XLOC_008770 (slc8a2b)


Basic Information

Item Value
gene id XLOC_008770
gene name slc8a2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42767803 ~ 42981467 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017427
CGCAGAGAGGGAAAGACACTCATATCAGCACAACCGGAGCAGTTTTCAATGAATTACCCAGCAGCAACATGCGCTTCGCAGCCACGCCTGCCCTGAACAACACCGCAAACTAGGATACAAGGTCCACTTCTTCTTCATATCTTCTCTGAACTCTGAAACCCGTAGAGGAGTGAGATCATGGCCCGCTTTTCCTCTGTCTTTCTGAGTCTCGTCCTGCTCTTGTCTCTGCCCTGGTCCTGCTCTCCTGAATCTCAGAGGGAAGAGCCGTCCATCCAGCCCTCCATCATTCCGGAATATTCCACTGAGCCCTACAGTAACCTGACGGATGACGGCGCTGCGCTCAACAAGCCCTGCAGTGACCCAGTAGAGTGTAAACCTGGGATCCTCCTGCCGGTGTGGAAACCCGTCAATCCCGGTCTGGTGGAGCAGATCGTCCGTGCCATCATCTACTTCGTATCACTCATGTACATGTTTCTGGGAGTCTCCATCATCGCTGACAGATTCATGGCGTCTATTGAGGTCATCACATCACAGGAAAAAGAGGTGACCATCACCATGCCGAATGGAGAAACCTCAGTGGCCACAGTGAGAATCTGGAATGAAACGGTGTCCAATCTGACTCTGATGGCGCTGGGATCATCGGCTCCTGAAATCCTCCTGTCGGTCATTGAGgtctgCGGTCATGGGTTTAAATCTGGAGAGCTGGGTCCGGGCACCATTGTGGGCAGCGCTGCCTTCAATATGTTTGTGATCATTGGCATCTGCGTGTGGGTGATTCCTGAAGGGGAAGTGCGCAAGATCAAGCATCTCAGAGTCTTCTTCATCACAGCCTTCTGGAGCATCTTCGCTTACATCTGGCTCTACCTGATCCTGTCCGTCATCTCACCTGGAATCGTGgaggtatGGGAAGCTCTGGTCACTCTCTGCTATTTCCCCGTCTGTGTGATTCTGGCGTGGATTGCTGACCGGCGCCTGCTTTTCTACAAGTACATGTCCAAGCGCTACCGTGCCGACAAAAGGACAGGGGTTGTCGTGGAGACGGAGGGGGAAATGACCCCGAAAGGGATGGAGATGATGATGGACGGCAAGTTTCCACTGAGAGCCGGAGACATTGGAATCGGCACACAGGAACATTACCAGGATGGGACCGGCCACACAACCGGCACCATGGCAACGCTGCCCAACTCCAACAGCACCACCGTTTACATGGACGGTGTCAAAGACCTGGACGAGAGCCGCAAAGAAGTGATCCGTATCCTGAAGGACTTAAAGCAGAAATATCCAGACAAGGAGTTGGATCAGCTGGTGGAGTTGGCCAACTACTACGCGCTCCTCCATCAGCAGAAAAGCCGCGCCTTTTACCGCGTCCAGGCCACGCGCATGATGATCGGGGCTGGGAATGTGCTGAAGAAACACGCAGCCGATCAATCTCGCCGTGCCGTGGTGGTAGGTGGAGACGAGGCGTTGGAGGAAGAAGACCTGGCTGTCTGCAGCCGCATTTCCTTCGAGAGCCCACACAGCCAGTGCATGGAGAACTGCGGATCCATCATGATACCTGTGGTTTGCCGTGGAGGTTTGGGGGAGAGTACTTTTTACGTCGACTACTGTACTGAAGACGGCACAGCCAACGCTGGCTCAGATTACGAGTATTGTGAAGGGACGCTGGTGTTCAAACCAGGAGAAACCAGGAAAGATATTAAGGTTGGCATCATTGATGATGATATCTTTGAGGAAGATGAGCATTTCTTTGTGCGTTTGCTGAACCTGCGTATTGGTGATGCCGAGGGCATGTTTGAGAGTGATGACATGGATCAGGGTCCCAAGGCCCGACTGGTGGAACCGCTGATGGCCACAGTCACCATCCTGGACGACGACCACGCAGGGATCTTCACCTTTACAGACCGCATGATGCGGGTAAGCGAGTGCGTGGGCACCATGGAGGTGACAGTGGTCCGAAACTCTGGCGCCCGCGGAACCGTGATCATTCCGTACCACACAGAGCCCGGGACAGCCCAAGGTGGAGGAGTCGACTATGAGGACACACACGGAGAGCTGGAATTCACCAATGACCAGACAACtcaaaCTCTTCAGGTGAGGATCATTGATGATGAGGAGTACGAGAAGCATGAGAATTTCTTCATCGTTCTGGAGGAGCCGCGGTGGCTGAAGAGGGGGatctcagaggaTGCAGAAGGTCAGTTGAGTGCAGAGGAAGAGGAGGCCCGGAGGATTGCAGAAATGGGCAAACCCGTCCTGGGGGAACACAGCCGGCTGGAGGTGGTCATCGAGGAGTCTTACGAGTTCAAGAGCACCGTTGATAAGCTGATCAAGAAGACCAACCTGGCGCTGGTGATCGGCACTCACTCCTGGAGAGAGCAGTTTGTGGAGGCCGTGACGGTCAGCGCAGGTGACggtgatgaagatgatgaggagGGTCGAGAGGAGCATCCGCCGTCCTGCTCTGATTACGTCATGCATTTTCTGACGGTCTTCTGGAAGGTTTTGTTTGCGTTCGTTCCTCCCACCGAGTACTGGAACGGCTGGGCCTGTTTCGTGGTTTCCATCACGGTGATCGGGCTCCTGACGGCCGTCATCGGGGATCTGGCGTCGCACTTTGGCTGCACTGTGGGCCTGCGGGACACCGTCACCGCCGTGGTGTTTGTGGCGCTCGGCACTTCCATACCAGacacatttgCCAGCAAAGTGGCTGCAAAGCAAGATCAGTACGCAGACGCCTCCATCGGAAACGTCACTGGCAGCAATGCCGTCAATGTGTTTCTGGGTATCGGAGTGGCCTGGTCGGTAGCAGCCGTGTACTGGGCCGTCCAGGGAAAGCGATTCAACGTGGACCCTGGCTCTCTGGCCTTCTCCGTCACCCTCTTCACTATCTTTGCCTTCATCTGCATGGCGGTGCTGCTGTTCCGGCGCCGGCCGTCGATCGGAGGAGAGCTGGGCGGCCCTCGAGTCTCCCGACTGCTCACTACACTCCTATTTCTGGGTCTGTGGTTCCTCTACATCCTATTCTCCAGCCTGGAGGCCTACTGCCACATCGAGGGCTTCTGAACAGCTTTCTTTTCCAACATGCACTGATGTTTACCCTCAAATCGAGAGGCTCCGTTTTACGTGACACACAAATTTGCACACACTTTAGGAAAACACGTGAATTGCTGAACGCACTACTAATATCGGTAGAGAATCTGAAGTTGTAGGAATAAAAGATGAGGAAGCAAAGCATGTAGCAAAAGAGGGCAACGATGAGTGTAATGTAGTTAAAAAAGGAACGATGCTGTAAATTAGTCTTACATCTTTTGGTCTCGAGGGAAGAATTGACTTTCAATTTGCATTGTCActaaacagttttttatttatggtTCAAGGGCACAATTAATCAGAGtagagattttaaaaaagagtCCTCAGAACTATAGTGACGCTAATAAAAATGCACAAGCGTTAAC
>TCONS_00017428
GAAAAAGAGGTGACCATCACCATGCCGAATGGAGAAACCTCAGTGGCCACAGTGAGAATCTGGAATGAAACGGTGTCCAATCTGACTCTGATGGCGCTGGGATCATCGGCTCCTGAAATCCTCCTGTCGGTCATTGAGgtctgCGGTCATGGGTTTAAATCTGGAGAGCTGGGTCCGGGCACCATTGTGGGCAGCGCTGCCTTCAATATGTTTGTGATCATTGGCATCTGCGTGTGGGTGATTCCTGAAGGGGAAGTGCGCAAGATCAAGCATCTCAGAGTCTTCTTCATCACAGCCTTCTGGAGCATCTTCGCTTACATCTGGCTCTACCTGATCCTGTCCGTCATCTCACCTGGAATCGTGgaggtatGGGAAGCTCTGGTCACTCTCTGCTATTTCCCCGTCTGTGTGATTCTGGCGTGGATTGCTGACCGGCGCCTGCTTTTCTACAAGTACATGTCCAAGCGCTACCGTGCCGACAAAAGGACAGGGGTTGTCGTGGAGACGGAGGGGGAAATGACCCCGAAAGGGATGGAGATGATGATGGACGGCAAGTTTCCACTGAGAGCCGGAGACATTGGAATCGGCACACAGGAACATTACCAGGATGGGACCGGCCACACAACCGGCACCATGGCAACGCTGCCCAACTCCAACAGCACCACCGTTTACATGGACGGTGTCAAAGACCTGGACGAGAGCCGCAAAGAAGTGATCCGTATCCTGAAGGACTTAAAGCAGAAATATCCAGACAAGGAGTTGGATCAGCTGGTGGAGTTGGCCAACTACTACGCGCTCCTCCATCAGCAGAAAAGCCGCGCCTTTTACCGCGTCCAGGCCACGCGCATGATGATCGGGGCTGGGAATGTGCTGAAGAAACACGCAGCCGATCAATCTCGCCGTGCCGTGGTGGTAGGTGGAGACGAGGCGTTGGAGGAAGAAGACCTGGCTGTCTGCAGCCGCATTTCCTTCGAGAGCCCACACAGCCAGTGCATGGAGAACTGCGGATCCATCATGATACCTGTGGTTTGCCGTGGAGGTTTGGGGGAGAGTACTTTTTACGTCGACTACTGTACTGAAGACGGCACAGCCAACGCTGGCTCAGATTACGAGTATTGTGAAGGGACGCTGGTGTTCAAACCAGGAGAAACCAGGAAAGATATTAAGGTTGGCATCATTGATGATGATATCTTTGAGGAAGATGAGCATTTCTTTGTGCGTTTGCTGAACCTGCGTATTGGTGATGCCGAGGGCATGTTTGAGAGTGATGACATGGATCAGGGTCCCAAGGCCCGACTGGTGGAACCGCTGATGGCCACAGTCACCATCCTGGACGACGACCACGCAGGGATCTTCACCTTTACAGACCGCATGATGCGGGTAAGCGAGTGCGTGGGCACCATGGAGGTGACAGTGGTCCGAAACTCTGGCGCCCGCGGAACCGTGATCATTCCGTACCACACAGAGCCCGGGACAGCCCAAGGTGGAGGAGTCGACTATGAGGACACACACGGAGAGCTGGAATTCACCAATGACCAGACAACtcaaaCTCTTCAGGTGAGGATCATTGATGATGAGGAGTACGAGAAGCATGAGAATTTCTTCATCGTTCTGGAGGAGCCGCGGTGGCTGAAGAGGGGGatctcagaggaTGCAGAAGGTCAGTTGAGTGCAGAGGAAGAGGAGGCCCGGAGGATTGCAGAAATGGGCAAACCCGTCCTGGGGGAACACAGCCGGCTGGAGGTGGTCATCGAGGAGTCTTACGAGTTCAAGAGCACCGTTGATAAGCTGATCAAGAAGACCAACCTGGCGCTGGTGATCGGCACTCACTCCTGGAGAGAGCAGTTTGTGGAGGCCGTGACGGTCAGCGCAGGTGACggtgatgaagatgatgaggagGGTCGAGAGGAGCATCCGCCGTCCTGCTCTGATTACGTCATGCATTTTCTGACGGTCTTCTGGAAGGTTTTGTTTGCGTTCGTTCCTCCCACCGAGTACTGGAACGGCTGGGCCTGTTTCGTGGTTTCCATCACGGTGATCGGGCTCCTGACGGCCGTCATCGGGGATCTGGCGTCGCACTTTGGCTGCACTGTGGGCCTGCGGGACACCGTCACCGCCGTGGTGTTTGTGGCGCTCGGCACTTCCATACCAGacacatttgCCAGCAAAGTGGCTGCAAAGCAAGATCAGTACGCAGACGCCTCCATCGGAAACGTCACTGGCAGCAATGCCGTCAATGTGTTTCTGGGTATCGGAGTGGCCTGGTCGGTAGCAGCCGTGTACTGGGCCGTCCAGGGAAAGCGATTCAACGTGGACCCTGGCTCTCTGGCCTTCTCCGTCACCCTCTTCACTATCTTTGCCTTCATCTGCATGGCGGTGCTGCTGTTCCGGCGCCGGCCGTCGATCGGAGGAGAGCTGGGCGGCCCTCGAGTCTCCCGACTGCTCACTACACTCCTATTTCTGGGTCTGTGGTTCCTCTACATCCTATTCTCCAGCCTGGAGGCCTACTGCCACATCGAGGGCTTCTGA

Function

symbol description
slc8a2b Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human SLC8A2 (solute carrier family 8 member A2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0098703 calcium ion import across plasma membrane biological_process
GO:0030001 metal ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0042383 sarcolemma cellular_component
GO:0030424 axon cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0005432 calcium molecular_function
GO:0015491 cation molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-209 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human SLC8A2 (solute carrier family 8 member A2).

Ensembl:

ensembl_id ENSDARG00000100592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017427 False 3458 mRNA 0.53 12 42767803 42981467
TCONS_00017428 True 2529 mRNA 0.56 10 42933236 42981072

Neighbor

gene id symbol gene type direction distance location
XLOC_008769 grik1b coding upstream 87965 42599501 ~ 42679838 (+)
XLOC_008768 NA coding upstream 170413 42595624 ~ 42597390 (+)
XLOC_008767 cldn17 coding upstream 173367 42559910 ~ 42594436 (+)
XLOC_008766 tiam1b coding upstream 216647 42397125 ~ 42551156 (+)
XLOC_008764 scaf4b coding upstream 420594 42285643 ~ 42347209 (+)
XLOC_008771 NA coding downstream 9933 42991400 ~ 42991648 (+)
XLOC_008772 acsl3a coding downstream 13584 42995051 ~ 43078542 (+)
XLOC_008773 NA coding downstream 111355 43092822 ~ 43100399 (+)
XLOC_008774 flj13639 coding downstream 185044 43166511 ~ 43198413 (+)
XLOC_008775 NA coding downstream 222388 43203855 ~ 43208245 (+)
XLOC_008463 BX663520.1 misc upstream 21515521 21252191 ~ 21252282 (+)
XLOC_008765 BX322538.1 non-coding upstream 453048 42314628 ~ 42314755 (+)
XLOC_008763 BX322538.2 non-coding upstream 487044 42262701 ~ 42280759 (+)
XLOC_008761 NA non-coding upstream 536573 42230088 ~ 42231230 (+)
XLOC_008760 NA non-coding upstream 542082 42219583 ~ 42225721 (+)
XLOC_008779 CABZ01073033.1 non-coding downstream 847922 43829389 ~ 43829517 (+)
XLOC_008781 NA non-coding downstream 964253 43945720 ~ 43946407 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000242_00546022_00570147 SLC8A2A, SLC8A2B, SLC8A2 coding CI01000242 null 545037 ~ 570383 (-)