XLOC_012195 (alkal2b)


Basic Information

Item Value
gene id XLOC_012195
gene name alkal2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30661348 ~ 30666037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024019
AGCGCACGGCGGAATAGTGCGCAACCCTTATCGGAGCCGTTCGAGAGCCAAAGAGGAGGGGAATGAAATATGAGTGATTTTTTCTATACACAAAGGGAGTGGTATAATTTCGAGATTGAGAACGAAACCAATGCAGGGAAAAGGCCTCAGTCGTCTAATAGACGCTGCTGTGGATAGATATAGTCTCCCGGAGATTCTGCCTTCCAACTCCAGCTCTCACCATGATGGTCCCCGATGATATTTTGCGCTGAAAATTACAAAACTGCAGCATCCTCTTTGGGGAAACTTTCAACATACAGGAGCAGAGAGGCAGCGCGCGCACGCCGTGTCATTTAACAGAAAGAGGCTTTGATACAGAGAAAACACTTCTGTTAAGACTCCACTCGTGCCAAATTGGACCACCGGAAGATGCACGTTACGAGAGGGTGATCCAAcagaattaaaatgcattttttaaggaGTGCTCTTAACGCGTTCCTAATTAAAGACATGCCGGGGTAATCCACATGGGACAGCTCCTTACGTCTGCAACTGACAATTAAAAAGTGGGGAACCCATGCCGGAGGATCTGAAGCAACTTTACGCACCGGagggggaaaataaataaataaaaagctgcgGACTTTCGTCAATTTCCACCCACTTCGAGACAACACGATCAACAGATGACCAGGGCTGCCTTTAAACATATAAAAGAGAGTCGCGCTCCTAGTGTCATGGTGCGCTAGAGCCTGTGGAAGTACCTTTGGAGAGGCGACGCCAACGGAGTCTATTTGATGTGCTTTGCGTTATCGTTATCAATCTATAAACACACGGGAACGCCGCCGAACAAGTGTAGACTTAACTCTGCATTGAAGAGAAACAGGGCTACAGTAAGACTGGACATCGGGCAGAGGGGCTCTCTTTGCCCACCTTTCAGCATGAGTGCAGTGCGCCCACCTGTCTTCATAGGGCTCCTACTGCTGATCCTCACCACCGGCTACTGCAAACCGAGAGACAGAGACGAAACCAGTCTGCTGGAGCTCTTAATGGACAGAGTGAGACAGACACAGGAGCATCACAGTGAGGGAAACACACAGCATCCTCCTCAGATCATCGAGCATTCGCTGGAAACAAAAGACGTTAATAAAGTCACAAAGTCATATCAACATGAACGCATTCTCGAGGTCTTTCCGAGAGATCTTCGACAGAAGgataagtttttaaaacatttaacagGGCCGCTTTATTTCAGCCCCAAATGCAGCAAACTCTTTTATAAACTCTATAATAATACCAGGGACTGCACAATACCTGCCTATTATAAAAGATGTGCCCGCCTTCTTACAAGACTAGCAGGGAGTCAGCGGTGCACAGAGGGATAGATGACACAGATTTCAACAGACCTGAAGAAATAAAGAGAACCAAGAAAAGTGCCTTGGAGAAAAACAGGGAAATGAAATTATTTCTGAACAATCATATTTATCATgtgaaaaaaagctatttttgcaatgAAATGGAACTCGTATTTTTGACCTTTCTCTTCTCACATACTGCTTGACAGCCTTGTGGGTTGACAAAACTGATGTTAGAATCACGTTTACTGGCTATGATCATGGTGAAAATgaagaagacaaaaacaaactgaTAAAAAAGTCCTGCTGCCAAACGATCAACTCTGGGTGTCACATTCGACTGCATATTATATAGGTTGATTTTGCCTTCACAGGTTGTGTGTCCAGTAGTTTCTGGTTAGGAAATAACTTCGTTGTTTTGCAGATGTTCAAAGGTGTTTACTGGCTGAATGCAGCCTTTGGTCCAATATTCCTGACAACCTCAAAGTCACATTCCTCAAAGCCAGAGCTAAATCCTTTGATTGAATTATGAATTGCATGATATTTTCTTGCCTTTTTTGTCTTTACAAGACATGTCTTGGCAGAGATGAACGCTACTGGTTGGAGTTTATTCTGTGAAAGAAATGAATTGCATTTTGCTAATATTGAATGTcctatgttatatatttatacattcaaGCTATTAAATATTGCTATTGTCAAATGTATAAACATCTAAGTTAGAGTTcagtttgtaaatattgtaaatatatacagtatatatgaaaCATATGATCTTTAAATAAACGtttgttatataatatttaa

Function

symbol description
alkal2b Predicted to enable receptor signaling protein tyrosine kinase activator activity and receptor tyrosine kinase binding activity. Acts upstream of or within iridophore differentiation. Predicted to be located in extracellular region. Orthologous to human ALKAL2 (ALK and LTK ligand 2).

GO:

id name namespace
GO:0050935 iridophore differentiation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0070378 positive regulation of ERK5 cascade biological_process
GO:0030971 receptor tyrosine kinase binding molecular_function
GO:0030298 receptor signaling protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111115-2 Predicted to enable receptor signaling protein tyrosine kinase activator activity and receptor tyrosine kinase binding activity. Acts upstream of or within iridophore differentiation. Predicted to be located in extracellular region. Orthologous to human ALKAL2 (ALK and LTK ligand 2).

Ensembl:

ensembl_id ENSDARG00000042815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024019 True 2141 mRNA 0.42 6 30661348 30666037

Neighbor

gene id symbol gene type direction distance location
XLOC_012194 sh3yl1 coding downstream 8610 30604819 ~ 30652738 (-)
XLOC_012193 NA coding downstream 68290 30573572 ~ 30593058 (-)
XLOC_012192 itsn2b coding downstream 140305 30473507 ~ 30521043 (-)
XLOC_012191 si:ch211-175f11.5 coding downstream 187974 30469744 ~ 30473374 (-)
XLOC_012190 NA coding downstream 251589 30398949 ~ 30409759 (-)
XLOC_012196 zgc:194392 coding upstream 34590 30700627 ~ 30702411 (-)
XLOC_012197 gdf7 coding upstream 169039 30835076 ~ 30839338 (-)
XLOC_012198 yy1a coding upstream 190971 30857008 ~ 30863252 (-)
XLOC_012199 evla coding upstream 231255 30897292 ~ 30975978 (-)
XLOC_012200 eml1 coding upstream 310447 30976484 ~ 31082381 (-)
XLOC_012189 NA non-coding downstream 291823 30306215 ~ 30369525 (-)
XLOC_012188 NA non-coding downstream 380635 30278131 ~ 30280713 (-)
XLOC_012186 NA non-coding downstream 578635 30077331 ~ 30082713 (-)
XLOC_012201 BX571712.1 non-coding upstream 430289 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 515913 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 718397 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1461860 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1580092 32246129 ~ 32246255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G381299 NA unknown CI01000189 null 2959108 ~ 2961667 (-)
striped catfish (Pangasianodon hypophthalmus) G368028 NA non-coding NC_047619.1 CM018565.1 18356354 ~ 18372972 (-)