XLOC_008773


Basic Information

Item Value
gene id XLOC_008773
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43092822 ~ 43100399 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018793
TGGTTCTGTTGTGATAAATGAGCAGATTTGGCAGCTCTGCGCACTTGGACTCCATTAAACGTCATCAGCATTGTGACTGAGCTCTGGCCGAGGAGGGACGTGAGGATCTCGACTCCCTCAACCTCTGTCACAGATCCCGCTGGCGCGTGTCCACGTCTGAGAGACACTATTTAAACAGCACTCGCATGACATACCCTTACAGTCCAGAGAGAGAAGCGGGAGACAGACTGACGCGTCCAGGGTGAAACATCCCGGTGAGTAAATACTGCTGCTCCGTGGAGTCTCACGACACTTTAC
>TCONS_00017431
ACAGACTGACGCGTCCAGGGTGAAACATCCCGGTAACAGTTCCTGTTTCTGTCGTTATGGATTTGGCGCGCAACGCCACCGCGCTTTCATCGCCTCAGAACAGCAGAATCCCCTTATCCGGCGGAAGCGACAATAACGCATACCTGTACATCGTCATCGTGGTGTCCTTCTACGGAGTTTTCCTCATCGGGATCATGCTCGGTTATTTGCGCACCAAACGGCGCGAGAAAAGGCGCTCAAACGCGTTCACGAGGCTCCTGCACGAGGAGGAGCAGCGCGAGTGGGGCGCGCGCCAGAAAAAGCACAGTTTCAGCCTGCCTGCGTTTCCCGCGCTGCGCTCCACGCCGGTGCCTTTCATGTTGAGCAGCGGGCGCGCGCCTCTGGCATGCGCACTCTGCTCGGTGGAGCAAAGCAGCGTGAGCTCTCTCAGCTCCGGAGCGGATGTGCGTTTCGCCATAGAAGAAGAGTCAGACAGCGGCGGACATGAGGAGACACCAAAAACCGGCTCGGGATCGGAAAACAACAGCGCCGGGTCGTCAGTGGAAAACCGGCTCTGAGATTCCCGTTCCCGCCGCGAGACGTTATATCGCAACTGCAGTTCCCGCCTAAATGCAGTAATGGAGCCTTTTTCCATTTTCCATTATCACAGTTAATGTTATTACAAATTAAGCCATCTGAGGTTGGACTTAGGGACTGCTGTgataagaaataaacaaaaaagcattttgtaCATGTTTTAAACACcttcttttgttaatttattgtgtaaataactaataatttgGCAGGAACTGTGATTAATTTGTTAGGAACCATGactaaacaaactaacaaaagttCTCCTGAGTGCCTTAGTGAAAAGTATGAACTCTTACGCCAGAAATATACTTTTACACAAGCGCTAACTGTAGTTCATACAGTTTTACACTGCAGTTTTTTTTCAGATCAGACCACAACAGTGTATCGTTCACAGAAATCAGTCTCTGAGGTTCCTGCCATGGCAATAGTTCCTACTGAAATGAAGAAAACGCCACAGTTAATCTTACTACAAATTAAACGTTCTGAGGTTGGTCCTAGTGACTGTTGTAATaagaaataaaagtatttttgtaCATCTTAACAACCTACTTGTGTAAATAACTCCAGTAATTTGTCGGGAATTGTGGTTACTGTTCATTTGTTAGGATCCATGGCGAAACAAACTAACAAAGTTCTCCTAAGTGCCTTGGTGGAAAGTATGAACTCTTATACCAGAAATATACTTTTACACAAGCACTAAGTGTAGTGTCTACACTGCAGTTTTTTTAGATCAGACCACAACAGTGATGGTTTATCTGCAGAAAAAATGGCTCTGAGGTTTCCTCCATGATACGTTACTATGGCAACCATAGTTCCTATTTACCACAGTTAATCCTACTACAAATTAAACATCTGTGGTTGGTCCTAGCGACTGTTGTAATAAGAAATAAACACGAgtgtttttatagttttttttaaagacctaCATGTGTAAATAACTGGTATTTTAGCAGGAACTGTGGGTACTGTTCATTTGTTAGGATTCATGGCGAAACAGCTCCTGAGTGCCTTGGTGAAAAGTATAAACTCTTAAACCAGAAACATTTACACAAACACTAAGTGTAGTACATAAAGTTCTGCGCTGTGCAGTTTTTTCAGATCAGAACACAATAGTGATGGGTTGTTTGCAGAAAAACGGTTCCCGCCGCCAGACATTACTATGGCAACCATAGTTCCTACCAAAATGCAGTTAGTACCACAGTTAATCTTACTACAAATTAAACGGTCTGTGGTTGGCCCTAGTGAATGTTGtaatatgaaataaacaaaagagtgtttttattaattattttaaggaCCTACTTGGGTAAATAACTAGTAATTTGGCAGGAACTGTGGTTACTGTTTATTTGTTCTCCTGTTAATTCGTTAAAGTTCTACTGAGTGCCTTGGTAGAACATATGAACACTTATGCcagaaatatacatttacacaagtgTACAAGCACTAACTGTAGTACTGTGCAGTTTTTTTGCCTTCACTTATGAAAATTTACCATGGTTTTGGCAAGTTGATTGATGTCTACATCCaaagttttactacaaatacGTTGGCTAAACAGGTTACTGTAGTGAAAACTATGGTTCATTTTTGGTTATTATTTAActgtaaaatatgattttttttaatgaaaaacaatGGTTAAATTTCGTGTCCGCTTGTTTAGTCGTGACGCTTCGGTGacatatggaatactgtttctgcATCCAAGCGGCTCTTGgttaaatttagaaaatatttgtttatgaccactttttagtcatatcagtttataaaaaattaatcactttctggccatcggatattaggcatggatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagtgatCATGATTTtcgtattacatcgctttgtaaaagtttattattatcatttgatgagtctccccatacagtttgatatagtgtttggacccagaagccgctttatgtgacgtcacacttaacaagcggataggtcaTGGTGGCACAAATCTAAACTAACGGCTATTTTTGAcactttagtggctaattgtacatttatataataatttaagatttttttaaatgatgtatgaACTTCCTTGCTTCTACATGaacatccagcctgatctcacgagaaaacgtaagtattttacgtgttgccagtttagtggctaattcgtatgagttcagtcgtacgaaatagtgcgattttaaaaaggaggcatggcacctaaccgtcattgggggatgagcaaatcgtactaaattgtatgaataagattgtacgaattagccactaagtcaaaaagttacgaattgccgtaagattgtGTTGGAACATCACAAATAAATTCGAACAGATTAGCCACCAATTCGTCAAAACAAAAAGTTAGCAACTTATTGCTCATGTTGAGAAAAATACTAAGTACTAGCTACAGGTTCAGATGATTATCTTCAAACTGTAGTTGGTCTAAAAACTAAAACTAGAAAACCGTTGGTATCCTATAGCTCCCCCTGTGGCAACTCTCAATGTGGCACATACTTGTGATACGCTTTAGATTTGTTACATCTGGTAATGCAATGATGCACAGAATTTCTTCAAGTACTTGTGTAAACTATATTTCAGGCCTTAAATGCAATGTTCCCACTGCAGACATGGCGATAAACCTGGAAGTCACttgaaaaatattacttttttttacttaaggCCATAACATCATCCACTTAGGCGTGTAAAAtgatgtaaatgtatgtaaagtTATCTGTATATAATGGTCTATGTGCATGGGTATGTCTATTTAAGTTCTACCTTGTTTTTATATGTTACTTTGTGCAAGCTAAATAAAAATGCTCCTCCATAA

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050419-163 Predicted to enable potassium channel regulator activity and transmembrane transporter binding activity. Predicted to contribute to delayed rectifier potassium channel activity and voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization. Predicted to be involved in several processes, including ion transmembrane transport; regulation of heart rate by cardiac conduction; and regulation of ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human KCNE4 (potassium voltage-gated channel subfamily E regulatory subunit 4).

Ensembl:

ensembl_id ENSDARG00000068257

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018793 False 297 lncRNA 0.53 1 43092822 43093118
TCONS_00017431 True 3494 mRNA 0.39 2 43093044 43100399

Neighbor

gene id symbol gene type direction distance location
XLOC_008772 acsl3a coding upstream 14280 42995051 ~ 43078542 (+)
XLOC_008771 NA coding upstream 101174 42991400 ~ 42991648 (+)
XLOC_008770 slc8a2b coding upstream 111355 42767803 ~ 42981467 (+)
XLOC_008769 grik1b coding upstream 412984 42599501 ~ 42679838 (+)
XLOC_008768 NA coding upstream 495432 42595624 ~ 42597390 (+)
XLOC_008774 flj13639 coding downstream 66112 43166511 ~ 43198413 (+)
XLOC_008775 NA coding downstream 103456 43203855 ~ 43208245 (+)
XLOC_008776 zgc:85932 coding downstream 232722 43333121 ~ 43389953 (+)
XLOC_008777 actn4 coding downstream 297918 43398317 ~ 43510872 (+)
XLOC_008778 tyr coding downstream 698859 43799258 ~ 43818697 (+)
XLOC_008463 BX663520.1 misc upstream 21840540 21252191 ~ 21252282 (+)
XLOC_008765 BX322538.1 non-coding upstream 778067 42314628 ~ 42314755 (+)
XLOC_008763 BX322538.2 non-coding upstream 812063 42262701 ~ 42280759 (+)
XLOC_008761 NA non-coding upstream 861592 42230088 ~ 42231230 (+)
XLOC_008779 CABZ01073033.1 non-coding downstream 728990 43829389 ~ 43829517 (+)
XLOC_008781 NA non-coding downstream 845321 43945720 ~ 43946407 (+)
XLOC_008783 NA non-coding downstream 965752 44066151 ~ 44070403 (+)
XLOC_008795 NA non-coding downstream 1385864 44486263 ~ 44488525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G141589 NA non-coding CI01000027 null 4989689 ~ 4995608 (-)
tiger barb (Puntius tetrazona) G108856 LOC107669903,LOC107733928,LOC107725203,LOC107558850,LOC107670090 unknown NC_056713.1 CM032082.1 22474014 ~ 22475687 (-)
mexican tetra (Astyanax mexicanus) G119159 NA non-coding NC_035910.1 CM008313.1 4077943 ~ 4078196 (-)