XLOC_008775


Basic Information

Item Value
gene id XLOC_008775
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43203855 ~ 43208245 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019056
TAGGATTCATTGcaatcaaaaaaagaaagaagaaataaatacatttaccatGTGAGATACACCTTAGAACtttatttactgtaatatttagCTCAATCTCTGGGCTGAAACGATCAGCCAGCATCAAGACTTGCGTCAGTTTTCATATTAGTGattttcatatataaaatacagaTGTTTGAGCATTGAAGCTCGATATATAGAGAGAATAACACTTCATTACTCAACTACTGAAGTAAAAGTAAGAATTAGAAAAGAAAGGAGCATAGAAAATCAGATCTTTAAGTCATTTAGAGTTATTTACAGTTTGATCAGCGCGACAAGCTTTACAATGCTTTCAACATCCGAACAGAAATAAGTTGATAAGTGATTTTACATAGTGGTTAACCTCAGCAAACGATGGGAATCCCTGAAGTGTCAATTTCAGCAAAACAGATGTtaattaatatacatattttaggAGATTCACCACAGACTCGCACGTTTTTAGAAAACTAACAAACCGAAAGCAAAACTCCCTCAGTTCTCCAGTGAGAAATTACAGTCAGTCACACACAAAAACCCCGATGTCAAGTACAAAATATGCTGTGTGACACCGCTGCTCCCAACAACTTACATTCATATCCTTACATTTCACATGaagccaaaagaaaacaaaacagagcACGAATTTATGAACAAAGCACGCAATGAGACGTTATATCAAAACGGAGATTGTGAAGCAAGCGCTTTATACAGGCAGACATTAGCAAACACTCACACAGTCGCTGTTTTTGTACCTCAGAtcgcgaacacacacacacacacacacacaatacgtGTAATTCAGTGCAAGGAGACGAGGCCGAGAGATGAAGAGAGAAAATCAGACTATAGAAATGTCGAAAGaatgtccaaaaaaaaataacagcGCTATAATTTCTGTAAACAATAACAactcttccctgctgaaaaatccagcttaaaccagcctaggctggttggctggttttagctggttgaccaggctggttttagaggggttttggccacttccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaaccagcttgaccagcctagctaagctgggagtccagccaaaaccagctagatccagcttaaatcaggctggtcaagctggttttagctggatttggctggtcattttccagccttatcactgaaaaaagtgttgcatgcagaactgttgcaaactatttatttgtgttgaatttaaacaaacaaattaagtttaataatgttcaacttaatttgtttgtttaaattcaaaacaaataaattgtttacaaccacttaacgtaaaaaaattgagtaaatccaaggaatcatctctgaattaTTTTGTTCAGTgtaccagctaagaccaggcggaaaatagctggaaaccatcctggaagtggccaaaacccctctaaaaccagcctggtcgaccagctaaaaccagccaaccagcctaggctggtttaagctggatttttcagcagagttCTCATTGGCCAGCGTGATGTTCGTTAGAGTTGTATGCTaacttaacattttaaacatCACAGCCGTTACAGCGCCACAGTTTGAATACGAAGCTATacgtttatatataattattattagcctATAAACACTAGAGATGTCAATCCACAAATATCAATTCTGTCATAGTTTACTCGAGCAATAAGcattacagggatagttcacccagacaTGCATTAACCTTCCAATTGTTTCAAACCCgagtttcttgcttctgttgaacacaaaataagatatttcaaagaatgttgggAGCCACTTACATCCATtgcatttttttctactatggaagtcaatggcttccaACATTCCTcagtcaaaatatcttcttttgtgctcaacagaatgaGGAAACTCACAAGTTTTGAACTACTTGAGGGTTAAGAAATTGAGAGTAAATTATAATTCTGgggtgtttttattcatttaaaaggtGTTATTTCACTTCATAGTGAAATTTACTAATTAATCAACATTAATTTACTCTTTCtacacttgtttaaaacctgtttgagtttcttctgttgaacagaaaagtagttattttgaagaatgttggaaagggGTAGCCATTGACTCCATCGTAAGGCTaccaacatatttctaaatattttcttttgcgttcaacagaagaaagtatctcataaaagtttgaaaccacaCAAGGGAGAGTAATCTTTCAGGTGGAATCCCTTTCAATTTGATTTCTTTATGAAAAAATTTGGGTGAACTTTGCAAAAATAGTGACAGAAATCTCTCTTATTTGTTTAAGATATCATCATTcgcattttaatgtaaataacttGTGAAGCTGGAAGgaaacaagggtgagtaaatgatgaccgttTTCATTTTGGAGGGAAAAACCCAGCATTGTGTCAGGAATCATTatccttaaaggggtagttcacccaaaaaagaaatttCTGACACCTTTCACTTATCCCAGATTTCTTCCAAACCACACAAGGGAGAGACATTTTTTGGGTAAAATACCTTTAACTTTGATTTCTTTACAAAATTTTCAGGTGCACATTTctctcttttgttgaacacaaaggaaggtaTTTTGTAAAATGTAGAAAACCTGTAGCCACTGACTACCATAATATGATTTTTCCAACTATGGCTGTCAATTTATATCAATTATTTAAAGCGTCAGCTGAACAAAAAACTCCTGGAGCCACGTAAAGGTTAGGAAACactaaataaaatgtcatttttggctgaacagTTGCTCTAATATAGTCATAAATACTACTATAAATGTTTGTTCTTATTATTTCTCATTTTTGAAAACAATCGCTGATCATATACAGAGCACAGGGCTCATTTTATAAACCGTTCTGGAGCTCTTACCCTCATTAATTTCCATTGTATGGAAAGAGCAGCGTTAACATTCTGCTCAACATCTCGATTTCTGTTTCACAGAATAAAGCTGGCAGTATAGATTTAATAACTAGTAAATGTTGACAATTAACAAATTTGGCAAACCATGGCTTTGATTTGTCCCTAAATAAATGACGATTAATGCTATAAATAGTGTTTTACAACAGAACACTACAACACATCACATACTAACTTAATCCGTTTAATCAGAATCATTGATTACGCTACATGTAATGACCCTCACCTACCTGACCTGAACCGTCTGTCTCAAAGTTTGAACTTAATCacgcttttgtttgtttttgtttgattctttttttttcttttttttttttggagggaatTGTTTGTTTGAAAAAGTTCTATGGTTGCTACGGAACACTTGTTTCCATGGTAACATGATTGGTGGTTACTATGGAAAGTACTAGCATTC
>TCONS_00019057
actgtaatatttagCTCAATCTCTGGGCTGAAACGATCAGCCAGCATCAAGACTTGCGTCAGTTTTCATATTAGTGattttcatatataaaatacagaTGTTTGAGCATTGAAGCTCGATATATAGAGAGAATAACACTTCATTACTCAACTACTGAAGTAAAAGTAAGAATTAGAAAAGAAAGGAGCATAGAAAATCAGATCTTTAAGTCATTTAGAGTTATTTACAGTTTGATCAGCGCGACAAGCTTTACAATGCTTTCAACATCCGAACAGAAATAAGTTGATAAGTGATTTTACATAGTGGTTAACCTCAGCAAACGATGGGAATCCCTGAAGTGTCAATTTCAGCAAAACAGATGTtaattaatatacatattttaggAGATTCACCACAGACTCGCACGTTTTTAGAAAACTAACAAACCGAAAGCAAAACTCCCTCAGTTCTCCAGTGAGAAATTACAGTCAGTCACACACAAAAACCCCGATGTCAAGTACAAAATATGCTGTGTGACACCGCTGCTCCCAACAACTTACATTCATATCCTTACATTTCACATGaagccaaaagaaaacaaaacagagcACGAATTTATGAACAAAGCACGCAATGAGACGTTATATCAAAACGGAGATTGTGAAGCAAGCGCTTTATACAGGCAGACATTAGCAAACACTCACACAGTCGCTGTTTTTGTACCTCAGAtcgcgaacacacacacacacacacacacaatacgtGTAATTCAGTGCAAGGAGACGAGGCCGAGAGATGAAGAGAGAAAATCAGACTATAGAAATGTCGAAAGaatgtccaaaaaaaaataacagcGCTATAATTTCTGTAAACAATAACAactcttccctgctgaaaaatccagcttaaaccagcctagTTTGAATACGAAGCTATacgtttatatataattattattagcctATAAACACTAGAGATGTCAATCCACAAATATCAATTCTGTCATAGTTTACTCGAGCAATAAGcattacagggatagttcacccagacaTGCATTAACCTTCCAATTGTTTCAAACCCgagtttcttgcttctgttgaacacaaaataagatatttcaaagaatgttgggAGCCACTTACATCCATtgcatttttttctactatggaagtcaatggcttccaACATTCCTcagtcaaaatatcttcttttgtgctcaacagaatgaGGAAACTCACAAGTTTTGAACTACTTGAGGGTTAAGAAATTGAGAGTAAATTATAATTCTGgggtgtttttattcatttaaaaggtGTTATTTCACTTCATAGTGAAATTTACTAATTAATCAACATTAATTTACTCTTTCtacacttgtttaaaacctgtttgagtttcttctgttgaacagaaaagtagttattttgaagaatgttggaaagggGTAGCCATTGACTCCATCGTAAGGCTaccaacatatttctaaatattttcttttgcgttcaacagaagaaagtatctcataaaagtttgaaaccacaCAAGGGAGAGTAATCTTTCAGGTGGAATCCCTTTCAATTTGATTTCTTTATGAAAAAATTTGGGTGAACTTTGCAAAAATAGTGACAGAAATCTCTCTTATTTGTTTAAGATATCATCATTcgcattttaatgtaaataacttGTGAAGCTGGAAGgaaacaagggtgagtaaatgatgaccgttTTCATTTTGGAGGGAAAAACCCAGCATTGTGTCAGGAATCATTatccttaaaggggtagttcacccaaaaaagaaatttCTGACACCTTTCACTTATCCCAGATTTCTTCCAAACCACACAAGGGAGAGACATTTTTTGGGTAAAATACCTTTAACTTTGATTTCTTTACAAAATTTTCAGGTCACCGTTTctctcttttgttgaacacaaaagaaggtatttggTAAAATGTagaaaacctgtagccattgactaccataatatgattttttttctactatggctgtcaatttatattaattattcaaagcAACAGCAGAACAAAAAACTCCTGGAATTACATGAAGGTTAGGAAACActgaataaaatgtcatttttaggtgaacaatgGCTCTAATATGGAGTAAATGACCACTTTCATTTTGGTGGGAAAAACCCAGCTTTGTGTCAAGAATCAATATTTCGAAAGAGGTAGTTCCCCCCTAAAATAATATTCAGATGCCTTTCACTTATTCTAGAtttcttccaaacctgtttaaatctctcttttgttgaacacaaatgtagatattttgaagaatgttggaaagggGTAGCttcgacttccatagtaatttttttaTGCTACGAACATTATTCACAATattttcttttgcgttcaacagaggaaagaatctcataaatgtttgaaaccacaCAAGGGAGAGTAATTTTTTTGGGAGAAATCCATTTCAATTTGATTTCTTTatgaaatttttgggtgaatatcttcatttgcattttaaagaTAGACAACGTCTGGAGCTGGAATGACAAGAGGGTGAGTAGATGATGACCATTTTCATTTTGGAGGGAAAAACCCAGCTTTGTGTCAAGAATCATTatccttaaaggggtagttcacctaaaaaagaaaattcagaCCCCTTTCACTTATTCTGGATTTCTTCCAAACCTAATTGAATttctcttttgttgaacacaaaagaaggtattttgaagaattttggaaaggggtagccattgacttccatagtagagctactaacatttttctaaatatcttcttttgcattcaacagaagcaagaatctcataaatgtttgaaaccacaCAAGGAAGAGTTTTGTTGGGTGAAATACCTTGCATTTAGATTTCTTTACGAAATATTCAGGTGCACATTTctctcttttgttgaacacaaaggaaggtaTTTTGTAAAATGTAGAAAACCTGTAGCCACTGACTACCATAATATGATTTTTCCAACTATGGCTGTCAATTTATATCAATTATTTAAAGCGTCAGCTGAACAAAAAACTCCTGGAGCCACGTAAAGGTTAGGAAACactaaataaaatgtcatttttggctgaacagTTGCTCTAATATAGTCATAAATACTACTATAAATGTTTGTTCTTATTATTTCTCATTTTTGAAAACAATCGCTGATCATATACAGAGCACAGGGCTCATTTTATAAACCGTTCTGGAGCTCTTACCCTCATTAATTTCCATTGTATGGAAAGAGCAGCGTTAACATTCTGCTCAACATCTCGATTTCTGTTTCACAGAATAAAGCTGGCAGTATAGATTTAATAACTAGTAAATGTTGACAATTAACAAATTTGGCAAACCATGGCTTTGATTTGTCCCTAAATAAATGACGATTAATGCTATAAATAGTGTTTTACAACAGAACACTACAACACATCACATACTAACTTAATCCGTTTAATCAGAATCATTGATTACGCTACATGTAATGACCCTCACCTACCTGACCTGAACCGTCTGTCTCAAAGTTTGAACTTAATCacgcttttgtttgtttttgtttgattctttttttttcttttttttttttggagggaatTGTTTGTTTGAAAAAGTTCTATGGTTGCTACGGAACACTTGTTTCCATGGTAACATGATTGGTGGTTACTATGGAAAGTACTAGCATTC

Function

GO:

id name namespace
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0042383 sarcolemma cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko03320 PPAR signaling pathway
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019056 False 3397 lncRNA 0.36 2 43203855 43208245
TCONS_00019057 True 3674 lncRNA 0.34 2 43203932 43208245

Neighbor

gene id symbol gene type direction distance location
XLOC_008774 flj13639 coding upstream 5442 43166511 ~ 43198413 (+)
XLOC_008773 NA coding upstream 103456 43092822 ~ 43100399 (+)
XLOC_008772 acsl3a coding upstream 125313 42995051 ~ 43078542 (+)
XLOC_008771 NA coding upstream 212207 42991400 ~ 42991648 (+)
XLOC_008770 slc8a2b coding upstream 222388 42767803 ~ 42981467 (+)
XLOC_008776 zgc:85932 coding downstream 124876 43333121 ~ 43389953 (+)
XLOC_008777 actn4 coding downstream 190072 43398317 ~ 43510872 (+)
XLOC_008778 tyr coding downstream 591013 43799258 ~ 43818697 (+)
XLOC_008779 CABZ01073033.1 coding downstream 621144 43829389 ~ 43829517 (+)
XLOC_008780 naalad2 coding downstream 697798 43906043 ~ 43942064 (+)
XLOC_008463 BX663520.1 misc upstream 21951573 21252191 ~ 21252282 (+)
XLOC_008768 NA non-coding upstream 606465 42595624 ~ 42597390 (+)
XLOC_008765 BX322538.1 non-coding upstream 889100 42314628 ~ 42314755 (+)
XLOC_008763 BX322538.2 non-coding upstream 923096 42262701 ~ 42280759 (+)
XLOC_008781 NA non-coding downstream 737475 43945720 ~ 43946407 (+)
XLOC_008783 NA non-coding downstream 857906 44066151 ~ 44070403 (+)
XLOC_008795 NA non-coding downstream 1278018 44486263 ~ 44488525 (+)
XLOC_008796 NA non-coding downstream 1329903 44538148 ~ 44809977 (+)

Expression


Co-expression Network