XLOC_008767 (cldn17)


Basic Information

Item Value
gene id XLOC_008767
gene name cldn17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42559910 ~ 42594436 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017422
ggaacgggagattggcatcttggatgtgcagccgacaaatctgcagcaactgcgtgatgctatcatgtcaatatggaccaaaatctctgaggaacatttctaGTATTTGTTGAATCCtgggtttcctctaggtttcacccacaagtccaaaaacatgtgctatatgtgaattgggtaagctaaattgtccttagagtatgtgtgtgagtgagagcttatgggtgtttccctgtgttgggttgcagctggaagggcatccgctgcgtaaaactggataagttcattgcgctgtggcgaacaatgaataataaatggaataagcttaaataaaatgaatgaatgaatgcaaatctTTGAGGcgattttatttgttaaatatgcAGTAATACACCAACTTACTCACTATGGCGCACAGACATTTCGTTTAACTAAACCAACCCTGAGGCGCGTTTTCATTCCAGGCCTCAAACAAGCCTCTATTTCAGCTAAAGTGTCCATTAATGCCCCATAAGTATTTCCCATAGTATGTATAGCGGCTCTTTGTGGACAGAAATGAAACTTATCTGTCTAGTGAAAGTAAAGTGTGTAATATCGACTGAGTAGCTTTCTATAAGTCACCTGCAGCTTGTGTCGCTGTTGTTTTGATTGGTTTGTCGTGTGAAACTCAAGTCACACATGGTTTCCCAGCGGCTCGACCCGTCAGACAGATGTTTGAAATCGAAAGAAGACAAACTTTACACTTTACACGTTTGTACTTTACAGCAATGTGATTTGGATCAaaatgaagATGTTTGAAACTGAAAGAAGACCAATTCTCAGTTTGTACTTTACAGCCATGTGATTTGGATCaaaatgaggATCACGGATGAGATAATAAAAATGGTTCAGGGTCCGTGTGATGTCATCGCCCTCTGCCTGAGCCTCATCGGTCTGATTGGTGTCGCCACTGTTACGGCTCTCCCGATGTGGAGAGTCACTGCATTCATAGGAGAAAACATCATCGTGATGGAGACCCGCTGGGAGGGTTTGTGGATGAACTGCTACAGGCAAGCCAACATCCGAATGCAGTGTAAAGTGTACGACTCCCTGCTGTATCTTCCTCCTGATCTGCAGGCGGCCCGCGGATTGACCTGCTGCTCTCTGGCGCTGTGTGGATTCGGGATAATAGTGTCCCTCTTCGGCCTCCGTTGCATGTCTTGTCTGAGTGATCAACCACGCAACAAAAGCATCATTTTAATGATCACTGGCATAATTGAAATCTTAGCAAGTTTTTGCATCGTCATCCCTGTCTCCTGGACGGCCCATACTATTATCAGAGACTTTTACAATCCGTTACTATTGGATGCCCAGCGGAGAGAACTGGGAGAGGCTCTGTATATCGGTTGGGTAACTAGCGCGTTTCTTTTGGCATCTGGAGTCATCTTTCTCTGTCGTCGTGTTGATTCGAACGAGCAGCCATTTTATGCTCGTCCACCACGTAATAAACAAGTTCTGAATCATTTCCAGGCCTTTAACTCTCTCCGTCGTCAGCCGTTGCTCCAGAATAATAGTTTTTCCACTCCTCAGCATTCATCAGCTGCATTCAGCTTTGCTGTCACGCCCTCTAGTGGTCAATATTCACAGCACAACGTGCAGCCGGTGGTCAATGGGTCTTTAGTATACAGTCCAAACATGATTCCACCTCAGAGAGTGAATTATCATGGGCAGAATGTAATGCAAAGTCAGATTTTAGCCAGTAACGCACAGTACCCCGTCAGTGATCCTCGGGATTCCTTTAACACCGGGTCTGCTTTTCATCCTGTGCAACAGAACCCACTCTATGTCGGGTATAATTACTCCCGGGTACAGTCTGGTAGCTCCAACAGTAGCACAGGACTGCGGATATAAGAGTTTCTCTgtgttttatcttttattttaaaataaagagtGCTGAAAATTCCAGTAGTTTTGATTGTAGTATATTAAGTCCTTCAAGTCAGCGGTTCTTGACCTATTAGCTTTGAAAGCCCCTTAagataatgtttataaatgttttatgataatttgaaatcttttttttttttttttagatttgctgCAGACTCTAGGGGTTGTAgtattacaataattaatttaCGTTCATTTAACATAATAATGTAAAAGTTCAATTTAGATATAAGCTTAACTAAAAATATATGatcagtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttttatttatatatatatatatttatttttttttttttttttttttttatttatatatatatatatatataaataaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttttttttttttt
>TCONS_00017423
GCGCGTTTTCATTCCAGGCCTCAAACAAGCCTCTATTTCAGCTAAAGTGTCCATTAATGCCCCATAAGTATTTCCCATAGTATGTATAGCGGCTCTTTGTGGACAGAAATGAAACTTATCTGTCTAGTGAAAGTAAAGTGTGTAATATCGACTGAGTAGCTTTCTATAAGTCACCTGCAGCTTGTGTCGCTGTTGTTTTGATTGGTTTGTCGTGTGAAACTCAAGTCACACATGGTTTCCCAGCGGCTCGACCCGTCAGACAGATGTTTGAAATCGAAAGAAGACAAACTTTACACTTTACACGTTTGTACTTTACAGCAATGTGATTTGGATCAaaatgaagATGTTTGAAACTGAAAGAAGACCAATTCTCAGTTTGTACTTTACAGCCATGTGATTTGGATCaaaatgaggGAACGCCGTTGTGACAGAGAACGTCTTTCTGTCTTGGTACTCAACAATCATGTCTTACACGGCTGGCTCGTACACAGCCAAATCCTACGCGGACAAATCCTACGCAGACAAATCCTACGCGGACAAGTCCTACGCGTACACAGGCTACACAGATGAGAAATCTGCACAGGAGGCCTACGATGAGCAGCTCAAGAAGGAGAAAAGAAAGAGGCGGGATTCGATGTGCTGCGAAGTTGTCGCGCTCATCATCGGGTTTGTCGGATTGATCGGAGTCGCAGCCGTCACCGGTCTCCCCATGTGGAAAGTGACCGCTTTCATCCAGGAGAACATCATCGTGATGGAGACCCGCTGGGAGGGTTTATGGATGAACTGCTACAGGCAAGCCAACATCCGAATGCAATGCAAAGTGTATGATTCTCTGCTGTATCTTCCCCCGGATCTCCAAGCAGCCAGGGGTCTTATGTGCTCCTCTGTTGCTTTGACCGCCATCGGTTGCATTGTGGCCACCGTCGGCATGCGTTGCACCCGTCTGGTCGATTCCCGGCCCAAAGTAAAGCACATCGTTCTGGTGAGCGGAGGCTGTTTGTTTTTGGCTGGATGCTTGACCACTATTATTCCAGTGTCGTGGACTGCTCATGTGATCATACAAGACTTCTACAACCCTTTGCTTATCGATGCACAGCGTAGAGAGCTTGGCGAGGCTTTATATGTCGGATGGGTCACTTCTGCTCTGCTTTTCATCGCCGGTGTGATTCTGCTTTGTCGACATGCACCAAGAACCCAAGCCAAAGAAGACATGGCTACTGTCTTGTATCGTGCCGGATCGGCTCCCTATAACTACTCTTATGCGCCCGGATATGGATACCAGCCTCCTTACGGATACCAGCCTGGGTATACCTATCAGCCGACGTATTCCCCAGTCCCGCCGACAGTCTACAGCCAGCCCAGATACTAAGagacagtaaataaatgaaagaacttGAGAAGAATCTGGGTTGAAGAAAGCAGGACTGTTGATGAAGAATCATTGTCGATTATGTCTGACTGTATATATGAGCTGTATgatgatttaaatgcatttctttatTATAGACTgttcattatttacatttatacatgtGCTAGAATTTAAAAGCCACATGTGGGATATTTCCACACAGCATTTAATGTTGACATAGAGTAGTCGACGTTTGAAGTGGTTCACATCTCAAGACAAGAAATGGATGTTTTTGATGAAATGTTTTGTTCTGCTTCAAATGTTGTTCGCtctttatgtttttgtattgACGTTGTATATTTTAAAGCACTGGTTtgactttaaatgtattaaaaaggaGTGTCAAACG
>TCONS_00017424
ATCATGTCTTACACGGCTGGCTCGTACACAGCCAAATCCTACGCGGACAAATCCTACGCAGACAAATCCTACGCGGACAAGTCCTACGCGTACACAGGCTACACAGATGAGAAATCTGCACAGGAGGCCTACGATGAGCAGCTCAAGAAGGAGAAAAGAAAGAGGCGGGATTCGATGTGCTGCGAAGTTGTCGCGCTCATCATCGGGTTTGTCGGATTGATCGGAGTCGCAGCCGTCACCGGTCTCCCCATGTGGAAAGTGACCGCTTTCATCCAGGAGAACATCATCGTGATGGAGACCCGCTGGGAGGGTTTATGGATGAACTGCTACAGGCAAGCCAACATCCGAATGCAATGCAAAGTGTATGATTCTCTGCTGTATCTTCCCCCGGATCTCCAAGCAGCCAGGGGTCTTATGTGCTCCTCTGTTGCTTTGACCGCCATCGGTTGCATTGTGGCCACCGTCGGCATGCGTTGCACCCGTCTGGTCGATTCCCGGCCCAAAGTAAAGCACATCGTTCTGGTGAGCGGAGGCTGTTTGTTTTTGGCTGGATGCTTGACCACTATTATTCCAGTGTCGTGGACTGCTCATGTGATCATACAAGACTTCTACAACCCTTTGCTTATCGATGCACAGCGTAGAGAGCTTGGCGAGGCTTTATATGTCGGATGGGTCACTTCTGCTCTGCTTTTCATCGCCGGTGTGATTCTGCTTTGTCGACATGCACCAAGAACCCAAGCCAAAGAAGACATGGCTACTGTCTTGTATCGTGCCGGATCGGCTCCCTATAACTACTCTTATGCGCCCGGATATGGATACCAGCCTCCTTACGGATACCAGCCTGGGTATACCTATCAGCCGACGTATTCCCCAGTCCCGCCGACAGTCTACAGCCAGCCCAGATACTAA

Function

symbol description
cldn17 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Located in plasma membrane.

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070821-2 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain; gill; spleen; and testis. Orthologous to human CLDN17 (claudin 17) and CLDN8 (claudin 8).
ZDB-GENE-050417-331 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; epidermis; gill; periderm; and spleen. Orthologous to human CLDN17 (claudin 17).

Ensembl:

ensembl_id ENSDARG00000040628 ENSDARG00000099950

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017422 False 2387 mRNA 0.39 4 42559910 42594436
TCONS_00017423 False 1760 mRNA 0.45 4 42560354 42575208
TCONS_00017424 True 909 mRNA 0.53 1 42573909 42574817

Neighbor

gene id symbol gene type direction distance location
XLOC_008766 tiam1b coding upstream 8754 42397125 ~ 42551156 (+)
XLOC_008764 scaf4b coding upstream 212701 42285643 ~ 42347209 (+)
XLOC_008765 BX322538.1 coding upstream 245155 42314628 ~ 42314755 (+)
XLOC_008763 BX322538.2 coding upstream 279151 42262701 ~ 42280759 (+)
XLOC_008762 SGPP2 coding upstream 304043 42235449 ~ 42255867 (+)
XLOC_008768 NA coding downstream 1188 42595624 ~ 42597390 (+)
XLOC_008769 grik1b coding downstream 5065 42599501 ~ 42679838 (+)
XLOC_008770 slc8a2b coding downstream 173367 42767803 ~ 42981467 (+)
XLOC_008771 NA coding downstream 396964 42991400 ~ 42991648 (+)
XLOC_008772 acsl3a coding downstream 400615 42995051 ~ 43078542 (+)
XLOC_008463 BX663520.1 misc upstream 21307628 21252191 ~ 21252282 (+)
XLOC_008761 NA non-coding upstream 328680 42230088 ~ 42231230 (+)
XLOC_008760 NA non-coding upstream 334189 42219583 ~ 42225721 (+)
XLOC_008759 NA non-coding upstream 357644 42152798 ~ 42202266 (+)
XLOC_008773 NA non-coding downstream 498386 43092822 ~ 43100399 (+)
XLOC_008775 NA non-coding downstream 609419 43203855 ~ 43208245 (+)
XLOC_008779 CABZ01073033.1 non-coding downstream 1234953 43829389 ~ 43829517 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000225_00041381_00042262 NA coding CI01000225 null 40999 ~ 43116 (-)