XLOC_012202 (pkdccb)


Basic Information

Item Value
gene id XLOC_012202
gene name pkdccb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31151215 ~ 31164219 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024040
GAGACGCTGTCGTACTTTGACAGTACACAAAAAGGACCTACACTTAAACTTGCCATGACTTTCCAAAGAAGTCCGTTTTGCGCTTTCGTCCTCcttgctttgttgtttttgtctttaacGCTTATTGTGAAAAAGTGGCACTTTGGTCTCCAGGAGAACGAGCCTTTTGGTGATGCTGCCCGCTCAGATGGTTCTGCTCCACAGCGCGACACATTGCGCCAACAACTTCAGGAAAGACAACAAGAACTTGTGCTCCTGGACATCACTTTTGAAGACATACAACAACAAGAAGGATTTAATGGGAAAATTAGTTTGGATAATCCAACTGCAGCTGACATTGGTTGTGAAGAACTTGGTGGCGTGAAAGCTGTTGACTTTCTTGGTTCAGGTTACACCAAAACAGTGTTAAAAGCAGCACTGCCAAACGGATTATTTGTGGCACTGAAATCTGTAAACCATCAAGGCACTGACATGAGATTATGCTTGGATGTTTTCCAAGATTCCCAGGGATGCCTTGAGCTGGTGTCGTTCAAGCTGAGGAAGGAGATTGTGTTATTGCAGAAACTTCAGCACCCTAATATTGTAGAGCTGAAAGGTCAATGTCAGGACAGCGTCCTGGTTGGTGGCATCACAGCAGTTCTGGAGCAGGGGATGCCACTTCAGATGATCCAGCTCCTGCAGAGCCCCTGGGAAGAGCGCTTTCGGGTCTGTCTTGGTTTGGTGCGACTCCTTCAATACCTGTCTGTCTCACCTCTGGGATCAGTTGCCCTGCTGGATTTCCAGCCTCGACAGTTTGTAATGGTGTCTGGAGAACTCAAGTTAACAGACTTGGATGATGCAAGTATTCATGAACCGGTCTGTCAAGAGGACTCTGACTGCCTGCTGCAGTTTCCCCTCCGCAACTTCACCCTGCGATGCTCCCCGTCCCAAACTTGCAAGGGTCTGAATGAGATGAGAAACCTCTACAATGCCTACAGGTATTTTTTCACCTACCTGCTGCCTCATCAGGCTCCCCCGTTGCTGAAACCTCTTATTCACCACATAATGAATGCCACGGGAGATTTGAAGCAAAGCATTAATGAAACCCTGATTGCCTTCGAGAAGATTTTACATATATACAAGTCCGGACTGCACCTGGAGAACTTACCCACATCAATAACCAAAGATTATGCAGTCCTGAAAGGAATGAGGAGTGTTGTGAATGTTGAATACCGATGCTGGCCGTCGTACAGACAGCAGGGTTGTGTGTTGTCAGTTCACAGCGTCAGAGAAGCGGCGTTCATCTGTAACTCTCATACACACTGCACCAGCTTCTCTATCAGCAGCCAAACTACATGGACAGGTCGACTTCTTGCGTCTTTCAGAAGTGGCTTCAGCCATCTGGTTCCAGATGTGAACTCTGCGGTGTACATGAGGCGGGTTAAAGCCTCAGGAGCCGTGCTTTGAGAAGGAGGAAAACGCCAAAAAAGCTGGCGGGGTGGGAGGAGGGAATTGGAGACAAATGAATGTGTTATATTTATAGGCATCTTACTCAATGGCCGTTTGATCCTGCTGCCAATGCTACACGCTGCCAAAGAGCATTTAAAAGGATTTCCCTTCAGGTATAATTAACCtgaaggagaaagaaaaaaaaaagtggaaagaaaaaaaaaacaggcttctAACTTTTCCTCCCATCTTACGTTTGGCATGACACGGTCCACTGCGAGGACATTGAGGCTGTTTTTACACTGTCTGATGCCTGCAGGAGGAGAAAGAAAACAAGCTCTTTCACAGATTTACTTTGATGTTAATGAGCCTGGAAGTTTGTAGCGCTTTTCTGGGTGCCGGTGTGTGTCGAGAGAGCCGCGTCAATAGGTGGAAAACTGCTGAAACCACAAAAAGAGCAGAGGAATGTTTAGTAGGAGCCATTGTCCTTCATTTGTTAGTTGATTTGTGTCTAGATAtgtcaggccccgtttacactagtgcgttttagttttaaaacggcgttgtagaatgaaaacgatccgcgtccacactcgcgttttacccagcgtttctgaacagctctccgtccacaccaaaacgctgaaaacgcacatcacgtgaccacacacacactctcgggcaagcgctccagcattctacccagatgagagctctgcttgtcggactgctcatcacgcatctcccgctggatctaatctcactatatttgctaaacgtgatatttcattcatgttgttgtctttatctaacgacataggccaattccctgactttggtcattggaatctattaagttactttcacgggtaacatgttttggttaagtgcaaagataagttaatgattaatccaggtacattgactgatcgcttgcccttatttcctacaatgtataaacttattgtatgttatacttttataattgtcgattattaaaactgatattcagcaaaagagagggtgcgtttcgtattttcacttaaattaaaaggaggcagttgttatatgctccgttttgttataaatatccacgctcatatatgcagcacggcgcctcaacatttctgctgtctgttaagttgctaatattaaaaagaaataaggcagttccttaaatcatgtttacattttattgttgagaaagtgaaacaacgtagccaaggtgatgtgaatgaagttataaagtacactgttccgtttgaagattgacgcgtgtcctcggtatgttttccatatcaaactcagaagggggagactgcagccttgatcaaacttgcgaagtcttaacttacaagaagaggatgcgagactgaactgtgtgttaggctacttaatattgaggaaaagccccaatcagataggcgaacgtttgcagccccgcctccgttttcagatatctccgtctttccccatccacactgagacggagctgcagcgttttagaatgaaaacggcctctccagcgttttcaaaaagctccgttttcggcgctcgagaactccggcgtagtgtggacggatggcgtaaccgtagcaaaacttatgcgttttcaaactaaaacgcactagtgtaaacggggcctcagaaaTATGCTGTACTTCATCCTGTGGGTGTGTCTGTTTATAGTTCTTTCAGTGAAAGAGAGGTATTATTGGTGTGAACTTGTTCTGTtgtaatatgttttaatacaaaCTAAGTAATAAAGTTAGTATTTTT

Function

symbol description
pkdccb Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in chondrocranium; eye; midbrain; and pharyngeal arch 3-7.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-599 Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in chondrocranium; eye; midbrain; and pharyngeal arch 3-7.

Ensembl:

ensembl_id ENSDARG00000038235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024040 True 3207 mRNA 0.44 7 31151215 31164219

Neighbor

gene id symbol gene type direction distance location
XLOC_012201 BX571712.1 coding downstream 53674 31096326 ~ 31097541 (-)
XLOC_012200 eml1 coding downstream 68834 30976484 ~ 31082381 (-)
XLOC_012199 evla coding downstream 175237 30897292 ~ 30975978 (-)
XLOC_012198 yy1a coding downstream 287963 30857008 ~ 30863252 (-)
XLOC_012197 gdf7 coding downstream 311877 30835076 ~ 30839338 (-)
XLOC_012203 BX571712.2 coding upstream 17731 31181950 ~ 31185243 (-)
XLOC_012204 rpusd2 coding upstream 40845 31205064 ~ 31212420 (-)
XLOC_012205 pcmtl coding upstream 49948 31214167 ~ 31221774 (-)
XLOC_012206 bahd1 coding upstream 112218 31276437 ~ 31344400 (-)
XLOC_012207 ivd coding upstream 182341 31346560 ~ 31360956 (-)
XLOC_012193 NA non-coding downstream 558157 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 741456 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 781690 30306215 ~ 30369525 (-)
XLOC_012188 NA non-coding downstream 870502 30278131 ~ 30280713 (-)
XLOC_012208 BX539317.1 non-coding upstream 220215 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 963678 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1081910 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1969600 33133819 ~ 33138376 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03231665_03237461 PKDCCB coding CI01000189 null 3230790 ~ 3239196 (-)