XLOC_012187 (si:dkey-27l15.1)


Basic Information

Item Value
gene id XLOC_012187
gene name si:dkey-27l15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30140099 ~ 30225524 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024010
GTTGAGGAAGTGTAGTGCACGCGTCTGTTCAAATCAGCGATCACATGCGAAACTCAGCTCTGTTCGATGTTTGATATTCTGTCTGGATGTGATACAGGCAAGATACAAGACGTCCTGCGAGTTCCCGGCAATACAGATAACCGCTGACAGACGCCAGCCAATTTGCTGTCCCGCCGCACCAGAGCAAGGCACTAGAAATATGGGCTGAGGAGTGACCCTTTGGCTGTGTCGCCCATCCATCCGAACCTGGTGGTGGGCTGGCCACCGTGGTAATTGCCTGCGAAACAGTGTTTTGACAAGCCAGACGGGTGTAAGCCATCATTCTAGCAGCACGGTGATGAGGTGTCACCTGGAGAGAGCTGTTGAGAGCCCACATGTTTACATGCAGCCAGGAACTCCGCTGTGACCAGTGTGCTTGCTTTGGAGAACAAAACTACACTGATCCTAAATTGGTCTATAGTGTTGACTTCCTTGGACTCCATGACTTATGCTCATATAAAGAACTGGAGAAAGTCCTTATGGTGATTAACCCATCAGTCTTTTGGCAAACCTCCTCTATGTCAGGGCAGTGTTGGATGGCACCAGTCAAAATCCTCTGGTAGGCTCAAAGCACTGAataacttaaagggacagtacacacTGACTGTTAAATTACTCAAGACGAACagtaggtgactttttttcttcagcagAAGTTTAAAGCAGattcttttaaattcatgttttttgGTTATTTACTAAATTAATGTTAAAAGTTACTGGCATTTTGAGTTAAAATAATATCTACCAGCTAAATAAATTCAATACCTGTGGGCCTTca
>TCONS_00024920
TCTTAACCGCGGACTTGAACCTCATCGTCACTGTCAACtatgctctgcatctcaagtatGCAGACAGCGTGTCAAGCTACCAGAttaactggtaacagcggaaaagccgaccacatgcagATATTCTGTCTGGATGTGATACAGGCAAGATACAAGACGTCCTGCGAGTTCCCGGCAATACAGATAACCGCTGACAGACGCCAGCCAATTTGCTGTCCCGCCGCACCAGAGCAAGGCACTAGAAATATGGGCTGAGGAGTGACCCTTTGGCTGTGTCGCCCATCCATCCGAACCTGGTGGTGGGCTGGCCACCGTGGTAATTGCCTGCGAAACAGTGTTTTGACAAGCCAGACGGGTGTAAGCCATCATTCTAGCAGCACGGTGATGAGGTGTCACCTGGAGAGAGCTGTTGAGAGCCCACATGTTTACATGCAGCCAGGAACTCCGCTGTGACCAGTGTGCTTGCTTTGGAGAACAAAACTACACTGATCCTAAATTGGTCTATAGTGTTGACTTCCTTGGACTCCATGACTTATGCTCATATAAAGG
>TCONS_00024011
AGCCAGACGGGTGTAAGCCATCATTCTAGCAGCACGGTGATGAGGTGTCACCTGGAGAGAGCTGTTGAGAGCCCACATGTTTACATGCAGCCAGTGTGGTTCCACTGAGACAGCGGTAATCCATTAAGAAGGGGGCTGATCCTGCGAGGGGTTTGATGAAGTTGAGGCTCCTCTGCCCCATGCAGAAGGGCGTTTAGTGCTGCCGGCCCCACAGCTAGTGTGCAGGGATATATCACCTGCGTACTCACTGTTTCATcatcgctctctctttctctgctcaCCAAACAATCCTTAGCGTATCCGACTGACAACTCAGCGCTTCATGTCCAACTGCCTTCATCTCATATTATGATACATCTACTCCCCACTCGGGCCCACCACCTCAACACAAGGCCACATCTAACCATGTACGGTAACAAGaAGTGCGTGGATGCATGAGGCGAGAGCCGTTTCCCCCCGGTGAGCAGGGCCGGTCGGGACAGGGGCTTGACCCTTCCTCCGACCCCTCATCATTTCCGCCGGCAGGTGACGCTGGCAATTACAGCCTCGACTACTGGCCGCGTCCGGCTGCTTCTGCAGGGCCCGTGATGAATTGCAAATGGCTGGCACCCAGCGCACAACTCCAAACTCAAATAAATCTTCAGCGTGTAATAATGACAGGAGCAGGGAGAAGACTGGCAGCTATAACAAGGCAGCCAGTGTCACCCACTTACGCCAGGCTTTCAAGATCCATCATTACCTGCCAGGCCCCACGCTAAGG
>TCONS_00024921
TCTTAACCGCGGACTTGAACCTCATCGTCACTGTCAACtatgctctgcatctcaagtatGCAGACAGCGTGTCAAGCTACCAGAttaactggtaacagcggaaaagccgaccacatgcagATATTCTGTCTGGATGTGATACAGGCAAGATACAAGACGTCCTGCGAGTTCCCGGCAATACAGATAACCGCTGACAGACGCCAGCCAATTTGCTGTCCCGCCGCACCAGAGCAAGGCACTAGAAATATGGGCTGAGGAGTGACCCTTTGGCTGTGTCGCCCATCCATCCGAACCTGGTGGTGGGCTGGCCACCGTGGTAATTGCCTGCGAAACAGTGTTTTGACAAGCCAGACGGGTGTAAGCCATCATTCTAGCAGCACGGTGATGAGGTGTCACCTGGAGAGAGCTGTTGAGAGCCCACATGTTTACATGCAGCCAGGTGACCCAGTTTTGCCCTGCATCAGACCACCACTGCATTCTTCACTTTGGTTTCATTTCTCTGAATCACACTTTACTAATTTTGTTTGTCAGTGCTGAAGGCGGGTTCTAGGGGAGATTCATAGTCTATACTATAAAGCTCTTTATAATTTGATTTGCTTTAATACCTAATCTTGAGACTCATGAAAGATTACCCaaagataaaaaacaaacaaacaaactattcaGAGTGCTAATAGGGATTTTACGCCACAGACTTGTGTATTGTGTTAAACAGGTGATTTCAGGTAAGGTTTTTGTATGTGCTTTGATTCggttaaaagtcactttttatgTTGGATAAAAGTGATAGCACTCTTGAAGTTCAGTGgtttaaagttatttatatatattgtatttatatcatcTGTCGCATGCCTAAAAAAATCTTCATCAATTAAATAGTTCAGTCCATTCATTGTGACCGAAAGCCTTGCCTGGCTATAAACATTTGTACTTGCATACCTCTGCGCACCCTGTTTAGGGGTTATCCCCTTGCATCGTAACGTTTTCTGAATGGTGAATGAGACGTGAGGAAATCCCACTCTTCTCATCCTGTTGTTTGAGTATTTGGTCTACTTGTGCCCAATTGTATCTTTTAGAGGAGTTGTGGACAGTCATTGTCCAGGGAGGGCAGGGTGTTTGGCTTTTTAAAGCTAGCTTGCTATTACTAGCCTCTCCCAAATCACCTACCTTAACTTTAAATGTAGAATATGTATAATtcagaaacactttttttaatcGATAAATAAGACAAAGAAGTGCACTGCAGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024010 False 820 mRNA 0.45 4 30140099 30205302
TCONS_00024920 False 549 lncRNA 0.51 3 30151767 30225524
TCONS_00024011 False 760 nonsense_mediated_decay 0.55 4 30176436 30204529
TCONS_00024921 True 1251 lncRNA 0.43 2 30203624 30225524

Neighbor

gene id symbol gene type direction distance location
XLOC_012186 NA coding downstream 57386 30077331 ~ 30082713 (-)
XLOC_012185 CR377229.1 coding downstream 85942 29976009 ~ 30054157 (-)
XLOC_012184 esrrga coding downstream 237912 29797876 ~ 29902187 (-)
XLOC_012181 ush2a coding downstream 368460 29376854 ~ 29771639 (-)
XLOC_012188 NA coding upstream 52607 30278131 ~ 30280713 (-)
XLOC_012189 NA coding upstream 80691 30306215 ~ 30369525 (-)
XLOC_012190 NA coding upstream 173425 30398949 ~ 30409759 (-)
XLOC_012191 si:ch211-175f11.5 coding upstream 244220 30469744 ~ 30473374 (-)
XLOC_012192 itsn2b coding upstream 247983 30473507 ~ 30521043 (-)
XLOC_012183 CT027582.2 non-coding downstream 416886 29722085 ~ 29723213 (-)
XLOC_012182 AL928842.1 non-coding downstream 502778 29637205 ~ 29637321 (-)
XLOC_012179 AL845481.1 non-coding downstream 867018 29272963 ~ 29273081 (-)
XLOC_012193 NA non-coding upstream 348048 30573572 ~ 30593058 (-)
XLOC_012201 BX571712.1 non-coding upstream 870802 31096326 ~ 31097541 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02663877_02665709 NA coding CI01000189 null 2663089 ~ 2665790 (-)