RNA id: TCONS_00024930


Basic Information

Item Value
RNA id TCONS_00024930
length 2408
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_012190
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30398949 ~ 30409759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGGGGCCCACTCAGCAACAACTTTCGTGGGTGGAAGTTATCAGTTCGTCCTTCAGCTCGGTTAGTGCTGTCCATGTGATGGGGTTTGGGGATCGTCCATTGGCGATAGTACAGTGACTGTTCAGTGCAGGTCATCATCTTGCTGAGCAGGGGTCTAAAGGAGCTGACCCACTCCACTGAAGGGTGAGGGAGGAAAGAAGTAGACTTGGGCAGACCACTGGAATCCACAGTGGTGATAAGGTCGTAGACGGTTTTAGGAAGCAGCACCACAGGCGGACGGCTGAGATTACGTGCCCAGGAGCAGCTCTGCCGAAGAGGAGAGGCTCGTGTGGACGAAGAGCCAGACGAGGTGGATTTGGACTGTCGCCTCTGCTTGGGCTGCTTTTCTGAATCCAGAGGATTACAGTCAGGCTGTGGGCGCTGAGAGGCAGCTGGGGAGGCCTGGTTACCCAGCTTAGGAAGATCGCTGTTTACTATAGACCACCAGAGAGAGGCAAGATTGATGTTTACACACATTTGGGAAAAGTCTGAAACGAAGACTGGACGAAAGAAACGAAAAAGGTACTTGATTTATTGTCAGTAGACCAGTGCATTTCTAACTGTAATGATACAAAGATAATAAAAAATCAGTTAAAAGTCAccatttcattttaaatcaatatagattttgattgattgagtgattgTTTCTGTTTATTAGAAATATCCCCAAAGGAAGAAACTGTTCTACCCATGTGCACATGCAGTCATTTGAGGTGGATAGTCTCCATTTCCTCTTTCTTGGGAAAGAATCCTCTTCCTCCCCAAAGCTGTGCTGAAGACTGAAGATGATATAAGGTTGAGCTGACTAACATCTTGATATTCTTCCTCCTTAATTACCTCAAAGTTTAGGGCAGGGGTGGTGTGCTTTGACCATGACAATGTCTATTTAATTTAGTGTAAAAATGATCTCTATGCTGTAATATTTTCCCAAGCATTTCACAGTAAATGGTTTATGCTTATGTATTCTAGCTTTGCAATACTGACCATCCACCACAACCTCTTCCTCCTCGTTGTCAGTGCTGCTGAGTTTTTCAGGGTCACTCTCAGAGAGGTCACTGGGTGCGTTCGGCCCATGCTGGCCATCTTGTTTTGTCTTGAGTATGTAGGCAGCTAGTCCCAGCTCCTGCTCCAGGGTGGTGCGCTGCAGAGACCAGCAGCTGATAACACGCAGGTCACAATACTTCAGAGATCTGAGGACAGAGGAACAACATAGGTGTGAGGTAAGCCTAAATGTGGTCATACATCGAATGAAAATCCAAACGTATGGATTAGATATGTTCATGTCAAGGTGCAAGGCCTGTCATGATAAGGAACTTTTGTTGTGCGATATATTGTCATAGAAAATGATGTGATAAGCgaaattattatcatattattgttgattttaatCATGATTTTAACAgtttatgccactgattatataatgattaaataaaagcataataatgcaaatagccaaactttttaaaatacttaacattcttaaggttatttagattctatAATCTGATGAAAAAGGTGATTGTCTCATTATATATACGAATTAACGTCCTATTAGGtaaatgtccaattataaacTTTGACACTGGTAAGGTtgaatgtaaatgtcattgtaaaataGCTTTAaccttatttgtaaatatatattgcaatggcaAAAAAATATTAAGCTCATCTCCAAGTATTGCACGATAAGTCGAtaaattgattattgtgacaggtcaACAAGGCACCAAACAAACAGTCCAAAACAATCTCTCCAATCATCAAATATGGCAAAATTCAACAATACAAGATTAGCATTGTACATTCATATAAAATagagtattcatgtttttaaagatGTGGTGTGCAACTCGTATAGGACAAACCATGAAAATAAAGCTGTTGTGTTATAATTTTAGGTACTATTTCCTATGAATTACTAATGAATTTCCAAGACTTAATTAATAACCACTGAATGAAACAGCTCTCTTTGTGCTTTCAAATCAATTCTTGTTCGCATGTTTTTCTCCTCATGATctcaaaaaaacaatatatagcttaaaacatGACGTTTACAATTCAACACATGATCAATATAGAATATTATATAATGTAGTATTGTGATTAAAGTGATAATACAATCtgtcattaaaaaacaaacaactcaCTCACCATTTGAAAGAAAACTAAACAAATGtgacaacataaaataattttttaaaagaccTTAAATTGCCTCAGGTAATTATTTTTCTGAGGTCTTGCTGACCTCTGTACAGATTTACCAACCATTTtctaagtaaacaaacaaaatagatTAGCAAGCTTTAAAAGGCCCATTTCTGGGTAAACAGTTCTaggtaaataattaaacatttt

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024923 lncRNA downstream 33777 30306215 ~ 30369525 (-) False XLOC_012189
TCONS_00024925 lncRNA downstream 33777 30326532 ~ 30369525 (-) False XLOC_012189
TCONS_00024926 lncRNA downstream 33777 30353737 ~ 30369525 (-) False XLOC_012189
TCONS_00024924 lncRNA downstream 33951 30326532 ~ 30369351 (-) False XLOC_012189
TCONS_00024927 lncRNA downstream 34047 30364855 ~ 30369255 (-) True XLOC_012189
TCONS_00024014 lncRNA upstream 62652 30472411 ~ 30473361 (-) True XLOC_012191
TCONS_00024931 lncRNA upstream 163813 30573572 ~ 30592749 (-) False XLOC_012193
TCONS_00024932 lncRNA upstream 163813 30573572 ~ 30593058 (-) True XLOC_012193
TCONS_00024026 lncRNA upstream 491013 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024034 lncRNA upstream 570207 30979966 ~ 30981050 (-) False XLOC_012200
TCONS_00024012 mRNA downstream 36597 30307454 ~ 30366705 (-) False XLOC_012189
TCONS_00024010 mRNA downstream 198000 30140099 ~ 30205302 (-) False XLOC_012187
TCONS_00024007 mRNA downstream 501115 29797876 ~ 29902187 (-) False XLOC_012184
TCONS_00024008 mRNA downstream 525966 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024006 mRNA downstream 667283 29732153 ~ 29736019 (-) True XLOC_012181
TCONS_00024013 mRNA upstream 59985 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024015 mRNA upstream 63748 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024016 mRNA upstream 195060 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024017 mRNA upstream 195761 30605520 ~ 30635298 (-) False XLOC_012194
TCONS_00024019 mRNA upstream 251589 30661348 ~ 30666037 (-) True XLOC_012195
TCONS_00024011 other downstream 198773 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 765981 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 1130221 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 1178391 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1591664 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00024018 other upstream 211661 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 491013 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 495955 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 942436 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 974675 31384434 ~ 31384548 (-) True XLOC_012208

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU435834 True 360 lncRNA 0.46 2 CI01000189 2787880 ~ 2788744 (-)
mexican tetra (Astyanax mexicanus) TU435834 True 1152 lncRNA 0.33 2 NW_019172875.1 437056 ~ 438227 (-)