgtctataaactgctttaatgaCCAGGAACAGACTGAAATCAAATTGagactttatttaaaacagatataaataaatgaagattggTGCTCCCATGGGAACACATACAGTACCATATATATGGGCCATGGAGGACCATGCTGAAGATCACGGACATTAGCCTAGCCTccctaaataaaaatgttcattacataatattaaaaaaaagaagctttaca

Function

symbol description
htr1d Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; smooth muscle contraction; and vasoconstriction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human HTR1D (5-hydroxytryptamine receptor 1D).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0040012 regulation of locomotion biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090409-3 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; smooth muscle contraction; and vasoconstriction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human HTR1D (5-hydroxytryptamine receptor 1D).

Ensembl:

ensembl_id ENSDARG00000054124

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023976 True 2633 mRNA 0.45 2 28166859 28198099

Neighbor

gene id symbol gene type direction distance location
XLOC_012161 kdm1a coding downstream 64870 28082441 ~ 28101989 (-)
XLOC_012160 ptafr coding downstream 190828 27971144 ~ 27976031 (-)
XLOC_012159 ythdf2 coding downstream 747360 27407918 ~ 27419499 (-)
XLOC_012158 NA coding downstream 763108 27402643 ~ 27403751 (-)
XLOC_012157 si:ch1073-358c10.1 coding downstream 783991 27314088 ~ 27382868 (-)
XLOC_012163 BX465838.4 coding upstream 332368 28530467 ~ 28530582 (-)
XLOC_012164 im:7136021 coding upstream 409318 28607417 ~ 28612851 (-)
XLOC_012165 BX465838.1 coding upstream 425949 28624048 ~ 28624176 (-)
XLOC_012166 BX465838.2 coding upstream 445359 28643458 ~ 28652512 (-)
XLOC_012167 ap4s1 coding upstream 505872 28703971 ~ 28707970 (-)
XLOC_012152 AL928908.3 non-coding downstream 1181100 26982035 ~ 26985759 (-)
XLOC_012151 NA non-coding downstream 1198518 26950412 ~ 26968341 (-)
XLOC_012147 AL928908.2 non-coding downstream 1364123 26783926 ~ 26802736 (-)
XLOC_012142 NA non-coding downstream 2211669 25953510 ~ 25955190 (-)
XLOC_012172 NA non-coding upstream 723473 28921572 ~ 29022679 (-)
XLOC_012176 NA non-coding upstream 1017967 29216066 ~ 29224911 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_01391124_01392266 HTR1D coding CI01000189 null 1390642 ~ 1393944 (-)