XLOC_008783


Basic Information

Item Value
gene id XLOC_008783
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 44066151 ~ 44070403 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019060
AAACCATGAACAAAACATCCTCAAACgttttaattttgtataattaagtctttaatgcatattttcattcaacaaaacaaaaacaaaaaaaaacagtgttaacATAATATTGAGCTCAATTTTTTGGTACTAGCCTAAGAAAAAAGTTCTCTCTGTAAATCAGGTAGCATTTACCACATAAACAATGAACACTATTAGTACACTGCAACAAAAACGAACCGAAAACCATTTTGAGTATTGCAACGTAATAGATCCCTTTAAAAACCTTAAAGTAAGAGAATAATGTGCCTTTGTTGATCCGGAGAGCCAATTGTGCCACACTGCCTGTGAGCTCtagcataaatacataaaatcaaaaataaataattacacaaaCACACCGTGCGGCATTTCAAACTGCTGTTGTTTCCATTTGATTCAGTTTTAACGGcacacccacaaaaaaaaaaaaagctaacaaaaacaaacatagacTAAGTTAATTGTGTTTATTGTTAAAAGTGGAACAGGCAAGGTAAAAGTGTCCCTGTTTAATTAGCTAAAAACAAGCTACTGATCGCAAAGCCTTACGACTAAGGCATAACACAGCCAGGGGGCGCTGTAGAGCTGTTCACACTTCCCGCTACACCagtattaatcaatcaatcaatcaatcattcatccTCGATCATTTTACACTCTGTACATTAAAGGCTTTGACACAGAAACGTCATTTACAAACTACTAAATTCAACCGCAACCATTCAAGCACACAGCTACGTCCAAAACACAGTACACAGTGACAAAAATATCCGTAAATAAGCAGTTTTGTGATTTTATTcagattattattgtttatttatgcttttgaattgcattattatttCTTGCGACatcttttaaccttaaaaagtgacttttattgacatttttaatagtttaaagtgatatattgtctgagttggtgttgtatattatgctataaACACTTTGTATTAGACTGCCAGctcattttctgctattttacagacttatttcaaaatatattacttcttatacattatattattacttaAAAAGTCACTTTGGTAAACTGTAGGGTTGCATTTTCGACATCAAAAGCCAACAGAGCCGAGATCAAGCTCCCatgatgcaattcacaaccgtaaataaacagaaactgttcattaacagatactTTTCACAGTGTGTGTTTCTCCATAAGACAGGCTGTGTGCTTCAAATAGGCCTGGTTTAACCGCCGTCCTGACTGTTTTGAGTTTAATAGGAAAGGTGCAGATTAAGGAAAGACCCTTTCTCTTCCGCTATAGTAGAGGCGCTTTGTAGGATTGAAAAATGTCTGAATTATTGATATGACATGGCACAGCTCGTCACTTGTTCTGTCATATTTATAAACTGCAATGAGGAACAAAAATATGGAAGTCGGGATGATTTCCGCCATGGGATAAAAAAGGCAACTTTTTTATAACACAATTTTgacattaatttagattttaggtCAAACATCTCTGACTTTCTCATCATTTGAAGGGGTGTCTTAATACTAGCGTACATGAACACTTTAGATGTTAAAGCCATTTGAAATTACCTTCTAAAATTTACTTTTTTCTCCTACCCCTGTGTGTAGGCTCAGTATTTTTACTTTTACAGTGACGGATAAGTTCTTTTCATTccctttaaagttaaataacagaaaatgaacATAGGAAGCTGAGAAAGACAAAAgctcattttaggagaacatttcaCTCGGTATTTAGAGACTTTTGCATCTGACAAGTCTTGAAAAAAGAGTTTATGTCTTGaaattctgaggaaaaaaaattGCTGATGTTTATACAAACTATGACTTTATTTCTCGCAACTGCATCTCAAATTTATAAACTATATCACTATTAGGAGAAACATCTCTTTTAAAGCTCTCAATTTTGTCAGTATTGTATACAAGATATAAACTCATTATTTGTTTATAGAACTACAACAAACTCACAGGTTAAAAGAAAAAGTGAGAAGTTTCTCTCTCAATCcagaattttattattaatatttctcacATCTGTATTGTAAATTCATTGGATTAGATTATGATTTTTATCCCTCAAAATTGCAAGAAAATAATTCCTAATGGTTTTAACTTCAAATTTATCAGATGCAAACTATAAATGTCAATTATAACAGGAAAAAGGGCAGAAATCTACAGTTTTATCTTGCAATACTTTCAGAACTGCATCTGAAGAGTTCAGTTGTCTTCTAAACGGAGCTCTTTTCTCAGGCTCCTGCGTGTAGGgttagtaatttcacttttaaggGAAAGGATTATTTTCAtcacttttaaagtgaaataactgataATAATCATAGGGCGGTGAGATAAAATGCTCATTTCAGATAAAATGTTTTAGATGGCACTatgaagtttttgcatctgaactcttcatctgTTTTTATAGTTTAATCTTAATCTCAGAATTGCAAGATGTGAACTTAAAACTGCAATTACTAACTCAGATTTCCAACATAAACCCACAAACCAGAGAAATAAGTGCACAATTAAATCTTAAATTGTAAGATATAAAATGGCAAATCGCAGAAATTATTGGTCTGAATTCTTTACAGCCTCAACGTTCTCCATGTTTAACATTTTCTTAGttactaaatataaaatataaaccttCTATAACTCAAAGTTGTGAGACACAAATGAGCCAATCTAAGACGGGgggaaaagtcagaattgcatGATGTTAACTCTTAATACCAAACACTGATTTACAATTACAGGAAAAAGCTAGAATAGGAGATAAAAATGTGCAAAAGCTTTTAATTTTATCCCATGTCGGAAATAAACTTGTATTAAAAATGCTGATCGacaaaaaaacatgaattatCAACATGTAAACTGCAAAGAAATCCCAAATCTCTGAATATCAAGCAGACTCGAATCCAAACCAGTCAAAAATACGTACGACTGAACATCAAGCAGATCGTTCACACAAAACAAACCCAAATaaagacttaaaaataaaaatagagttTTCTGCATCATTATATACGTGTGTAATATGTAAACTGAATAATCCGCAACCCAATCTACAACCACAGCGCATTGTTGGACTGAAAGATGAACTCtaagccagtgtttctcaaccacgtttctggagggccaccagctctgcacattttccatgtctgcTTAACCAAACACGAtgcagatcatcagctcattacaCTAAAAGACCAGCAATAggagtgacagacaaaggagacatccaaaatatgcagtgctggtggtcctccaggaatgtggttgagaaacactgatctaaaccCCAGTGGATCCAAAATCCTACAGCAGAACCAATAAACAACGTGCAGGAAACAAAGCGGTGAGTTAAGATGACCCAGGTATATCCCAATCAATCCACGAGTAGTTCAAGTAGAAGAGGTCTGGATGCGCTACTCTGTTTAACAACCAATCAGGACATTCGAAAGCCAACAGAAGGAAAACAAAGCAACAGTCGCAGCCCGACACAAGAGGCCAGCTTATGTTGCATTTGAGCTTGATTAATGCACAAACACGCCTGAAAACACCACCGAATATCTCTGAGATTGTGGGATTTACTTAAGCAGCTCTGCCCGGGGTGAATTATATTAATCTGCAGGACATTCAGAGGAACAAACGCAGGGGCCTCTGCATCTCCAGACGTTCGGAAGGAAAGTGAAAGGGTGAGAAGAAGAGACAGAAACAGGATTTGGGCGGAAAGGGGTCCGTTTTATATGGATCATGGTATAGCAAACTGCACCACGAGCTCTTCCTTGGCATCTACTTTGATTTGTGAGATGGCGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019060 True 3849 lncRNA 0.35 2 44066151 44070403

Neighbor

gene id symbol gene type direction distance location
XLOC_008782 lrrc51 coding upstream 3327 44053244 ~ 44062824 (+)
XLOC_008781 NA coding upstream 119744 43945720 ~ 43946407 (+)
XLOC_008780 naalad2 coding upstream 124087 43906043 ~ 43942064 (+)
XLOC_008779 CABZ01073033.1 coding upstream 236634 43829389 ~ 43829517 (+)
XLOC_008778 tyr coding upstream 247454 43799258 ~ 43818697 (+)
XLOC_008784 zgc:112998 coding downstream 22883 44093286 ~ 44098922 (+)
XLOC_008785 CU655961.2 coding downstream 63569 44133972 ~ 44143503 (+)
XLOC_008786 zgc:165514 coding downstream 113964 44184367 ~ 44189634 (+)
XLOC_008787 CU655961.3 coding downstream 120528 44190931 ~ 44193411 (+)
XLOC_008788 CU655961.4 coding downstream 130653 44201056 ~ 44205528 (+)
XLOC_008463 BX663520.1 misc upstream 22813869 21252191 ~ 21252282 (+)
XLOC_008775 NA non-coding upstream 857906 43203855 ~ 43208245 (+)
XLOC_008773 NA non-coding upstream 965752 43092822 ~ 43100399 (+)
XLOC_008771 NA non-coding upstream 1074503 42991400 ~ 42991648 (+)
XLOC_008795 NA non-coding downstream 415860 44486263 ~ 44488525 (+)
XLOC_008796 NA non-coding downstream 467745 44538148 ~ 44809977 (+)
XLOC_008797 CABZ01037139.1 non-coding downstream 790880 44861283 ~ 44861399 (+)
XLOC_008799 NA non-coding downstream 938011 45008414 ~ 45012176 (+)
XLOC_008800 NA non-coding downstream 1154534 45224937 ~ 45245369 (+)

Expression


Co-expression Network