XLOC_008784 (zgc:112998)


Basic Information

Item Value
gene id XLOC_008784
gene name zgc:112998
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 44093286 ~ 44098922 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017441
GAGGTCTGCGTGAATCACGTGATGACGAAGCGGGTTGGTCTTCCGTTGTTGTTTCCATAGTTCCTCTGTGTAGGAAGAGAATCAGTGGAGAAGCCTGAACGCGTTCAAGTCTGTACACACGGACAAATGTGGTTGATATTTACATCATCCTACAGCAGAAAACAAACTCCAGGATTGACAGCTGAAATCTGCAACACACCATGGTAAAGATGGAGATTATTAAAGTAGAGATTGATGACCTGTTTGACCCAGAATCATCCATAATAAAACAAGAAGATCCTGAAGAACAAACAGACTGGGAGGAAGATCAGCAGAGTCTTAAGCTGGATGAAGTGAAGGAGGAACTTTGCGCAATCACAACCTCAGAGGAAGCGGGCAAACAGCTGCACACCTGCTCACAGTGCGGGAAGGGGTTCAAAGACAAGGCGTACCTGAGCATACACGCCCgaatccacaccggagagaagccgcaCTCCTGCCATCAGTGCGGGAAGAGCTTCACCGTGGCGTCAAGTCTGAGTTATCATCTGCGCGTTCACTCCGGAGAAAAGCCGTTTGACTGCAGCGAGTGTGGCAAAAAGTTCAACTCGTCGTCAACTCTGAAAAACCACATGAAAGGGCACTCAGGTGAGAAGCCTTATGTGTGTGCGTCATGCGGAAAGAGCTTCTCACGACTCAGCAACTGCAAACTGCATCAGAAAACGCACAGCGATGTGAGAGAACACGTGTGCTGcgattgtgggaagagttttactaGAGTCGCTCTGCTGAAGCAGCACCAAAGGATTCACACTGGGGAAAGAccctacaagtgttcacactgcgagaaGAGTTTCACTCAATCCGGACACCTGAAAGTGCACGAGCGAGcgcacaccggagagaaaccgtaccaCTGTATACCATGCGGGAAGAGTTTTAAAGACGCATCCGGTCTCCAttatcacaaacacactcactccGGGGAAAAGCCCTTTAATTGCGAGCACTGCGGTAAAAAGTTCAACTCCTCATCGCATCTGAAATGCCACTTGAACTCTCACTCGGACGCGAGGCCTtatgtgtgttcagtgtgtgaaAAGACGTTTTCCTGGCTGAACAGTTATAAGCTGCACATGAAGACGCATAATGAAGAGAGAGAGCACGTATGCTGCGATTGTGGGAAGAGCTTCATTAGAATTAGCCTGTTGAAACTCCACCAAagggttcacactggagaaaaaccctACAAGTGCTCGTGCTGCGACAAGAGTTTCGCTCAGTACGCAAACCTGAAAGTGCACATGCGCGTTCACACCGGAGAAATGCCCTATCACTGCACTCAGTGCGGCGAGAGTTTCAGACATTCAACAAGCCTTCATAAACATAAGAAGAAGTTTTTCCATTGAGAGAAAAGCTTAGACAACG

Function

symbol description
zgc:112998 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-134 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000079760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017441 True 1407 mRNA 0.48 3 44093286 44098922

Neighbor

gene id symbol gene type direction distance location
XLOC_008783 NA coding upstream 22883 44066151 ~ 44070403 (+)
XLOC_008782 lrrc51 coding upstream 30462 44053244 ~ 44062824 (+)
XLOC_008781 NA coding upstream 146879 43945720 ~ 43946407 (+)
XLOC_008780 naalad2 coding upstream 151222 43906043 ~ 43942064 (+)
XLOC_008779 CABZ01073033.1 coding upstream 263769 43829389 ~ 43829517 (+)
XLOC_008785 CU655961.2 coding downstream 35050 44133972 ~ 44143503 (+)
XLOC_008786 zgc:165514 coding downstream 85445 44184367 ~ 44189634 (+)
XLOC_008787 CU655961.3 coding downstream 92009 44190931 ~ 44193411 (+)
XLOC_008788 CU655961.4 coding downstream 102134 44201056 ~ 44205528 (+)
XLOC_008789 CU929391.1 coding downstream 107776 44206698 ~ 44226221 (+)
XLOC_008463 BX663520.1 misc upstream 22841004 21252191 ~ 21252282 (+)
XLOC_008775 NA non-coding upstream 885041 43203855 ~ 43208245 (+)
XLOC_008773 NA non-coding upstream 992887 43092822 ~ 43100399 (+)
XLOC_008795 NA non-coding downstream 387341 44486263 ~ 44488525 (+)
XLOC_008796 NA non-coding downstream 439226 44538148 ~ 44809977 (+)
XLOC_008797 CABZ01037139.1 non-coding downstream 762361 44861283 ~ 44861399 (+)
XLOC_008799 NA non-coding downstream 909492 45008414 ~ 45012176 (+)
XLOC_008800 NA non-coding downstream 1126015 45224937 ~ 45245369 (+)

Expression


Co-expression Network