XLOC_008786 (zgc:165514)


Basic Information

Item Value
gene id XLOC_008786
gene name zgc:165514
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 44184367 ~ 44189634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017446
CGTCCAGTAGATGGCACTATTTGGCGCTTAGCAAGCAAATAATGGAAGAAGCAGCGCATGCGCAGAGGAGGAGGAGCGGGGCTAAATGAGTTGAAAGTTTGTTTGACTTTTCACATCGGGTCGTGTTTATAATTATTCGACGAACCTGCAAAGGGTTTCGGTGGATGTCTACTCGTTTTTGACAAGAACTTTCTTTGAAAACGAGGTATTTCATGGttgatgaaaaatgtttgttatatGAGTCACTGACAGCAGTTCACACCTTCAGTGGCTGACAATGAATGAATACAATCAATACTATCAATATTGATCTCATACTCCAGGTAAAACTGATGACCACAAAAGACAACAGTTTAAGGAGGAAAAGGACAGCATGAGCGATCCAGAAACACCCAGAATGAATCATGAAGATGCAGAGGATCACACAGACCAGATGGAGGTGAATGAGCAAAGAGAAGACCTGAATGAAGAGAAAGACAAACAAAGAACCAAAACAACACATCTGCACAGCTGtcgtcagtgtggaaagagtttcagaagAAAAGCCAACCTGAACATGCACAGAAAGACTCacgctggagagaaaccgtacacctgTACtgaatgtggaaagagtttctcaCGGCTGGACAGTTATAAACAGCACCAGAAAACACATGAAGACAAGAGAGATCATGAATGTTTgcagtgtgggaagagctttaCTAGAGCTGGAGGTCTGAAACGGCATcaaatgattcacactggagaaaaaccttaCAAGTGCTCATATTGTGAGAAGAGTTTCAGTCGTTCGGGACACTTGAGAGTACATGagcgaattcacactggagagaagccgtttacCTGTACTCAGTGTGGTCATGATTTTAGATTATCATCAGATTTAAAAcaacacatgagaattcacacaaATGAGAAGCCTTATGCATGTCTGTTCTGTGAAAAGAGATTTTCACGTCTGGGTCATTGTAAACAGcaccagaaaacacacactgacGAGAGAGATCATGTGTGTTCGGAGTGTGGGAAGAGCTTTATAAGAGTCGACCATCTGAAAAttcaccagaggattcacactggagaaaaacctcaCAAGTGCTCATACTGTGAgaagagtttctgtcggtcttcACATCTAAAAAGACACGAaggaattcacactggagagcaGCGGTATTGCTGTCCTCCATGTCAGAAGAGTTTCAGAAGGTTAGAAAATCTTCTCAATCATATGAAGAAATGTAAGTCGTCTCGTCACATAAACTAGTTTTCGTGTCAAATTCATTCAACAACATTGACTGAGATGAGGAAAAGGTTGAAACGATCTGAGAACTGCAGTGAAaactttgtgttgttgttgttgtctgatTAACGAcaatttttgtgatttatttacttgtttttattttattgtgttcagATTTTTCATGCCTTGCCTTGATAGCATGCTTAtggaataatacaattttatattaaAGCTTCACATTATGGTtctcttttgattttgatttgtttttttttttgcatttgattttgtattattacattttatatcaaagattttatatttgcatatttttcgaACTTCTGAATTGAATGTAATTATGCATCAAAATGAAATGACTATGGGctgttcattaaaatatttagtgATGTTGATTGAGTTCCTTTAAGATGTTTCTGATGTTTATTACCCAAGTATGTGGCGATTACAGTGTCTCCGTGGggtctttaaatgtcttaaattttcctttagcttaagcctggtttatacttctgcgtcaagtgatcggagtgacccacggcgcatgcaacgtgcgtagctgtgcattcaaggctgatttatacttctgtgtcaagcgcacgcTTATGCTGCGGCGCAGCCTACGTGTTAACACATAGCCCTACATCGTGGGCgtcgctgacgcgcacctctcaaaaaatgtagcacaagctctgtgattggtcggcttggtagcgatgatgagtctgggcgggaccgagagccgtccGAGCCCGCTGGAGCGTTTGTTTATGTAACGGAGgtcagctagtgtgtgctgtgcaggtaaactcactcctctgacctctaaacgtgctctagtgacagatgctagaggccatggtctttagactcCTTGTTCGAGCAACTGATTGCcttgcggaaggttgccggttcgataccagcttgcagcgggttgggtggtgtagaactTGTGGGGTAACATTTAAAAGTgtagagtcccgtgaaggagctccgg
>TCONS_00017445
CGTCCAGTAGATGGCACTATTTGGCGCTTAGCAAGCAAATAATGGAAGAAGCAGCGCATGCGCAGAGGAGGAGGAGCGGGGCTAAATGAGTTGAAAGTTTGTTTGACTTTTCACATCGGGTCGTGTTTATAATTATTCGACGAACCTGCAAAGGGTTTCGGTGGATGTCTACTCGTTTTTGACAAGAACTTTCTTTGAAAACGAGGTAAAACTGATGACCACAAAAGACAACAGTTTAAGGAGGAAAAGGACAGCATGAGCGATCCAGAAACACCCAGAATGAATCATGAAGATGCAGAGGATCACACAGACCAGATGGAGGTGAATGAGCAAAGAGAAGACCTGAATGAAGAGAAAGACAAACAAAGAACCAAAACAACACATCTGCACAGCTGtcgtcagtgtggaaagagtttcagaagAAAAGCCAACCTGAACATGCACAGAAAGACTCacgctggagagaaaccgtacacctgTACtgaatgtggaaagagtttctcaCGGCTGGACAGTTATAAACAGCACCAGAAAACACATGAAGACAAGAGAGATCATGAATGTTTgcagtgtgggaagagctttaCTAGAGCTGGAGGTCTGAAACGGCATcaaatgattcacactggagaaaaaccttaCAAGTGCTCATATTGTGAGAAGAGTTTCAGTCGTTCGGGACACTTGAGAGTACATGagcgaattcacactggagagaagccgtttacCTGTACTCAGTGTGGTCATGATTTTAGATTATCATCAGATTTAAAAcaacacatgagaattcacacaaATGAGAAGCCTTATGCATGTCTGTTCTGTGAAAAGAGATTTTCACGTCTGGGTCATTGTAAACAGcaccagaaaacacacactgacGAGAGAGATCATGTGTGTTCGGAGTGTGGGAAGAGCTTTATAAGAGTCGACCATCTGAAAAttcaccagaggattcacactggagaaaaacctcaCAAGTGCTCATACTGTGAgaagagtttctgtcggtcttcACATCTAAAAAGACACGAaggaattcacactggagagcaGCGGTATTGCTGTCCTCCATGTCAGAAGAGTTTCAGAAGGTTAGAAAATCTTCTCAATCATATGAAGAAATGTAAGTCGTCTCGTCACATAAACTAGTTTTCGTGTCAAATTCATTCAACAACATTGACTGAGATGAGGAAAAGGTTGAAACGATCTGAGAACTGCAGTGAAaactttgtgttgttgttgttgtctgatTAACGAcaatttttgtgatttatttacttgtttttattttattgtgttcagATTTTTCATGCCTTGCCTTGATAGCATGCTTAtggaataatacaattttatattaaAGCTTCACATTATGGTtctcttttgattttgatttgtttttttttttgcatttgattttgtattattacattttatatcaaagattttatatttgcatatttttcgaACTTCTGAATTGAATGTAATTATGCATCAAAATGAAATGACTATGGGctgttcattaaaatatttagtgATGTTGATTGAGTTCCTTTAAGATGTTTCTGATGTTTATTACCCAAGTATGTGGCGATTACAGTGTCTCCGTGGggtctttaaatgtcttaaattttcctttagcttaagcctggtttatacttctgcgtcaagtgatcggagtgacccacggcgcatgcaacgtgcgtagctgtgcattcaaggctgatttatacttctgtgtcaagcgcacgcTTATGCTGCGGCGCAGCCTACGTGTTAACACATAGCCCTACATCGTGGGCgtcgctgacgcgcacctctcaaaaaatgtagcacaagctctgtgattggtcggcttggtagcgatgatgagtctgggcgggaccgagagccgtccGAGCCCGCTGGAGCGTTTGTTTATGTAACGGAGgtcagctagtgtgtgctgtgcaggtaaactcactcctctgacctctaaacgtgctctagtgacagatgctagaggccatggtctttagactcCTTGTTCGAGCAACTGATTGCcttgcggaaggttgccggttcgataccagcttgcagcgggttgggtggtgtagaactTGTGGGGTAACATTTAAAAGTgtagagtcccgtgaaggagctccgg

Function

symbol description
zgc:165514 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-169 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000076214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017446 False 2264 mRNA 0.42 2 44184367 44189634
TCONS_00017445 True 2146 mRNA 0.42 3 44184367 44189634

Neighbor

gene id symbol gene type direction distance location
XLOC_008785 CU655961.2 coding upstream 40864 44133972 ~ 44143503 (+)
XLOC_008784 zgc:112998 coding upstream 85445 44093286 ~ 44098922 (+)
XLOC_008783 NA coding upstream 113964 44066151 ~ 44070403 (+)
XLOC_008782 lrrc51 coding upstream 121543 44053244 ~ 44062824 (+)
XLOC_008781 NA coding upstream 237960 43945720 ~ 43946407 (+)
XLOC_008787 CU655961.3 coding downstream 1297 44190931 ~ 44193411 (+)
XLOC_008788 CU655961.4 coding downstream 11422 44201056 ~ 44205528 (+)
XLOC_008789 CU929391.1 coding downstream 17064 44206698 ~ 44226221 (+)
XLOC_008790 CU929391.3 coding downstream 39283 44228917 ~ 44230508 (+)
XLOC_008791 zgc:162962 coding downstream 60701 44250335 ~ 44256095 (+)
XLOC_008463 BX663520.1 misc upstream 22932085 21252191 ~ 21252282 (+)
XLOC_008779 CABZ01073033.1 non-coding upstream 354850 43829389 ~ 43829517 (+)
XLOC_008775 NA non-coding upstream 976122 43203855 ~ 43208245 (+)
XLOC_008773 NA non-coding upstream 1083968 43092822 ~ 43100399 (+)
XLOC_008795 NA non-coding downstream 296629 44486263 ~ 44488525 (+)
XLOC_008796 NA non-coding downstream 348514 44538148 ~ 44809977 (+)
XLOC_008797 CABZ01037139.1 non-coding downstream 671649 44861283 ~ 44861399 (+)
XLOC_008799 NA non-coding downstream 818780 45008414 ~ 45012176 (+)
XLOC_008800 NA non-coding downstream 1035303 45224937 ~ 45245369 (+)

Expression


Co-expression Network