G398216


Basic Information

Item Value
gene id G398216
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 157922 ~ 164528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU456696
TCAAAAGTATCTTAAAAGCAATTTTATTATAGATCATGACCACAGATACAGAGATACACAGATACAAAGGCAAAAATCAAAGATTGTGATAAAACCCTTGGATTCATCTAGTCCTGAGCAGCTTGTCTTTTGGCAAATAGCCTGACAGGACTCAATATACATGCACATCCCTTTAGTCTATTGCTATTGATAAAGTGATTGTTCATTAATCCACAAGTACTGATTTTCCTGAGAACAATTGCCAACTTGATATTCTCTGAATACAAAATGACGTCATGTCCAATTAAAACAGTGGTGCAAAAATGTATGCAGCAGAGTGCAAATGTGACATTCAGAGCTCACATGGATCAATGAAAATTTAAAATCCCTTTTTTCTAAAAACCACACTTTAAGCAGTTGTCGCAGCACCTGAAGGCACCCAAATTTCATTAGCGCAGATCCAGCAAGAGAAAATTAAATGGCCTTTTTGTCATTCACACGGTTCTTGTGGAAATCCACACTAACAGAACAAATAAACAAAAGGACAACAATGTTGGTGTGTTTGAGAGGAAGAAATTGAATGGATGCAGACAGCAGGTCAGTTGCAACAAAACACAGCACAGTGGAATTTATGTAGGTCTTGCCTCTTGATTAAGACGGTTACATCAATTTAAAGCCATAACTAGACTCTAGACAGGGTTGTTTTTGGCTGACAGCAACAATTGGAAGCGCAGGTGACCCAAGACAAAAACATGACAGGCTGAATCAGAGCGAGAGTTTTTCCAAGGCATACAGACAGCTCAGAGGAAGATGACATCTGGGGAATTTTCAAGCTCCAAGATTCATTCTCAGGTGGATCTGAGCAAAAAAACATCCTGACTAGATGCTTCGAGATGAAGGGACAGAAACAGAGTGGATCCACTATTGTTCTTTAAAAAGGCTGCCGACAACAGAAGGGACAGTAAAAGGCACAGAAGATGAACAAATTCCCTAGAGGCCAGCAACAGGAAAAGTCAAACCTCTGGAGACAGAGTTGACGTCAAATGTCACATGGAACCAGACCCAAGAGAAGAACCTTGAAGCCAAAGTGAAACGCTTTGAAGAAGGCTGAAGTTGGTTTAAAGATTCATAATGTTTGAGAAATGGGGAAATGAGACAGAATCAAGTCTATCGGGTCTTGTAATTTCACATGTTCACACCATTTACTATGAAAAGGAACCTGAAAGAGAGAAAGATGAATTACAGGACAGTGAATTTATTATTCTACATGGCTTCTTTGATCACCTAACCTGCTGGTCATGGGCAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGTGCGGTTTTGTTCATGCATTAACTTCAAACAGTAGACTAAAAGATTATTTCTTGGGATTTAAGAAATGACACTGGTTGATCAAAATCAATATTTTTAACTGCACCAGA
>TU456697
TCAAAAGTATCTTAAAAGCAATTTTATTATAGATCATGACCACAGATACAGAGATACACAGATACAAAGGCAAAAATCAAAGATTGTGATAAAACCCTTGGATTCATCTAGTCCTGAGCAGCTTGTCTTTTGGCAAATAGCCTGACAGGACTCAATATACATGCACATCCCTTTAGTCTATTGCTATTGATAAAGTGATTGTTCATTAATCCACAAGTACTGATTTTCCTGAGAACAATTGCCAACTTGATATTCTCTGAATACAAAATGACGTCATGTCCAATTAAAACAGTGGTGCAAAAATGTATGCAGCAGAGTGCAAATGTGACATTCAGAGCTCACATGGATCAATGAAAATTTAAAATCCCTTTTTTCTAAAAACCACACTTTAAGCAGTTGTCGCAGCACCTGAAGGCACCCAAATTTCATTAGCGCAGATCCAGCAAGAGAAAATTAAATGGCCTTTTTGTCATTCACACGGTTCTTGTGGAAATCCACACTAACAGAACAAATAAACAAAAGGACAACAATGTTGGTGTGTTTGAGAGGAAGAAATTGAATGGATGCAGACAGCAGGTCAGTTGCAACAAAACACAGCACAGTGGAATTTATGTAGGTCTTGCCTCTTGATTAAGACGGTTACATCAATTTAAAGCCATAACTAGACTCTAGACAGGGTTGTTTTTGGCTGACAGCAACAATTGGAAGCGCAGGTGACCCAAGACAAAAACATGACAGGCTGAATCAGAGCGAGAGTTTTTCCAAGGCATACAGACAGCTCAGAGGAAGATGACATCTGGGGAATTTTCAAGCTCCAAGATTCATTCTCAGGTGGATCTGAGCAAAAAAACATCCTGACTAGATGCTTCGAGATGAAGGGACAGAAACAGAGTGGATCCACTATTGTTCTTTAAAAAGGCTGCCGACAACAGAAGGGACAGTAAAAGGCACAGAAGATGAACAAATTCCCTAGAGGCCAGCAACAGGAAAAGTCAAACCTCTGGAGACAGAGTTGACGTCAAATGTCACATGGAACCAGACCCAAGAGAAGAACCTTGAAGCCAAAGTGAAACGCTTTGAAGAAGGCTGAAGTTGGTTTAAAGATTCATAATGTTTGAGAAATGGGGAAATGAGACAGAATCAAGTCTATCGGGTCTTGTAATTTCACATGTTCACACCATTTACTATGAAAAGGAACCTGAAAGAGAGAAAGATGAATTACAGGACAGTGAATTTATTATTCTACATGGCTTCTTTGATCACCTAACCTGCTGGTCATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGGTCAACTAACTGAAATAAGTTTGAGTTGGAAAAAAATACAAGCTAATTCAAAGTATTAATTTGACTTACATATTATAATACATACTATAGTAGTAATAATACTAAAATAACACTGAAACTGAAAGTTTGCTGGGGAAATACATGAGAAACAGCCAAACACAGACTAGGGGAAAAGCCTGTAATTTCCTGGTAGTGTTTCTAGAATCACTTGTCAGGCTGTTCCAGTAAGAACAGCTACATCACAGTCAATAACACACACTTCCAGGATTTTAGATTGATCACAATCAATAGTAGCACATTGATGTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU456696 False 1439 lncRNA 0.38 2 157922 164528
TU456697 True 1633 lncRNA 0.37 2 158736 164528

Neighbor

gene id symbol gene type direction distance location
CI01000242_00054328_00061612 TYR coding downstream 95956 53115 ~ 61966 (-)
CI01000242_00037939_00038523 NA coding downstream 118983 37552 ~ 38939 (-)
CI01000242_00025780_00032789 NAALAD2 coding downstream 125133 25722 ~ 32789 (-)
CI01000242_00209467_00209713 NA coding upstream 44731 209259 ~ 209713 (-)
CI01000242_00230847_00255610 NA coding upstream 66319 230847 ~ 256208 (-)
CI01000242_00264251_00267773 NA coding upstream 98685 263213 ~ 267773 (-)
CI01000242_00272088_00293729 NA coding upstream 106878 271406 ~ 293729 (-)
CI01000242_00300190_00331091 NA coding upstream 135630 300147 ~ 331091 (-)
G398241 NA non-coding downstream 95589 62071 ~ 62333 (-)
G398236 NA non-coding downstream 106662 50873 ~ 51260 (-)
G398234 NA non-coding downstream 109427 48274 ~ 48495 (-)
G398231 NA non-coding downstream 113948 43465 ~ 43974 (-)
G398277 NA non-coding upstream 77894 242422 ~ 247743 (-)
G398222 NA non-coding upstream 104440 268968 ~ 270424 (-)
G398297 NA non-coding upstream 143711 308239 ~ 308700 (-)

Expression


Co-expression Network