XLOC_012188



Basic Information


Item Value
gene id XLOC_012188
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30278131 ~ 30280713 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00024922
aggaaacccactcgaacccggggagaacatgcaaacagaaatgccaactgaccccgaggccttcttgctgtgaggcgacagaactacctactctGTCACCCTGTCGCCCAACATCATACAGTAGATGAGGACGTCCCGCCGTCAGCGTGCCTCATTCTCTTCTCTTCGTGTTGGCTGAGATCCACGGCAGAGCTGAAGCCAAGACCTGTCTAGAGAGCCCATCAAAAAGCACTCTCTGAGAGGCCACACTCGGAGATCTGCTGCTTCTCTTCTTCATTACTGTAAGTCTCATTATTGCATTGTCTGATAAAAGAACAACAGATTAGAGGAATAGCTCATATAACCACAATTCTGAAAGTATGGGATGTTTTACTCAAATTGATTGAAATCAAgaatctttttttgttattttcttccacttttatttcattgacaaaagtACAAAGATCTGCAGTGTTTTCACTCAGCCACTTCAATGTATTCtgtaaaaatgaatacatttagaaTTGTATTGATTTCACACAATCAAAAGTTGAAACaggcaaaataaaaatgaacagttTATAGAACATCTATATTCAACGTTAGGTTACGTTAAATGTCAGATGGACTTAGATTTTCCTCAGAAACTCGCTGTCACTGCACACAATCTGCCGCAGCATCAAGAAATGCGACTTGAATGTTtgtaacacaaa

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00024922 True 695 lncRNA 0.41 2 30278131 30280713

Neighbor


gene id symbol gene type direction distance location
XLOC_012187 si:dkey-27l15.1 coding downstream 52607 30140099 ~ 30225524 (-)
XLOC_012186 NA coding downstream 195418 30077331 ~ 30082713 (-)
XLOC_012185 CR377229.1 coding downstream 223974 29976009 ~ 30054157 (-)
XLOC_012184 esrrga coding downstream 375944 29797876 ~ 29902187 (-)
XLOC_012183 CT027582.2 coding downstream 554918 29722085 ~ 29723213 (-)
XLOC_012189 NA coding upstream 25502 30306215 ~ 30369525 (-)
XLOC_012190 NA coding upstream 118236 30398949 ~ 30409759 (-)
XLOC_012191 si:ch211-175f11.5 coding upstream 189031 30469744 ~ 30473374 (-)
XLOC_012192 itsn2b coding upstream 192794 30473507 ~ 30521043 (-)
XLOC_012193 NA coding upstream 292859 30573572 ~ 30593058 (-)
XLOC_012182 AL928842.1 non-coding downstream 640810 29637205 ~ 29637321 (-)
XLOC_012179 AL845481.1 non-coding downstream 1005050 29272963 ~ 29273081 (-)
XLOC_012201 BX571712.1 non-coding upstream 815613 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 901237 31181950 ~ 31185243 (-)
XLOC_012181 ush2a coding downstream 506492 29376854 ~ 29771639 (-)

Expression



Co-expression Network