XLOC_008769 (grik1b)


Basic Information

Item Value
gene id XLOC_008769
gene name grik1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42599501 ~ 42679838 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017425
ATGGATGTTAAATGTTCCTCCCGCAGGTGTGCGCTGCTGAAGCGGACAGGTGTGAGTTTCATCCTGCTGTGTCTGATGGCGGAGGTCGGTCTCAGCGCGCAGCAGGTCCTCAGAATCGGTGGGATTTTCGAGACGCTCGAGAATGAACCGATTAGCGTGGAGGAACTTGCCTTCAAATTCGCTGTGACCAACATTAACAGAAACAGGACTTTAATGCCCAACACGACCCTGACCTACGACATCCAGAGAATCAACCTTTTTGACAGCTTCGAGGCCTCCAGACGAGCCTGTGATCAGCTGGCTCTCGGTGTGGCCGCAGTGTTCGGGCCGTCCCACAGTTCTTCAGTGAGTGCGGTTCAGTCCATCTGCAATGCGCTGGAGGTTCCTCACATCCAGACCCGCTGGAAACACCCGTCCGTGGACAACAAAGACAGCTTTTACATCAACCTGTACCCGGATTACGCCTCCATCAGCCGCGCCGTGCTGGACATCGTGCAGTTCTACAAGTGGAAAGCCGTGACGGTGGTTTACGAGGACGCTACAGGGCTCATTCGTCTTCAGGAGCTGATCAAGGCTCCGTCCCGGTACAGTATCAAGATCAAAATCCGCCAGTTACCGACGGGCAGTAAAGACGCTCGGCCGCTTCTGAAAGAGATGAAGAAGGGGAAGGAGTTTTGTGTCATCTTTGACTGCTCGTATCAAACGGCAGCAGACGTCCTCAAACAGCTGTTGTCAATGGGCATGATGACCGAATACTACCACTTCTTCTTTACCACTCTGGATCTGTATTCGCTGGACCTGGAGCCGTTTCGATACAGTGGTGTGAACATGACTGGTTTCCGTCTGCTCAACATCGACAATCCTCAGGTGGCGTCAGTGGTGGAGAAATGGTCCATGGAGAGACTGCAGGCTCCACCCAAACCTGAGACCGGCCTGCAGGATGGAATGATGACAactgAAGCAGCTCTGATGTATGACGCAGTGTATATGGTGGCGGCTGCGTCTCAACGAGCGTCTCAGATCACCGTCAGCTCACTGCAGTGTCACAGACACAAACCCTGGCGATTCGGCTCGCGATTCATCAGCATGTTTAAAGAGGCTCAGTGGAACGGTCTGACCGGTCAGATCATCATCAACAAAACAGACGGCCTGAGGAAAGACTTCGACCTGGACATCATCAGCCTGAAAGAGGACGGTTTGGAGAAGCCGTTGGAGAGCGGCCGTTTTAACAAAGTGTGGAAGAAGATTGGAGTGTGGAACTCAAACACGGGTCTGAATCTGACAGACAGCAACAAGGACAAAAACACCAACGTGACCGATTCCATGGCCAACCGAACGCTCATCGTCACCACAATCCTGGAAAACCCGTATGTGATGTACAAGAAGTCGGATAAGCCATTGTATGGGAACGACCGCTTCGAGGGCTACTGTCTGGACCTGCTGAAGGAGCTCTCCAACATCCTGGGCTTCTCTTACGAGGTCAAACTCGTGACCGACGGAAAATACGGAGCCCAGAACGATAAAGGAGAGTGGAATGGCATGGTCCGAGAGCTCATCGATCATGTGGCAGATCTGGCCGTGGCTCCGCTCACCATCACTTACGTTCGAGAGAAAGTCATCGATTTCTCCAAGCCCTTCATGACTCTGGGGATCTCCATTCTCTACCACAAACCCAACGGCACCAATCCAGGCGTTTTCTCCTTCCTGAACCCGCTTTCTCCAGACATCTGGATGTATGTTCTTCTGGCCTGCCTCGGGGTCAGCTGTGTGCTCTTCGTCATCGCCAGGTTTACTCCGTACGAGTGGTATAATCCTCATCCGTGTAACCCAGACTCAGATGTGGTGGAGAATAACTTTACCCTGATCAACAGTGTGTGGTTCGGTGTTGGAGCTCTGATGCAGCAAGGATCGGAGCTGATGCCCAAGGCTTTATCCACAAGGATTGTGGGAGGAATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCATACACTGCAAACCTCGCTGCTTTCCTGACCGTGGAGAGAATGGACTCTCCCATCGACTCTGCTGATGACCTGGCCAAGCAGACCAAGATTGAGTATGGCGCTGTGAGGGACGGATCCACCATGACCTTCTTTAAGAAGTCGAAGATCTCTACATATGAGAAGATGTGGGCGTTCATGAGCAGCCGGAAGAACACAGCGTTGGTGAAGAACAACCGCGAAGGCATCCAGCGGGTCTTGACCACTGATTACGCTCTCCTGATGGAGTCCACCAGCATCGAGTACATCAGCCAGAGGAACTGCAACCTCACGCAGATCGGGGGACTCATCGACTCTAAGGGATATGGCGTCGGCACTCCCATCGGCTCTCCGTACCGTGACAAGGTGACGATCGCCATCCTTCAGCTGCAGGAGGAAGGAAAGCTGCACATGATGAAGGAGAAATGGTGGAGAGGAAACGGCTGTCCTGAGGAGGACAGTAAAGAAGCCAGCGCTCTCGGTGTGGAGAATATCGGAGGAATCTTTATCGTGCTGGCGGCTGGACTCGTGCTCTCCGTCTTCGTGGCAATCGGAGAATTCATCTACAAGTCCAGAAAAAACCTGGACATCGAGGAGGTGAGCGTCGGACAGTGCGAATGGCACAACAAATACTGA
>TCONS_00017426
GTGGGATTTTCGAGACGCTCGAGAATGAACCGATTAGCGTGGAGGAACTTGCCTTCAAATTCGCTGTGACCAACATTAACAGAAACAGGACTTTAATGCCCAACACGACCCTGACCTACGACATCCAGAGAATCAACCTTTTTGACAGCTTCGAGGCCTCCAGACGAGCCTGTGATCAGCTGGCTCTCGGTGTGGCCGCAGTGTTCGGGCCGTCCCACAGTTCTTCAGTGAGTGCGGTTCAGTCCATCTGCAATGCGCTGGAGGTTCCTCACATCCAGACCCGCTGGAAACACCCGTCCGTGGACAACAAAGACAGCTTTTACATCAACCTGTACCCGGATTACGCCTCCATCAGCCGCGCCGTGCTGGACATCGTGCAGTTCTACAAGTGGAAAGCCGTGACGGTGGTTTACGAGGACGCTACAGGGCTCATTCGTCTTCAGGAGCTGATCAAGGCTCCGTCCCGGTACAGTATCAAGATCAAAATCCGCCAGTTACCGACGGGCAGTAAAGACGCTCGGCCGCTTCTGAAAGAGATGAAGAAGGGGAAGGAGTTTTGTGTCATCTTTGACTGCTCGTATCAAACGGCAGCAGACGTCCTCAAACAGCTGTTGTCAATGGGCATGATGACCGAATACTACCACTTCTTCTTTACCACTCTGGATCTGTATTCGCTGGACCTGGAGCCGTTTCGATACAGTGGTGTGAACATGACTGGTTTCCGTCTGCTCAACATCGACAATCCTCAGGTGGCGTCAGTGGTGGAGAAATGGTCCATGGAGAGACTGCAGGCTCCACCCAAACCTGAGACCGGCCTGCAGGATGGAATGATGACAactgAAGCAGCTCTGATGTATGACGCAGTGTATATGGTGGCGGCTGCGTCTCAACGAGCGTCTCAGATCACCGTCAGCTCACTGCAGTGTCACAGACACAAACCCTGGCGATTCGGCTCGCGATTCATCAGCATGTTTAAAGAGGCTCAGTGGAACGGTCTGACCGGTCAGATCATCATCAACAAAACAGACGGCCTGAGGAAAGACTTCGACCTGGACATCATCAGCCTGAAAGAGGACGGTTTGGAGAAGCCGTTGGAGAGCGGCCGTTTTAACAAAGTGTGGAAGAAGATTGGAGTGTGGAACTCAAACACGGGTCTGAATCTGACAGACAGCAACAAGGACAAAAACACCAACGTGACCGATTCCATGGCCAACCGAACGCTCATCGTCACCACAATCCTGGAAAACCCGTATGTGATGTACAAGAAGTCGGATAAGCCATTGTATGGGAACGACCGCTTCGAGGGCTACTGTCTGGACCTGCTGAAGGAGCTCTCCAACATCCTGGGCTTCTCTTACGAGGTCAAACTCGTGACCGACGGAAAATACGGAGCCCAGAACGATAAAGGAGAGTGGAATGGCATGGTCCGAGAGCTCATCGATCATGTGGCAGATCTGGCCGTGGCTCCGCTCACCATCACTTACGTTCGAGAGAAAGTCATCGATTTCTCCAAGCCCTTCATGACTCTGGGGATCTCCATTCTCTACCACAAACCCAACGGCACCAATCCAGGCGTTTTCTCCTTCCTGAACCCGCTTTCTCCAGACATCTGGATGTATGTTCTTCTGGCCTGCCTCGGGGTCAGCTGTGTGCTCTTCGTCATCGCCAGGTTTACTCCGTACGAGTGGTATAATCCTCATCCGTGTAACCCAGACTCAGATGTGGTGGAGAATAACTTTACCCTGATCAACAGTGTGTGGTTCGGTGTTGGAGCTCTGATGCAGCAAGGATCGGAGCTGATGCCCAAGGCTTTATCCACAAGGATTGTGGGAGGAATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCATACACTGCAAACCTCGCTGCTTTCCTGACCGTGGAGAGAATGGACTCTCCCATCGACTCTGCTGATGACCTGGCCAAGCAGACCAAGATTGAGTATGGCGCTGTGAGGGACGGATCCACCATGACCTTCTTTAAGAAGTCGAAGATCTCTACATATGAGAAGATGTGGGCGTTCATGAGCAGCCGGAAGAACACAGCGTTGGTGAAGAACAACCGCGAAGGCATCCAGCGGGTCTTGACCACTGATTACGCTCTCCTGATGGAGTCCACCAGCATCGAGTACATCAGCCAGAGGAACTGCAACCTCACGCAGATCGGGGGACTCATCGACTCTAAGGGATATGGCGTCGGCACTCCCATCGGCTCTCCGTACCGTGACAAGGTGACGATCGCCATCCTTCAGCTGCAGGAGGAAGGAAAGCTGCACATGATGAAGGAGAAATGGTGGAGAGGAAACGGCTGTCCTGAGGAGGACAGTAAAGAAGCCAGCGCTCTCGGTGTGGAGAATATCGGAGGAATCTTTATCGTGCTGGCGGCTGGACTCGTGCTCTCCGTCTTCGTGGCAATCGGAGAATTCATCTACAAGTCCAGAAAAAACCTGGACATCGAGGAGGTGAGCGTCGGACAGTGCGAATGGCACAACAAATACTGA

Function

symbol description
grik1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070821-1 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).

Ensembl:

ensembl_id ENSDARG00000040627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017425 False 2640 mRNA 0.53 16 42599501 42679838
TCONS_00017426 True 2522 mRNA 0.53 15 42626957 42679838

Neighbor

gene id symbol gene type direction distance location
XLOC_008768 NA coding upstream 2111 42595624 ~ 42597390 (+)
XLOC_008767 cldn17 coding upstream 5065 42559910 ~ 42594436 (+)
XLOC_008766 tiam1b coding upstream 48345 42397125 ~ 42551156 (+)
XLOC_008764 scaf4b coding upstream 252292 42285643 ~ 42347209 (+)
XLOC_008765 BX322538.1 coding upstream 284746 42314628 ~ 42314755 (+)
XLOC_008770 slc8a2b coding downstream 87965 42767803 ~ 42981467 (+)
XLOC_008771 NA coding downstream 311562 42991400 ~ 42991648 (+)
XLOC_008772 acsl3a coding downstream 315213 42995051 ~ 43078542 (+)
XLOC_008773 NA coding downstream 412984 43092822 ~ 43100399 (+)
XLOC_008774 flj13639 coding downstream 486673 43166511 ~ 43198413 (+)
XLOC_008463 BX663520.1 misc upstream 21347219 21252191 ~ 21252282 (+)
XLOC_008763 BX322538.2 non-coding upstream 318742 42262701 ~ 42280759 (+)
XLOC_008761 NA non-coding upstream 368271 42230088 ~ 42231230 (+)
XLOC_008760 NA non-coding upstream 373780 42219583 ~ 42225721 (+)
XLOC_008775 NA non-coding downstream 524017 43203855 ~ 43208245 (+)
XLOC_008779 CABZ01073033.1 non-coding downstream 1149551 43829389 ~ 43829517 (+)
XLOC_008781 NA non-coding downstream 1265882 43945720 ~ 43946407 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000244_00049224_00062275 GRIK1B, GRIK1, GRIK2 coding CI01000244 null 49210 ~ 62275 (-)