RNA id: TCONS_00024932


Basic Information

Item Value
RNA id TCONS_00024932
length 3123
lncRNA type read_through
GC content 0.41
exon number 5
gene id XLOC_012193
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30573572 ~ 30593058 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttatttagtaaaaaataaaaaataaaacatttccatCAGAAGATATCCAGGGACTCATTACCGACAACAAAGTGGTATCTCTAAAACAACTCTGTTCTCTAATGTCCTAACAATATTcggaaaaaaatgaaaacaagaaaAAGATTACTTAGAAACTAAGTAGCCTACCTATATTAATCTTATAGGCTACATTAAAAAACTCTTCTCATTGAAATGTAGAGAACTCAGACTCCTTTCTTCAGCAATCGTTACTGACAATAACTGACACGCAATTCCCGCCAACTGTATTGCAAAAAGCCCGCGTGAGTTGCGCCTCTTGATCATCAGCTCACTCCAGTTGAAGGGGCGACGGAACTGCGAGCGAAATGTTTGGCTCTCCGGGTGGTCAATAGAAACGGTTGGAAGATGAGTGGCTTTCCTACCAGCCTCTGCTGTCGGTTCCCTAAATCGAAGGACTTGGTTAAATGCTGCTTTTAGTCCTGCAACAGTTTTCATaaACCCTTTGCATCTCATATGGCCTTTACCCCAGGGACTTAACCCTTTCTCTACTACCGTTCTGCTGGTGCTCGGTACTATGGGAGAAAGAAAAAGCAGGTGCACATATCAATAGTAAGTATGATAAACAGTACCCCTGTTTAGAAATAAGaaacataaaaatgtacaaattgtcAAATTCGGGCAAAAATGAGAGACAAAGGTGAGGAATTttccaacatttaaaaacaaagaggCCTAAATAGAAAGTTTCTATGAATGAAACACAATGGTTAGTTTTATAATGCCTTGATTATTTACATTGGTAAAGtatatataactattattattattgtccaaCTGTAAACAGATACAGTAAAACTCTATTTGGCTTGCATTAACTGAAAAACATTCTGTTCAGATAAACTTGCATCTCTCTCATTGCTCTAACTGTAGGTTGGACACAAAGGAAAAGAGATAAAGAATGTAAAGGTgcttaaaatatacatattttaaatcagTCTCTAAAATAACCTGTTCCAAGAGGGCCACTGTCCATTACAATTTAGCTCCTACCCCAATACACATCTTAATTGTGAATAAACTTAGTAGAAACTTCTATACTTAGTCCCTCCTCCTCTGTGTGCACACTTGCATGACGTAAAAATATGATTATGGGTATGAGACAAGTGTGTTAAAACTGATAAATGCTATGCTCTGGACACTGGgcctccaggaacaggactgGACACTCCTTCTCTAAACACTCAATCTTCATATCACCTCCACACTCATTCTACAGCATTCTCCCCATAACTATCCAGTCACATGCCCCCCCTTCAAACTCATGCACCAACTTTTCAACGAATGTGATCTGGATCTTCATTCACGATTTAAGTGCTCTCTTTTGATTGTACTTTCCATCATCATGGAGCATTCAAAACAAAATCCCTCAATAACGTTCTGCTTACGTTCATTCTTTCCTCAACTTACCAGCCAAGATAAATGTACATTTCCATGTTCTCCTAAACTGCATACAGAAAGCTAGGAACATTTGATTAAACAAAACCAGTAACCCTCTGTTAATATCACTTTCTTTAGAGAATACTAATGTCTTCTGAAAGATAAAACTCTCACTGATGGAACAGAGCAAAACTAGAGTTACAGAATTACAGAAAGTTCCCCCATTGCCTCTTCTTCTTTATTCCTTGGGGAATTTTGTCAGCCAGCACAATCATGGCCTTCCAGCTAGAGTTCAGACCTTTATATCGAATGGACAACTAGCTGTTAGAGTTGTGTCAAGAGCTCTAAGTGCTGCCTTGAGCGCAGACCATGCTGCTGGAGGATAAAGCCAAGACAAAATGATTCTCGCTACTTAAGTAGCAGTCTGTAGATTCAGCCACCTCTCCATCTCGTTCACAGATGGCAGTCATTGGCCTACTGGTAATCCGGCTGCGGCTGTTATACCGGCTGCTGGCTGCGGAAGGTGGTGTGCGCGAGCGCCCATATTTTGGGATAGTTTGTCCAGTGGTAAAGCGAGGCAAAGCTCCCTCCGTCCGTGCCCACTCTTCATGTGCTCTCCTGCTGCTTGTCGGAGAGGACAGTCCGTCAGCTAGTGCATTTTCTGAATTAGCCCTTTGGAAACGGGGGTCTGTGCATTTGAGAATCTCAGCGGCTGACATGCGAAAGCTGGACTCTGAGCGGCTGCCCTTCTTGAGTAGCAAAGCTTTAAAACTGTCATTGCTTGTGGTGGAGCGACGTAGGTTCCGCTGGATGGAGCTGGTCTGACGTGGCAAGCTGGGGCAGGAGCCAGTTGGAGTGACAGGTGGGGAAGGAAGGAGGTTACGGCAGCGTTCATCTTCAGAATCGCCACGGCCCAGGACCTTCCTTTTTGACCTGGGGATTAAAAGACAGCAGGACATTTTGTTAGATGTACACTTTCACAAAGGCTGGTTGCAGAGAATGCTGGGCTTTGGGAGTAATACTGAGAACTGCGAAAGCCATCTTTTCTGAGCTTGTCACACTCTGGAAAGAGCTCAGTGTAATCACCTAATCCTTACAGcagcagctcatgaaaagacaaGACACCTTCGCAGGTTGACTTTGGCCTGACGGTGAAGATCCTCAACACATGCTGGTCTGGACCCAGGCAGGAAGACGTTCTCTTGGTGGTGCCAGGGGGCTGTGTAGTGCACCGACCATTTGCTCTCCTCATCAAGACTGGACACCGCTATAAGGAAAATAAACCAGAACACATTAAAATTTAACATGTTTAAGAAATAAGGTTAGtggtttgtgtaaaaatgtattgcaaCTAAAAAAAAGAATGCATGAAGAGATTTATAGTGGCTTTTTCCTTAATTACTGCCAAGTAATTACTACCAGTTAATTACTACCAGTTTTGACCAGAGTGAACCTCTAAGATGGTATGATTTATTTCCAAAACAGCATCTTTAACCAACTATCAGTGCAATTTTTATCATTTTGAGCATTTCAGTTTAATGATTCAGTGTTGATGATCAATATGATCTATGAATCCTACAATTATTCGCAAACAGCATAACACATACTTTTGTGGTTGGAATATAGCTCTCAACCTGAGATTAGaaacattgttgtttttaaaaaaattttttagagTATTGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024014 lncRNA downstream 100211 30472411 ~ 30473361 (-) True XLOC_012191
TCONS_00024930 lncRNA downstream 163813 30403302 ~ 30409759 (-) True XLOC_012190
TCONS_00024928 lncRNA downstream 167629 30398949 ~ 30405943 (-) False XLOC_012190
TCONS_00024929 lncRNA downstream 167629 30403302 ~ 30405943 (-) False XLOC_012190
TCONS_00024927 lncRNA downstream 204317 30364855 ~ 30369255 (-) True XLOC_012189
TCONS_00024026 lncRNA upstream 307714 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024034 lncRNA upstream 386908 30979966 ~ 30981050 (-) False XLOC_012200
TCONS_00024035 lncRNA upstream 389783 30982841 ~ 30987110 (-) False XLOC_012200
TCONS_00024039 lncRNA upstream 503268 31096326 ~ 31097541 (-) True XLOC_012201
TCONS_00024041 lncRNA upstream 588892 31181950 ~ 31183876 (-) False XLOC_012203
TCONS_00024015 mRNA downstream 52529 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024013 mRNA downstream 100198 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024012 mRNA downstream 206867 30307454 ~ 30366705 (-) False XLOC_012189
TCONS_00024010 mRNA downstream 368270 30140099 ~ 30205302 (-) False XLOC_012187
TCONS_00024008 mRNA downstream 696236 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024016 mRNA upstream 11761 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024017 mRNA upstream 12462 30605520 ~ 30635298 (-) False XLOC_012194
TCONS_00024019 mRNA upstream 68290 30661348 ~ 30666037 (-) True XLOC_012195
TCONS_00024020 mRNA upstream 107569 30700627 ~ 30702411 (-) True XLOC_012196
TCONS_00024021 mRNA upstream 242018 30835076 ~ 30839338 (-) True XLOC_012197
TCONS_00024011 other downstream 369043 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 936251 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 1300491 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 1348661 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1761934 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00024018 other upstream 28362 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 307714 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 312656 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 759137 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 791376 31384434 ~ 31384548 (-) True XLOC_012208

Expression Profile

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