CI01000244_00049224_00062275 (GRIK1B, GRIK1, GRIK2)


Basic Information

Item Value
gene id CI01000244_00049224_00062275
gene name GRIK1B, GRIK1, GRIK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000244
NCBI id null
chromosome length 62968
location 49210 ~ 62275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000244_00049224_00062275.mRNA
GCTCAGTGGAACGGACTGACCGGACAGATAATCATAAACAAGACGGACGGCCTGAGGAAAGATTTCGATCTCGACATCATCAGTCTGAAAGAGGATGGGATGGAAAAGCAGTTTATGGAAAGTGGTCGTTTTAACAAAGTGTGGAAGAAGATTGGTGTGTGGAACTCAAACACTGGCCTTAACCTGACAGACAGCAACAAAGACAAAAACGCCAACGTGACCGACTCCATGGCCAACCGGACACTTATTGTCACCACAATTCTGGAAAACCCGTATGTGATGTACAAGAAGTCAGATAAGCCGCTGTATGGGAACGACCGGTTTGAAGGCTACTGTTTGGACCTGCTGAAGGAATTGTCCAACATCCTGGGCTTTTCCTATGAGGTCAAACTGGTGTCTGATGGGAAATATGGAGCCCAGAATGACAAAGGAGAGTGGAACGGCATGGTCAGAGAGCTAATCGATCATGTGGCAGATTTGGCCGTAGCACCGCTCACCATCACTTACGTGAGAGAGAAAGTCATTGATTTTTCCAAGCCCTTCATGACTCTGGGAATCTCTATTCTCTACCACAAACCCAATGGCACCAATCCAGGCGTGTTCTCCTTCCTAAACCCGCTCTCTCCGGACATCTGGATGTATGTGCTGCTGGCCTGCCTCGGGGTCAGCTGTGTGCTGTTCGTCATCGCCAGGTTTACCCCGTATGAATGGTACAACCCTCATCCCTGCAACCCTGATTCTGATGTGGTTGAGAACAACTTCACTTTAATCAACAGTGTTTGGTTTGGGGTTGGAGCCCTTATGCAGCAAGGTTCGGAGTTAATGCCCAAGGCTTTGTCCACCAGGATTGTTGGAGGGATCTGGTGGTTCTTCACCCTCATCATCATCTCGTCCTACACGGCTAACCTGGCCGCCTTCCTCACCGTGGAGCGAATGGACTCGCCCATAGACTCGGCCGATGACCTGGCCAAACAGACCAAGATCGAGTACGGTGCCGTGAGGGACGGCTCCACTATGACTTTCTTTAAGAAATCAAAGATCTCCACCTATGAGAAGATGTGGGCGTTCATGAGCAGCCGGAAGAACACGGCGCTGGTGAAGAATAACAGAGAGGGCATCCAGCGTGTGCTGACCACAGACTACGCTCTTCTGATGGAGTCCACCAGCATCGAGTACATCAGCCAGAGAAACTGCAACCTCACACAGATCGGCGGCCTCATCGACTCGAAGGGCTACGGAGTGGGAACTCCTATCGGTTCCCCGTATCGTGACAAGGTGACCATCGCCATCCTGCAGTTACAGGAAGAGGGGAAGCTCCACATGATGAAGGAGAAGTGGTGGCGAGGAAACGGATGTCCCGAGGAGGACAGTAAAGAGGCCAGCGCTCTGGGCGTGGAGAACATCGGAGGAATCTTCATCGTGCTGGCGGCCGGACTCGTCCTCTCCGTGTTTGTGGCGATCGGGGAGTTCATCTATAAGTCCAGGAAGAACCTGGACATCGAAGAGATGGATGTTCAGTCTGCATCTGAAACTAATATGGACTGTGAATTGAGTTCAAGTATTTTATTATTGATCCACTTTGGTGATGGGCTTATACTGAGAAAACACCATCATTGATTTCTATCAATAAA

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).
grik1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).
grik1 Enables kainate selective glutamate receptor activity. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; modulation of chemical synaptic transmission; and positive regulation of gamma-aminobutyric acid secretion. Predicted to be located in dendrite; postsynaptic density; and presynaptic membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Predicted to be integral component of presynaptic membrane. Implicated in childhood absence epilepsy.

NR:

description
glutamate receptor 5

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000244_00049224_00062275.mRNA True 1631 mRNA 0.50 10 49210 62275

Neighbor

gene id symbol gene type direction distance location
G398616 NA non-coding downstream 15814 30714 ~ 33396 (-)
G398599 NA non-coding downstream 20397 24904 ~ 28813 (-)
G398601 NA non-coding downstream 27536 19887 ~ 21674 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008769 grik1b coding NC_007126.7 CM002899.2 42599501 ~ 42679838 (+)
bowfin (Amia calva) AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding CM030121.1 CM030121.1 27492506 ~ 27506149 (+)