XLOC_012194 (sh3yl1)


Basic Information

Item Value
gene id XLOC_012194
gene name sh3yl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30604819 ~ 30652738 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024016
GTCCAAGTGTTGCCTGAATCAAAAATGCTGACAAGCAGTTTAATCGCTTTATAACTTACCGTGGAAAAAGCGGTCTATAATTGTGACGAACCATTTAGTTTACGGCTTTACTTAATGATATTAAGAAACGTTACTTATCAAACGTAAAGAAAGGCTTTTAGATTTAATTTCTTTACGGGTCCTTTAAGCGCAATGTAAACAGGTTTGGCAGGTGTATCGGAAGTGATCGCAATCATTTCTACACCAGGTGAGACTACATAAAAGTCCGCTTGAAAGTTCGAGAAGTCGTCTTTCCTGAAAAATTTAGTCCGGTTTTCATAAtgaataatcCCATTCCTGCTAACCTCAAGTCTGAGGCCAAGAAGGCCGCCAAGATCCTCAGAGAGTTCACCGAAATATCCAACAGAATGGGGCCTGACAAGCTTATTCCAgCTCATGTCATTGCCAAGGCTCAGGGACTGGCAATCTTGTCAGTCTTCAAAGCAGGTTTCATGATCACTGCTAGGGGCGGCAGTGGGATAGTGATTGCAAGACTTGCTGATGGAAGTTGGTCTGCTCCTTCAGCTATTGGTATTGCTGGATTAGGTGGAGGATTTGAAATTGGGTTGGAGTCATCAGATTTTGTCATCATCTTGAATCAGAGGAGAGCTGTTGAGGCCTTTAGTAAAGGAGGAAATCTGACTCTTGGAGGAAACTTCACTGTGGCCGTTGGGCCTCTTGGCAGAAATGTGGAAGCAGATGTGGCGGTTCGCAGTACTGCGGCAGTCTACTCGTATTGCAAATCCCGCGGCCTATATGCTGGAGTGTCTCTCGTCGGATCTTACCTCATTGAGCGCAAAGACACCAATCGAAAGTTCTATGGGAAAGACATTCGTGCTTCTGCTATTCTCAATGGCGATGTAGAACCACCACCTGAAGCCTATGATTTGTACACCATTTTACAGGACTACACTGAGAAGTACACTACCGAATGGCAGAACAAACACATGCGGTCTTCAAGCAAGATGAGTTCAGCACCAGCTCGACCAAGGCCTCCCACACAGAAATCTGCCTCCTCGTACACACCCAGGACACAGGCTCCTCCAGCTGTGAAGCCTGCTCTCTATCCAAATTTAAACAGCTGGGATACTGGTTCAgATCAGGCATCAGGTGGAGCTCTGGTGGTCACGGCTGTTCATCCATTCACCGGCCAGCAGCCTGGAGATCTGAGCTTTAATGCTGGAGACCGAATCACCGTTGTCACCAAAACAGACTCTCAGTATGACTGGTGGGAAGGTGAACTAAAAGGGCAGGTTGGGATCTTCCCTGCTAATTTTGTGTCGTATAGTTAAAAGTTCTTAAAGCTAAAATGGATGACAATCTGGTATTGAAGGGTCCTTTTCTTTTGCACAGTTTGAAATGGTGTATATTTATAGTAGCACTTGTGGCAGGTGTTACCAACGGGTGTTACTTTAATGGGTTGTATTATTGGATGAAATTGGGTGCttttctatatttaatatatttcttgATTACAGTTTAATATATTCTTTTGATATTTTTATGTTGGCTGTTCACTCATTTTGGGTTGAGGATCCAGTTTTTtagatttctattttttttatgccATAAACACAATGGAATACAATCATGTTTGAACACAGTAATTGCAGTATGACTGAAACGCAATGTTTTTAAGCACCAGGTATTTAAATTATCATGCATAAACggtatgtttgctgtttgttttgccAGTTTTGTTTCTCTGATAACAAAGCAGGAGTGTTGTTACAGATGACTGTTATGATAACTACTGAAATGCCTTATTTATAGTTTTATGAACTTTTTCCACTTAACATCTGCCTTgatttaatattacttttttaatggtGTTTTTAAGGAGGCTGAATGTTTGATCTTCTAACTAATGTCTTATCTAACTAATGTACTAAAAAAACATGAAAGATTGTTTTGATTAATAAAGCTTATCAAAATTTTAGCTTGCAA
>TCONS_00024017
CCATTCCTGCTAACCTCAAGTCTGAGGCCAAGAAGGCCGCCAAGATCCTCAGAGAGTTCACCGAAATATCCAACAGAATGGGGCCTGACAAGCTTATTCCAgTCATCAGATTTTGTCATCATCTTGAATCAGAGGAGAGCTGTTGAGGCCTTTAGTAAAGGAGGAAATCTGACTCTTGGAGGAAACTTCACTGTGGCCGTTGGGCCTCTTGGCAGAAATGTGGAAGCAGATGTGGCGGTTCGCAGTACTGCGGCAGTCTACTCGTATTGCAAATCCCGCGGCCTATATGCTGGAGTGTCTCTCGTCGGATCTTACCTCATTGAGCGCAAAGACACCAATCGAAAGTTCTATGGGAAAGACATTCGTGCTTCTGCTATTCTCAATGGCGATGTAGAACCACCACCTGAAGCCTATGATTTGTACACCATTTTACAGGACTACACTGAGAAGTACACTACCGAATGGCAGAACAAACACATGCGGTCTTCAAGCAAGATGAGTTCAGCACCAGCTCGACCAAGGCCTCCCACACAGAAATCTGCCTCCTCGTACACACCCAGGACACAGGCTCCTCCAGCTGTGAAGCCTGCTCTCTATCCAAATTTAAACAGCTGGGATACTGGTTCAgATCAGGCATCAGGTGGAGCTCTGGTGGTCACGGCTGTTCATCCATTCACCGGCCAGCAGCCTGGAGATCTGAGCTTTAATGCTGGAGACCGAATCACCGTTGTCACCAAAACAGACTCTCAGTATGACTGGTGGGAAGGTGAACTAAA
>TCONS_00024018
TTCCTGCTAACCTCAAGTCTGAGGCCAAGAAGGCCGCCAAGATCCTCAGAGAGTTCACCGAAATATCCAACAGAATGGGGCCTGACAAGCTTATTCCAgAAATGTGGAAGCAGATGTGGCGGTTCGCAGTACTGCGGCAGTCTACTCGTATTGCAAATCCCGCGGCCTATATGCTGGAGTGTCTCTCGTCGGATCTTACCTCATTGAGCGCAAAGACACCAATCGAAAGTTCTATGGGAAAGACATTCGTGCTTCTGCTATTCTCAATGGCGATGTAGAACCACCACCTGAAGCCTATGATTTGTACACCATTTTACAGGACTACACTGAGAAGTACACTACCGAATGGCAGAACAAACACATGCGGTCTTCAAGCAAGATGAGTTCAGCACCAGCTCGACCAAGGCCTCCCACACAGAAATCTGCCTCCTCGTACACACCCAGGACACAGGCTCCTCCAGCTGTGAAGCCTGCTCTCTATCCAAATTTAAACAGCTGGGATACTGGTTCA

Function

symbol description
sh3yl1 Predicted to enable phosphatidylinositol binding activity. Predicted to be active in ruffle membrane. Is expressed in yolk syncytial layer. Orthologous to human SH3YL1 (SH3 and SYLF domain containing 1).

GO:

id name namespace
GO:1900027 regulation of ruffle assembly biological_process
GO:0032587 ruffle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040128-16 Predicted to enable phosphatidylinositol binding activity. Predicted to be active in ruffle membrane. Is expressed in yolk syncytial layer. Orthologous to human SH3YL1 (SH3 and SYLF domain containing 1).

Ensembl:

ensembl_id ENSDARG00000074393

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024016 False 1986 mRNA 0.41 10 30604819 30652738
TCONS_00024017 False 776 mRNA 0.50 7 30605520 30635298
TCONS_00024018 True 511 processed_transcript 0.50 5 30621420 30635295

Neighbor

gene id symbol gene type direction distance location
XLOC_012193 NA coding downstream 11761 30573572 ~ 30593058 (-)
XLOC_012192 itsn2b coding downstream 83776 30473507 ~ 30521043 (-)
XLOC_012191 si:ch211-175f11.5 coding downstream 131445 30469744 ~ 30473374 (-)
XLOC_012190 NA coding downstream 195060 30398949 ~ 30409759 (-)
XLOC_012189 NA coding downstream 235294 30306215 ~ 30369525 (-)
XLOC_012195 alkal2b coding upstream 8610 30661348 ~ 30666037 (-)
XLOC_012196 zgc:194392 coding upstream 47889 30700627 ~ 30702411 (-)
XLOC_012197 gdf7 coding upstream 182338 30835076 ~ 30839338 (-)
XLOC_012198 yy1a coding upstream 204270 30857008 ~ 30863252 (-)
XLOC_012199 evla coding upstream 244554 30897292 ~ 30975978 (-)
XLOC_012188 NA non-coding downstream 324106 30278131 ~ 30280713 (-)
XLOC_012186 NA non-coding downstream 522106 30077331 ~ 30082713 (-)
XLOC_012201 BX571712.1 non-coding upstream 443588 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 529212 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 731696 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1475159 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1593391 32246129 ~ 32246255 (-)

Expression


Co-expression Network