XLOC_012196 (zgc:194392)


Basic Information

Item Value
gene id XLOC_012196
gene name zgc:194392
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30700627 ~ 30702411 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024020
CAAGTGAAGTTAAATGAACTTTGGACCTGACTCATTCAGATTCCAATGGACGTTTTTAAGTTGTGAAGAAAATGCCTCGCAAACGTGTCAAATACAAGCGGAGATCAAATAACAAAAAGGGGGACAAATGTAAAATTGTAGCTACTAAGGGCGATCAGCCACCTGTGGAAGGAGTCAAGGCTCAGGATCAGTCGCATGTGCTGGATCAGTCACTGAAGTCCGTCAACAAGAAAGAAAAGTCCGCCAAACAAGTGCACATCGCTTTTCTACAAGAGAAATACGAGCCGCTGGTAGAAGAGGATATATCTGACCAACCACGAGATGACAATAGCAAGAACAAACAAGACAAATACAAAAAGTTAAGAAAAAATGTGCGAAAAGCTTTTCGTTACAGCTGGAAGTGTCTAGTGGTTGGACTGCAGAATTTGAGCACAGCCTATTCAATGCCTTTAGGTGTCTCTGTCGTGCCAGAAGTTCAAAGAGCCAGAGCTCAGGTCTAACATGTGTCTCCAGATGGCGTGTTACATCCGGAAGAGTGCAATTGCCCATCACTGGATTTTAACAGCCATGATATGCAACTCTTAATTTAAAAGTGCATTGgatgtatgtttatttatgtgtcaTTTTCTCAAATGAGAATAACAGATTAGAGACTAAAGTTGAGATACATTTTGCTTTTAACAAGTTAAAGATGCTGTGATGGAGTACTAATATGAGTGCACATATTATTctgatgtttcccagcactggattGTAGCTGGACAggcatctgtgtaaaacatatgctggataagttggtggttcattccactgtagcgacccctgataaataatggaagctgaaggaaaatgaatgaatattcttcTGATAATAAACCGAGAAATTATGGATGTTTAATAGGAAGGGTTAAAAAATTAGAATAGTTTCGTGGGTGTTTAGTGAGCTgagagtgttttttttctttcattttttttctttcaaatgtaGTACACTCGGTTAAAGGACAAACTAAGACAGGACACAGGTATAAAGAGACAGAATTAAGGTTATGTGGTATTTTATTAGAGATTATTTCATTGTTTCTCAACATTTAGATATTCATAATTATTCTGAATGTTGTAAATACATTGAATAAGCATATATGTACTTCAAAAGTGTGATATGAatctgcatgtttttattttgtaattatactTGTGaagaaattgttttatttaacatgatGTACACTTTTTACGAACACAAAATGTAGCTTTAATATGTGTATTCATACTGTTGTGCAAATGAGATGAACCATTAAATTGGACATGGGAtgcttgttaaaata

Function

symbol description
zgc:194392 Orthologous to human C1orf115 (chromosome 1 open reading frame 115).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4774 Orthologous to human C1orf115 (chromosome 1 open reading frame 115).

Ensembl:

ensembl_id ENSDARG00000074809

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024020 True 1328 mRNA 0.36 2 30700627 30702411

Neighbor

gene id symbol gene type direction distance location
XLOC_012195 alkal2b coding downstream 34590 30661348 ~ 30666037 (-)
XLOC_012194 sh3yl1 coding downstream 47889 30604819 ~ 30652738 (-)
XLOC_012193 NA coding downstream 107569 30573572 ~ 30593058 (-)
XLOC_012192 itsn2b coding downstream 179584 30473507 ~ 30521043 (-)
XLOC_012191 si:ch211-175f11.5 coding downstream 227253 30469744 ~ 30473374 (-)
XLOC_012197 gdf7 coding upstream 132665 30835076 ~ 30839338 (-)
XLOC_012198 yy1a coding upstream 154597 30857008 ~ 30863252 (-)
XLOC_012199 evla coding upstream 194881 30897292 ~ 30975978 (-)
XLOC_012200 eml1 coding upstream 274073 30976484 ~ 31082381 (-)
XLOC_012201 BX571712.1 coding upstream 393915 31096326 ~ 31097541 (-)
XLOC_012190 NA non-coding downstream 290868 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 331102 30306215 ~ 30369525 (-)
XLOC_012188 NA non-coding downstream 419914 30278131 ~ 30280713 (-)
XLOC_012186 NA non-coding downstream 617914 30077331 ~ 30082713 (-)
XLOC_012203 BX571712.2 non-coding upstream 479539 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 682023 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1425486 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1543718 32246129 ~ 32246255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02986636_02986941 NA coding CI01000189 null 2986548 ~ 2986941 (-)