XLOC_008772 (acsl3a)


Basic Information

Item Value
gene id XLOC_008772
gene name acsl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42995051 ~ 43078542 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017429
AAATGCTAAAAATGCAATAATGCAAGTTTAACAGGTTTTGGTAATGCGTAGGCTAAAGACGGCTTTGTGCGCGCGCTCGAGTGGAAGACTGAAAACAAGCTATATGGTGTGACAAGCCTGCACACGACAAACCGACCCACCGACCGACCGGCAGTGACCCCGAGCTACGGCTACCGTGACATCACGCACCGGACCCGTGCACGCGCCACCGCGAAGAGTCCAATCACAGCGCGCGCTCCACACCCACGCGCATACAAACCACCGCGCCGCGAGCAGTGTTTACAGTGCATACTCCGCCGGACTCCACAGGTGAACAGGTGTGTTAGACTTCCAGTTCCTGTCTCTGGGGACGAATTAAgGGTCAAGAGGCTTCGCCGACCGTCTCACAGGAGAAGAGCCAAAAGAAGAGGAGGAAGTGACTTCACAACTAGGTATGTGACGATATCAGATTGTCAAATAGTCATATGGGTggtgcggtggctcagtggttagcaatgtcgcctcacagccaaaaggtctctggtttgagtcctggctggactgGGATTTCACCACATGCCTAATCACAGCTCTTCCTCTTTCCTCTGTCAGGATGAGGCTGACGCAGGATTTGAGTCCAGCCGTGGTGCTTGTTTTCAGGCTGGTGGTTTGGCTGTATTCCCTCATCTCCTACCTGCCGTACCTGTTGCTGAGATCACCTGAGTCTCAGTCGCTGTCGGAGTGCTCGCGGAGGCTGAAGGCACGGTCGGTGAGCGGAGACCCTGCAGGACCGTATCGGGATGTGGCGGCGCTGAAGGGGCTGGAGATGTGTCTGCACCCCGGGATCAACACACTGGATCAGGTGTTCCAGTCCTCCGTCTCCCACTTTCCTAACAGTGACTGTCTGGGCACCAGAGAGTTGCTGAGCGAAGAGGACGAGACTCAAGAGGATGGAAAAGTCTTTAAGAAGGTGATTCTGGGAGAGTATCGCTGGATGTCATATGAGCAGGTTTTTAAAGAAGTGAATGCTTTTGGAAGCGGTTTGGCTGCTCTTGGACAGAAACCAATGAAAAACATTGCCATCTTCTGCGAGACGAGAGCTGAGTGGATCATAGCAGCGCAGGCCTGCTTCATGTACAACTTCCCACtggtaacactttactctACTCTGGGTGGTCCTGCTATTGCTCATGGGCTCAATGAAGCCGAAGTTTCTCACATCATCACCAGCAAGGATCTTCTGGAAACCAAACTCAAGAGCATTTTCATCGAGGTGCCCAGATTGTGCCACGTCATCGTGGTTGACGATAAGCTCAGCACCAGCTCTGAATACCCACGAGGCATCAGCATCCACAGCATGGCGTCGGTGAAAGAACTTGGGGCTCGTCCTGAGAATGCGTCAAAGCCGAAAAATCCTCCATGCTCCTCTGATGTGGCTGTGATCATGTACACCAGCGGATCCACTGGAGTGCCGAAAGGAGTCATGATCTCTCACAGTAACATCATCTCTGGGATCACCGGAATGACACACAGGATTCCCAAGCTCGTtgAGGATGACACATATATTGGCTATCTTCCACTGGCTCATGTGCTGGAGTTGAGCGCTGAGATGGTGTGTTTGGCTCACGGCTGTAGAATCGGCTACTCTTCACCACAAACACTCTCAGatcagTCGACCAAGATCAAGAAGGGAAGCAGAGGAGACATCAGCGTCCTGCGGCCCACTTTGATGGCAGCAGTACCAGAAATAATGGATCGCATCTACAAGAATGTGATGCTGAGGGTGGAGCAAATGAGTGGATTTCAGAGGACTCTCTTTCTGCTGGCCTACAACTACAAGATGGAGCAGCTGGCAATGGGATACAGCACTCCACTGTGTGATAAGCTGGTGTTCAGGAAGGTTCGGGCTCTGCTGGGTGGGCGTCTGCGTGTGTTGTTGTCAGGCGGAGCTCCTCTGTCTGCGGCGACCCAGCGCTTCATGAACATCTGCTTCTGCTGTCCTGTAGGTCAGGGCTACGGCCTCACCGAGACCTGCGGCGCAGGCACCATCAGCCATCtgtgggATTACAGTACAGGGAGAGTTGGAGCACCGCTGGTCTGCTGTGAACTTCAGCTGAAGGACTGGATAGAGGGTGGATATCACAGCACAGACCTGCCCTGTCCACGAGGAGAGATCCTGGTCGGTGGGCCCAGTATAACCATGGGCTACTACAAGAACACACACAAAACCAGTGAGGACTTCTTTGTGGACAAGAAAGGCCAGCGATGGTTCTGCACCGGAGACATTGGCGAAATTCATGGAGACGGCTGCCTGAAGATCATTGACCGTAAGAAAGACCTTGTGAAGCTGCAGGCAGGAGAATACGTGTCTCTGGGAAAAGTGGAGGCGGCCCTGAAGAACTGCCCACTGGTGGACAACATCTGCGCCTATGCAAACAGTGACGAGTCTTACGTGATTGGCTTTGTGGTGCCCAATCAGAAGCAGCTCCTGGCTCTGGCGGAGAGGAAACGTGTCAGAGGTTTGTGGGAGGAGCTTTGCAACAACCCTGTCATCGAGGAGGCGGTGCTTACAGTCCTGACAGAAGCAGCACTGACAGCCCAGCTAGAAAGATTCGAGATTCCCCGGAAGATCCGCTTGAGCGTTGAGCCCTGGACCCCAGACACCGGCCTGGTTACAGACTCTTTCAAACTCAAGAGAAAGGAGCTAAAAACTCACTACCAGAACGACATCGAGAGGATGTACGGAGCCAAGTAA
>TCONS_00017430
CCAGTTCCTGTCTCTGGGGACGAATTAAgGGTCAAGAGGCTTCGCCGACCGTCTCACAGGAGAAGAGCCAAAAGAAGAGGAGGAAGTGACTTCACAACTAGGATGAGGCTGACGCAGGATTTGAGTCCAGCCGTGGTGCTTGTTTTCAGGCTGGTGGTTTGGCTGTATTCCCTCATCTCCTACCTGCCGTACCTGTTGCTGAGATCACCTGAGTCTCAGTCGCTGTCGGAGTGCTCGCGGAGGCTGAAGGCACGGTCGGTGAGCGGAGACCCTGCAGGACCGTATCGGGATGTGGCGGCGCTGAAGGGGCTGGAGATGTGTCTGCACCCCGGGATCAACACACTGGATCAGGTGTTCCAGTCCTCCGTCTCCCACTTTCCTAACAGTGACTGTCTGGGCACCAGAGAGTTGCTGAGCGAAGAGGACGAGACTCAAGAGGATGGAAAAGTCTTTAAGAAGGTGATTCTGGGAGAGTATCGCTGGATGTCATATGAGCAGGTTTTTAAAGAAGTGAATGCTTTTGGAAGCGGTTTGGCTGCTCTTGGACAGAAACCAATGAAAAACATTGCCATCTTCTGCGAGACGAGAGCTGAGTGGATCATAGCAGCGCAGGCCTGCTTCATGTACAACTTCCCACtggtaacactttactctACTCTGGGTGGTCCTGCTATTGCTCATGGGCTCAATGAAGCCGAAGTTTCTCACATCATCACCAGCAAGGATCTTCTGGAAACCAAACTCAAGAGCATTTTCATCGAGGTGCCCAGATTGTGCCACGTCATCGTGGTTGACGATAAGCTCAGCACCAGCTCTGAATACCCACGAGGCATCAGCATCCACAGCATGGCGTCGGTGAAAGAACTTGGGGCTCGTCCTGAGAATGCGTCAAAGCCGAAAAATCCTCCATGCTCCTCTGATGTGGCTGTGATCATGTACACCAGCGGATCCACTGGAGTGCCGAAAGGAGTCATGATCTCTCACAGTAACATCATCTCTGGGATCACCGGAATGACACACAGGATTCCCAAGCTCGTtgAGGATGACACATATATTGGCTATCTTCCACTGGCTCATGTGCTGGAGTTGAGCGCTGAGATGGTGTGTTTGGCTCACGGCTGTAGAATCGGCTACTCTTCACCACAAACACTCTCAGatcagTCGACCAAGATCAAGAAGGGAAGCAGAGGAGACATCAGCGTCCTGCGGCCCACTTTGATGGCAGCAGTACCAGAAATAATGGATCGCATCTACAAGAATGTGATGCTGAGGGTGGAGCAAATGAGTGGATTTCAGAGGACTCTCTTTCTGCTGGCCTACAACTACAAGATGGAGCAGCTGGCAATGGGATACAGCACTCCACTGTGTGATAAGCTGGTGTTCAGGAAGGTTCGGGCTCTGCTGGGTGGGCGTCTGCGTGTGTTGTTGTCAGGCGGAGCTCCTCTGTCTGCGGCGACCCAGCGCTTCATGAACATCTGCTTCTGCTGTCCTGTAGGTCAGGGCTACGGCCTCACCGAGACCTGCGGCGCAGGCACCATCAGCCATCtgtgggATTACAGTACAGGGAGAGTTGGAGCACCGCTGGTCTGCTGTGAACTTCAGCTGAAGGACTGGATAGAGGGTGGATATCACAGCACAGACCTGCCCTGTCCACGAGGAGAGATCCTGGTCGGTGGGCCCAGTATAACCATGGGCTACTACAAGAACACACACAAAACCAGTGAGGACTTCTTTGTGGACAAGAAAGGCCAGCGATGGTTCTGCACCGGAGACATTGGCGAAATTCATGGAGACGGCTGCCTGAAGATCATTGACCGTAAGAAAGACCTTGTGAAGCTGCAGGCAGGAGAATACGTGTCTCTGGGAAAAGTGGAGGCGGCCCTGAAGAACTGCCCACTGGTGGACAACATCTGCGCCTATGCAAACAGTGACGAGTCTTACGTGATTGGCTTTGTGGTGCCCAATCAGAAGCAGCTCCTGGCTCTGGCGGAGAGGAAACGTGTCAGAGGTTTGTGGGAGGAGCTTTGCAACAACCCTGTCATCGAGGAGGCGGTGCTTACAGTCCTGACAGAAGCAGCACTGACAGCCCAGCTAGAAAGATTCGAGATTCCCCGGAAGATCCGCTTGAGCGTTGAGCCCTGGACCCCAGACACCGGCCTGGTTACAGACTCTTTCAAACTCAAGAGAAAGGAGCTAAAAACTCACTACCAGAACGACATCGAGAGGATGTACGGAGCCAAGTAA

Function

symbol description
acsl3a Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA metabolic process; and neuron differentiation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; lipid droplet; and plasma membrane. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma; breast cancer; and prostate cancer. Orthologous to human ACSL3 (acyl-CoA synthetase long chain family member 3).

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0035336 long-chain fatty-acyl-CoA metabolic process biological_process
GO:0001676 long-chain fatty acid metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005811 lipid droplet cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004467 long-chain fatty acid-CoA ligase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-181 Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA metabolic process; and neuron differentiation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; lipid droplet; and plasma membrane. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma; breast cancer; and prostate cancer. Orthologous to human ACSL3 (acyl-CoA synthetase long chain family member 3).

Ensembl:

ensembl_id ENSDARG00000032079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017429 False 2734 mRNA 0.53 15 42995051 43078542
TCONS_00017430 True 2244 mRNA 0.53 16 42995381 43078542

Neighbor

gene id symbol gene type direction distance location
XLOC_008771 NA coding upstream 3403 42991400 ~ 42991648 (+)
XLOC_008770 slc8a2b coding upstream 13584 42767803 ~ 42981467 (+)
XLOC_008769 grik1b coding upstream 315213 42599501 ~ 42679838 (+)
XLOC_008768 NA coding upstream 397661 42595624 ~ 42597390 (+)
XLOC_008767 cldn17 coding upstream 400615 42559910 ~ 42594436 (+)
XLOC_008773 NA coding downstream 14280 43092822 ~ 43100399 (+)
XLOC_008774 flj13639 coding downstream 87969 43166511 ~ 43198413 (+)
XLOC_008775 NA coding downstream 125313 43203855 ~ 43208245 (+)
XLOC_008776 zgc:85932 coding downstream 254579 43333121 ~ 43389953 (+)
XLOC_008777 actn4 coding downstream 319775 43398317 ~ 43510872 (+)
XLOC_008463 BX663520.1 misc upstream 21742769 21252191 ~ 21252282 (+)
XLOC_008765 BX322538.1 non-coding upstream 680296 42314628 ~ 42314755 (+)
XLOC_008763 BX322538.2 non-coding upstream 714292 42262701 ~ 42280759 (+)
XLOC_008761 NA non-coding upstream 763821 42230088 ~ 42231230 (+)
XLOC_008779 CABZ01073033.1 non-coding downstream 750847 43829389 ~ 43829517 (+)
XLOC_008781 NA non-coding downstream 867178 43945720 ~ 43946407 (+)
XLOC_008783 NA non-coding downstream 987609 44066151 ~ 44070403 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000242_00508735_00531321 NA coding CI01000242 null 508561 ~ 531645 (-)
bowfin (Amia calva) AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding CM030126.1 CM030126.1 31968819 ~ 31999086 (+)