RNA id: TCONS_00024040


Basic Information

Item Value
RNA id TCONS_00024040
length 3207
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_012202
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31151215 ~ 31164219 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGACGCTGTCGTACTTTGACAGTACACAAAAAGGACCTACACTTAAACTTGCCATGACTTTCCAAAGAAGTCCGTTTTGCGCTTTCGTCCTCcttgctttgttgtttttgtctttaacGCTTATTGTGAAAAAGTGGCACTTTGGTCTCCAGGAGAACGAGCCTTTTGGTGATGCTGCCCGCTCAGATGGTTCTGCTCCACAGCGCGACACATTGCGCCAACAACTTCAGGAAAGACAACAAGAACTTGTGCTCCTGGACATCACTTTTGAAGACATACAACAACAAGAAGGATTTAATGGGAAAATTAGTTTGGATAATCCAACTGCAGCTGACATTGGTTGTGAAGAACTTGGTGGCGTGAAAGCTGTTGACTTTCTTGGTTCAGGTTACACCAAAACAGTGTTAAAAGCAGCACTGCCAAACGGATTATTTGTGGCACTGAAATCTGTAAACCATCAAGGCACTGACATGAGATTATGCTTGGATGTTTTCCAAGATTCCCAGGGATGCCTTGAGCTGGTGTCGTTCAAGCTGAGGAAGGAGATTGTGTTATTGCAGAAACTTCAGCACCCTAATATTGTAGAGCTGAAAGGTCAATGTCAGGACAGCGTCCTGGTTGGTGGCATCACAGCAGTTCTGGAGCAGGGGATGCCACTTCAGATGATCCAGCTCCTGCAGAGCCCCTGGGAAGAGCGCTTTCGGGTCTGTCTTGGTTTGGTGCGACTCCTTCAATACCTGTCTGTCTCACCTCTGGGATCAGTTGCCCTGCTGGATTTCCAGCCTCGACAGTTTGTAATGGTGTCTGGAGAACTCAAGTTAACAGACTTGGATGATGCAAGTATTCATGAACCGGTCTGTCAAGAGGACTCTGACTGCCTGCTGCAGTTTCCCCTCCGCAACTTCACCCTGCGATGCTCCCCGTCCCAAACTTGCAAGGGTCTGAATGAGATGAGAAACCTCTACAATGCCTACAGGTATTTTTTCACCTACCTGCTGCCTCATCAGGCTCCCCCGTTGCTGAAACCTCTTATTCACCACATAATGAATGCCACGGGAGATTTGAAGCAAAGCATTAATGAAACCCTGATTGCCTTCGAGAAGATTTTACATATATACAAGTCCGGACTGCACCTGGAGAACTTACCCACATCAATAACCAAAGATTATGCAGTCCTGAAAGGAATGAGGAGTGTTGTGAATGTTGAATACCGATGCTGGCCGTCGTACAGACAGCAGGGTTGTGTGTTGTCAGTTCACAGCGTCAGAGAAGCGGCGTTCATCTGTAACTCTCATACACACTGCACCAGCTTCTCTATCAGCAGCCAAACTACATGGACAGGTCGACTTCTTGCGTCTTTCAGAAGTGGCTTCAGCCATCTGGTTCCAGATGTGAACTCTGCGGTGTACATGAGGCGGGTTAAAGCCTCAGGAGCCGTGCTTTGAGAAGGAGGAAAACGCCAAAAAAGCTGGCGGGGTGGGAGGAGGGAATTGGAGACAAATGAATGTGTTATATTTATAGGCATCTTACTCAATGGCCGTTTGATCCTGCTGCCAATGCTACACGCTGCCAAAGAGCATTTAAAAGGATTTCCCTTCAGGTATAATTAACCtgaaggagaaagaaaaaaaaaagtggaaagaaaaaaaaaacaggcttctAACTTTTCCTCCCATCTTACGTTTGGCATGACACGGTCCACTGCGAGGACATTGAGGCTGTTTTTACACTGTCTGATGCCTGCAGGAGGAGAAAGAAAACAAGCTCTTTCACAGATTTACTTTGATGTTAATGAGCCTGGAAGTTTGTAGCGCTTTTCTGGGTGCCGGTGTGTGTCGAGAGAGCCGCGTCAATAGGTGGAAAACTGCTGAAACCACAAAAAGAGCAGAGGAATGTTTAGTAGGAGCCATTGTCCTTCATTTGTTAGTTGATTTGTGTCTAGATAtgtcaggccccgtttacactagtgcgttttagttttaaaacggcgttgtagaatgaaaacgatccgcgtccacactcgcgttttacccagcgtttctgaacagctctccgtccacaccaaaacgctgaaaacgcacatcacgtgaccacacacacactctcgggcaagcgctccagcattctacccagatgagagctctgcttgtcggactgctcatcacgcatctcccgctggatctaatctcactatatttgctaaacgtgatatttcattcatgttgttgtctttatctaacgacataggccaattccctgactttggtcattggaatctattaagttactttcacgggtaacatgttttggttaagtgcaaagataagttaatgattaatccaggtacattgactgatcgcttgcccttatttcctacaatgtataaacttattgtatgttatacttttataattgtcgattattaaaactgatattcagcaaaagagagggtgcgtttcgtattttcacttaaattaaaaggaggcagttgttatatgctccgttttgttataaatatccacgctcatatatgcagcacggcgcctcaacatttctgctgtctgttaagttgctaatattaaaaagaaataaggcagttccttaaatcatgtttacattttattgttgagaaagtgaaacaacgtagccaaggtgatgtgaatgaagttataaagtacactgttccgtttgaagattgacgcgtgtcctcggtatgttttccatatcaaactcagaagggggagactgcagccttgatcaaacttgcgaagtcttaacttacaagaagaggatgcgagactgaactgtgtgttaggctacttaatattgaggaaaagccccaatcagataggcgaacgtttgcagccccgcctccgttttcagatatctccgtctttccccatccacactgagacggagctgcagcgttttagaatgaaaacggcctctccagcgttttcaaaaagctccgttttcggcgctcgagaactccggcgtagtgtggacggatggcgtaaccgtagcaaaacttatgcgttttcaaactaaaacgcactagtgtaaacggggcctcagaaaTATGCTGTACTTCATCCTGTGGGTGTGTCTGTTTATAGTTCTTTCAGTGAAAGAGAGGTATTATTGGTGTGAACTTGTTCTGTtgtaatatgttttaatacaaaCTAAGTAATAAAGTTAGTATTTTT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-599 Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in chondrocranium; eye; midbrain; and pharyngeal arch 3-7.

Ensembl:

ensembl_id ENSDART00000055754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024039 lncRNA downstream 53674 31096326 ~ 31097541 (-) True XLOC_012201
TCONS_00024035 lncRNA downstream 164105 30982841 ~ 30987110 (-) False XLOC_012200
TCONS_00024034 lncRNA downstream 170165 30979966 ~ 30981050 (-) False XLOC_012200
TCONS_00024026 lncRNA downstream 249343 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024932 lncRNA downstream 558157 30573572 ~ 30593058 (-) True XLOC_012193
TCONS_00024041 lncRNA upstream 17731 31181950 ~ 31183876 (-) False XLOC_012203
TCONS_00024044 lncRNA upstream 18425 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024043 lncRNA upstream 18425 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024042 lncRNA upstream 18425 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024050 lncRNA upstream 54663 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024032 mRNA downstream 68834 30976484 ~ 31082381 (-) False XLOC_012200
TCONS_00024031 mRNA downstream 68834 30976484 ~ 31082381 (-) False XLOC_012200
TCONS_00024030 mRNA downstream 92194 30976484 ~ 31059021 (-) False XLOC_012200
TCONS_00024036 mRNA downstream 92243 30999720 ~ 31058972 (-) False XLOC_012200
TCONS_00024038 mRNA downstream 92315 31020318 ~ 31058900 (-) True XLOC_012200
TCONS_00024045 mRNA upstream 40845 31205064 ~ 31212420 (-) True XLOC_012204
TCONS_00024046 mRNA upstream 49948 31214167 ~ 31220070 (-) False XLOC_012205
TCONS_00024047 mRNA upstream 49971 31214190 ~ 31221774 (-) False XLOC_012205
TCONS_00024048 mRNA upstream 50486 31214705 ~ 31221655 (-) False XLOC_012205
TCONS_00024049 mRNA upstream 52659 31216878 ~ 31221660 (-) False XLOC_012205
TCONS_00024027 other downstream 239593 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 249343 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 515920 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024011 other downstream 946686 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 1513894 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024055 other upstream 187976 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 220215 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024073 other upstream 1081910 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 1226837 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 1259215 32423434 ~ 32426104 (-) True XLOC_012221

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_03231665_03237461.mRNA True 4020 mRNA 0.39 7 CI01000189 3230790 ~ 3239196 (-)