Gene
RNA
| Item | Value |
|---|---|
| gene id | G398229 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000242 |
| NCBI id | null |
| chromosome length | 629286 |
| location | 42398 ~ 42639 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU456711 | True | 242 | lncRNA | 0.27 | 1 | 42398 | 42639 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000242_00037939_00038523 | NA | coding | downstream | 3459 | 37552 ~ 38939 (-) |
| CI01000242_00025780_00032789 | NAALAD2 | coding | downstream | 9609 | 25722 ~ 32789 (-) |
| CI01000242_00054328_00061612 | TYR | coding | upstream | 10582 | 53115 ~ 61966 (-) |
| CI01000242_00209467_00209713 | NA | coding | upstream | 166620 | 209259 ~ 209713 (-) |
| CI01000242_00230847_00255610 | NA | coding | upstream | 188208 | 230847 ~ 256208 (-) |
| CI01000242_00264251_00267773 | NA | coding | upstream | 220574 | 263213 ~ 267773 (-) |
| CI01000242_00272088_00293729 | NA | coding | upstream | 228767 | 271406 ~ 293729 (-) |
| G398211 | NA | non-coding | downstream | 7277 | 34798 ~ 35121 (-) |
| G398231 | NA | non-coding | upstream | 826 | 43465 ~ 43974 (-) |
| G398234 | NA | non-coding | upstream | 5635 | 48274 ~ 48495 (-) |
| G398236 | NA | non-coding | upstream | 8234 | 50873 ~ 51260 (-) |
| G398241 | NA | non-coding | upstream | 19432 | 62071 ~ 62333 (-) |
| CI01000242_00300190_00331091 | NA | other | upstream | 259286 | 300147 ~ 331091 (-) |
