Fish Transcriptome and Expression Database

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model fish

XLOC_008779 (CABZ01073033.1)

Basic Information

Item	Value
gene id	XLOC_008779
gene name	CABZ01073033.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	43829389 ~ 43829517 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017438
TTTAACCAGTCCATGCATTTTCTGGGAAACAAATGCAAATACATAAcccgcccactgaagctaagcagggctgcgcccggtcagtacctggatgggagaacacatgggaaagctaggttgctgtcgaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084946

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017438	True	129	rRNA	0.50	1	43829389	43829517

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_008778	tyr	coding	upstream	10692	43799258 ~ 43818697 (+)
XLOC_008777	actn4	coding	upstream	318517	43398317 ~ 43510872 (+)
XLOC_008776	zgc:85932	coding	upstream	439436	43333121 ~ 43389953 (+)
XLOC_008775	NA	coding	upstream	621144	43203855 ~ 43208245 (+)
XLOC_008774	flj13639	coding	upstream	630976	43166511 ~ 43198413 (+)
XLOC_008780	naalad2	coding	downstream	76526	43906043 ~ 43942064 (+)
XLOC_008781	NA	coding	downstream	116203	43945720 ~ 43946407 (+)
XLOC_008782	lrrc51	coding	downstream	223727	44053244 ~ 44062824 (+)
XLOC_008783	NA	coding	downstream	236634	44066151 ~ 44070403 (+)
XLOC_008784	zgc:112998	coding	downstream	263769	44093286 ~ 44098922 (+)
XLOC_008463	BX663520.1	misc	upstream	22577107	21252191 ~ 21252282 (+)
XLOC_008773	NA	non-coding	upstream	728990	43092822 ~ 43100399 (+)
XLOC_008771	NA	non-coding	upstream	837741	42991400 ~ 42991648 (+)
XLOC_008768	NA	non-coding	upstream	1231999	42595624 ~ 42597390 (+)
XLOC_008765	BX322538.1	non-coding	upstream	1514634	42314628 ~ 42314755 (+)
XLOC_008795	NA	non-coding	downstream	656746	44486263 ~ 44488525 (+)
XLOC_008796	NA	non-coding	downstream	708631	44538148 ~ 44809977 (+)
XLOC_008797	CABZ01037139.1	non-coding	downstream	1031766	44861283 ~ 44861399 (+)

Expression

Co-expression Network