XLOC_008796


Basic Information

Item Value
gene id XLOC_008796
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 44538148 ~ 44809977 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019062
TATTACTGTTTGTTTGAATTGCCGCTGGATAAACAAATGAAAGGGATTTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGGAACACGAAGCGGCTCCAGTCATAGTGGTCCAGCAGGCTCAGCAGGGCTCCGCG
>TCONS_00019063
GCTGGATAAACAAATGAAAGGGATTTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGagtcCCACCCAGTCCTGTCAATTGCA
>TCONS_00019064
GCTGGATAAACAAATGAAAGGGATTTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGAGTTCGTTCCATGTCGATTCCCTG
>TCONS_00019066
GCTGGATAAACAAATGAAAGGGATTTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGATGCTAATCCTCCATCATCATTTACAGTCTGATTCATCGACAGACCAATTAATGGAAGGACGAAGCGTCTGTCTGGTTATTTATAGACTGAATGCCACTCTCTACTCACAGAAGTAAAAAAATCACCCGTGGCTGGTCACCATGGAGATACAGGCGATAGTTGGCGAAAGTGCTGATGATCAGGATTGACAGGAATGTATGGAGGAAGAATGAGGGATCAATGCTAGTGTTAATCAAACAAACAGACTCTTAATGAAGGAAGAGCACGAGCCACATCGCAGAGACATGAAAACCACACTTCACCGCCTAGCAACCTGCTGACAGCTACTCCTTAGCAACCGCATAGCAGCATCCTGGCAACCATTACATCACCCTGGATCATGGTGCTCCTGAATAACCAACATGGATCAATCAGACCAGCATCTGTCATAACTCTACGAAGACAACTAAAAAGGAATCAGCCAACAATCATCCTACCGAAGCCTAAGATGGACAGATGCACGCCAAACAGCTGATGTTGAGATCAAACGCAGTCCTCTGGATCTGCAGGAGGGTGAGTTAACCGCTCTATTcagagtgaactgtccctttaatcatGGAGATTATCTGTGTGGAAGATCACATTTGTTGTTGGTGTCACCAGAGCATGAGCGTCTGCACTTGGCAGGGCCGGTGTCACGTTCTGTTTTATCATCACATCCTCCCTCTAATTATTCTCTCTTCTTTTCTGACGGACGTTTTGGCTGAACTGCAGTTTCGGGATCCCATAACGTGCTTTTATTTGCCATGAACAAAACAAGCTTTGTGCATTTGCATTGCAGCGGTATGTAAATGTCATTAGGCATTGCTTGCATCAGTGTGTATCCTGCTcggcgagagtgtgtgtgtgtgtctgtatttagCGTATTAACTTTATCAGCAGTGCTGTCAAAGGCGCACAAGTCAGCGGCCGCATCTCATTATGGCGTGAGACTCTCCATCTCAATGAGCAATGCAgtgactgaacacacacacacacacacaagacacaTCCTGCAAAAAGAGAGGGAACTGAGTGTTTGTTCATGAAGAAAGAGAGAGGGTGGGTGGGCATGCATAATGGtttgatgatattaatcaaacattgagcTGAGATCTGGAAACTTTGATAGGACTCAGATGGCAAGAGGTCATCGCATAATGAGAAAGACAAGATAAAATACTGCAGTGATGCCTTGAACTGGTGAGGGACTTTCACCAtgatgaccacacacacacacacacaccaacacaactCAACTATGAGATCCTACAAGTCAATCTGCAATTAttacattataaaagtataaaatcAACATATTTAATCACTTTTTAGGGAAAACTgaagacatttttattaattacccCAATTTTAAGAACATTCATCAACCAATTTGAGATTTTCACTTCACTCCAAAGTCATTTTTTAAAGTACCATTGGAGTTTTTAGATTATAAACAACAGCAAAACGCATTTTTGCTCCATTTAGGGTCCATTTAAGAGCAAAACCCAAATTCAACATGCATACATTTCACAATACAATGTTAGCATGATTGTAAACATGCTAAATGTCTGCATTTGTGTTGGCTACTTCTTTCTGTgtgttgtttattaatattagcaaTGTACAGTAGATCTGTTGCACCGCAATATTCCTGCCAGAATTAATGAAGTAGCATATGTCGTGTTAGAAGTGTAAACTCACCGATTTGGACACTGCTGGGAAAAGCCCCTTCACCGAGTCCCCACAGCAGCGGAATCAACACCAGGA
>TCONS_00019065
GCTGGATAAACAAATGAAAGGGATTTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGCTCCTGAATAACCAACATGGATCAATCAGACCAGCATCTGTCATAACTCTACGAAGACAACTAAAAAGGAATCAGCCAACAATCATCCTACCGAAGCCTAAGATGGACAGATGCACGCCAAACAGCTGATGTTGAGATCAAACGCAGTCCTCTGGATCTGCAGGAGGGTGAGTTAACCGCTCTATTcagagtgaactgtccctttaatcatGGAGATTATCTGTGTGGAAGATCACATTTGTTGTTGGTGTCACCAGAGCATGAGCGTCTGCACTTGGCAGGGCCGGTGTCACGTTCTGTTTTATCATCACATCCTCCCTCTAATTATTCTCTCTTCTTTTCTGACGGACGTTTTGGCTGAACTGCAGTTTCGGGATCCCATAACGTGCTTTTATTTGCCATGAACAAAACAAGCTTTGTGCATTTGCATTGCAGCGGTATGTAAATGTCATTAGGCATTGCTTGCATCAGTGTGTATCCTGCTcggcgagagtgtgtgtgtgtgtctgtatttagCGTATTAACTTTATCAGCAGTGCTGTCAAAGGCGCACAAGTCAGCGGCCGCATCTCATTATGGCGTGAGACTCTCCATCTCAATGAGCAATGCAgtgactgaacacacacacacacacacaagacacaTCCTGCAAAAAGAGAGGGAACTGAGTGTTTGTTCATGAAGAAAGAGAGAGGGTGGGTGGGCATGCATAATGGtttgatgatattaatcaaacattgagcTGAGATCTGGAAACTTTGATAGGACTCAGATGGCAAGAGGTCATCGCATAATGAGAAAGACAAGATAAAATACTGCAGTGATGCCTTGAACTGGTGAGGGACTTTCACCAtgatgaccacacacacacacacacaccaacacaactCAACTATGAGATCCTACAAGTCAATCTGCAATTAttacattataaaagtataaaatcAACATATTTAATCACTTTTTAGGGAAAACTgaagacatttttattaattacccCAATTTTAAGAACATTCATCAACCAATTTGAGATTTTCACTTCACTCCAAAGTCATTTTTTAAAGTACCATTGGAGTTTTTAGATTATAAACAACAGCAAAACGCATTTTTGCTCCATTTAGGGTCCATTTAAGAGCAAAACCCAAATTCAACATGCATACATTTCACAATACAATGTTAGCATGATTGTAAACATGCTAAATGTCTGCATTTGTGTTGGCTACTTCTTTCTGTgtgttgtttattaatattagcaaTGTACAGTAGATCTGTTGCACCGCAATATTCCTGCCAGAATTAATGAAGTAGCATATGTCGTGTTAGAAGTGTAAACTCACCGATTTGGACACTGCTGGGAAAAGCCCCTTCACCGAGTCCCCACAGCAGCGGAATCAACACCAGGA
>TCONS_00019067
TTTGAGGTAACGTTACAACTCTGAGAGGATCAGtcgatgttttttattattatcgcAGATTGTACCGACCAACACAAACTCTTGAAACCTGGAGAAGTTTTAGATGATTGGATTTAATAAGGCTCAAACCTCCGTGTTTACAATCACATCCGTACCGAGAGCTTTACTGCATCTGCGCCACACAGGAATCGCTACTATAAAATCAATCCTGCTGAGACGGACGGAGAATGAAAGACTGAAGTGttgtgagagagggagagagaggtaTGACAGACTGAGGACAAGTTTGATAGCAGTGGAGGAGACCGAGAACAAAAGACTATGAGGCCAGCGAAAGACGTGAGCAGAAAAATgaatcgTGTCTGAACAGCGGATTCTTTAGCATCGATGGAAACGAGGACGATCCTGCAGATGTAAAATTCTCCATCGCCTTAAAAAGCGCACggcagaaaagaaaaaagagaaggagaaagaaagagagagagagaggaggagcCTGCTAAGCTCCTGAATAACCAACATGGATCAATCAGACCAGCATCTGTCATAACTCTACGAAGACAACTAAAAAGGAATCAGCCAACAATCATCCTACCGAAGCCTAAGATGGACAGATGCACGCCAAACAGCTGATGTTGAGATCAAACGCAGTCCTCTGGATCTGCAGGAGGGTGAGTTAACCGCTCTATTcagagtgaactgtccctttaatcatGGAGATTATCTGTGTGGAAGATCACATTTGTTGTTGGTGTCACCAGAGCATGAGCGTCTGCACTTGGCAGGGCCGGTGTCACGTTCTGTTTTATCATCACATCCTCCCTCTAATTATTCTCTCTTCTTTTCTGACGGACGTTTTGGCTGAACTGCAGTTTCGGGATCCCATAACGTGCTTTTATTTGCCATGAACAAAACAAGCTTTGTGCATTTGCATTGCAGCGGTATGTAAATGTCATTAGGCATTGCTTGCATCAGTGTGTATCCTGCTcggcgagagtgtgtgtgtgtgtctgtatttagCGTATTAACTTTATCAGCAGTGCTGTCAAAGGCGCACAAGTCAGCGGCCGCATCTCATTATGGCGTGAGACTCTCCATCTCAATGAGCAATGCAgtgactgaacacacacacacacacacaagacacaTCCTGCAAAAAGAGAGGGAACTGAGTGTTTGTTCATGAAGAAAGAGAGAGGGTGGGTGGGCATGCATAATGGtttgatgatattaatcaaacattgagcTGAGATCTGGAAACTTTGATAGGACTCAGATGGCAAGAGGTCATCGCATAATGAGAAAGACAAGATAAAATACTGCAGTGATGCCTTGAACTGGTGAGGGACTTTCACCAtgatgaccacacacacacacacacaccaacacaactCAACTATGAGATCCTACAAGTCAATCTGCAATTAttacattataaaagtataaaatcAACATATTTAATCACTTTTTAGGGAAAACTgaagacatttttattaattacccCAATTTTAAGAACATTCATCAACCAATTTGAGATTTTCACTTCACTCCAAAGTCATTTTTTAAAGTACCATTGGAGTTTTTAGATTATAAACAACAGCAAAACGCATTTTTGCTCCATTTAGGGTCCATTTAAGAGCAAAACCCAAATTCAACATGCATACATTTCACAATACAATGTTAGCATGATTGTAAACATGCTAAATGTCTGCATTTGTGTTGGCTACTTCTTTCTGTgtgttgtttattaatattagcaaTGTACAGTAGATCTGTTGCACCGCAATATTCCTGCCAGAATTAATGAAGTAGCATATGTCGTGTTAGAAGTGTAAACTCACCGATTTGGACACTGCTGGGAAAAGCCCCTTCACCGAGTCCCCACAGCAGCGGAATCAACACCAGGA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0009451 RNA modification biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019062 False 431 lncRNA 0.45 3 44538148 44755792
TCONS_00019063 False 380 lncRNA 0.43 3 44538171 44715562
TCONS_00019064 False 378 lncRNA 0.43 3 44538171 44717625
TCONS_00019066 False 2143 lncRNA 0.42 6 44538171 44809977
TCONS_00019065 False 1757 lncRNA 0.41 5 44538171 44809977
TCONS_00019067 True 1907 lncRNA 0.42 6 44538195 44809977

Neighbor

gene id symbol gene type direction distance location
XLOC_008794 msantd4 coding upstream 44395 44472356 ~ 44493753 (+)
XLOC_008795 NA coding upstream 49623 44486263 ~ 44488525 (+)
XLOC_008793 GUCY1A2 coding upstream 134050 44366556 ~ 44404098 (+)
XLOC_008792 cwf19l2 coding upstream 189368 44283723 ~ 44348780 (+)
XLOC_008791 zgc:162962 coding upstream 282053 44250335 ~ 44256095 (+)
XLOC_008797 CABZ01037139.1 coding downstream 51306 44861283 ~ 44861399 (+)
XLOC_008798 pdgfd coding downstream 119520 44929497 ~ 44995151 (+)
XLOC_008799 NA coding downstream 198437 45008414 ~ 45012176 (+)
XLOC_008800 NA coding downstream 414960 45224937 ~ 45245369 (+)
XLOC_008801 NA coding downstream 600646 45410623 ~ 45414747 (+)
XLOC_008463 BX663520.1 misc upstream 23285866 21252191 ~ 21252282 (+)
XLOC_008783 NA non-coding upstream 467745 44066151 ~ 44070403 (+)
XLOC_008781 NA non-coding upstream 591741 43945720 ~ 43946407 (+)
XLOC_008779 CABZ01073033.1 non-coding upstream 708631 43829389 ~ 43829517 (+)
XLOC_008775 NA non-coding upstream 1329903 43203855 ~ 43208245 (+)
XLOC_008802 NA non-coding downstream 655888 45465865 ~ 45470168 (+)

Expression


Co-expression Network