RNA id: TCONS_00017422


Basic Information

Item Value
RNA id TCONS_00017422
length 2387
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_008767
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42559910 ~ 42594436 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaacgggagattggcatcttggatgtgcagccgacaaatctgcagcaactgcgtgatgctatcatgtcaatatggaccaaaatctctgaggaacatttctaGTATTTGTTGAATCCtgggtttcctctaggtttcacccacaagtccaaaaacatgtgctatatgtgaattgggtaagctaaattgtccttagagtatgtgtgtgagtgagagcttatgggtgtttccctgtgttgggttgcagctggaagggcatccgctgcgtaaaactggataagttcattgcgctgtggcgaacaatgaataataaatggaataagcttaaataaaatgaatgaatgaatgcaaatctTTGAGGcgattttatttgttaaatatgcAGTAATACACCAACTTACTCACTATGGCGCACAGACATTTCGTTTAACTAAACCAACCCTGAGGCGCGTTTTCATTCCAGGCCTCAAACAAGCCTCTATTTCAGCTAAAGTGTCCATTAATGCCCCATAAGTATTTCCCATAGTATGTATAGCGGCTCTTTGTGGACAGAAATGAAACTTATCTGTCTAGTGAAAGTAAAGTGTGTAATATCGACTGAGTAGCTTTCTATAAGTCACCTGCAGCTTGTGTCGCTGTTGTTTTGATTGGTTTGTCGTGTGAAACTCAAGTCACACATGGTTTCCCAGCGGCTCGACCCGTCAGACAGATGTTTGAAATCGAAAGAAGACAAACTTTACACTTTACACGTTTGTACTTTACAGCAATGTGATTTGGATCAaaatgaagATGTTTGAAACTGAAAGAAGACCAATTCTCAGTTTGTACTTTACAGCCATGTGATTTGGATCaaaatgaggATCACGGATGAGATAATAAAAATGGTTCAGGGTCCGTGTGATGTCATCGCCCTCTGCCTGAGCCTCATCGGTCTGATTGGTGTCGCCACTGTTACGGCTCTCCCGATGTGGAGAGTCACTGCATTCATAGGAGAAAACATCATCGTGATGGAGACCCGCTGGGAGGGTTTGTGGATGAACTGCTACAGGCAAGCCAACATCCGAATGCAGTGTAAAGTGTACGACTCCCTGCTGTATCTTCCTCCTGATCTGCAGGCGGCCCGCGGATTGACCTGCTGCTCTCTGGCGCTGTGTGGATTCGGGATAATAGTGTCCCTCTTCGGCCTCCGTTGCATGTCTTGTCTGAGTGATCAACCACGCAACAAAAGCATCATTTTAATGATCACTGGCATAATTGAAATCTTAGCAAGTTTTTGCATCGTCATCCCTGTCTCCTGGACGGCCCATACTATTATCAGAGACTTTTACAATCCGTTACTATTGGATGCCCAGCGGAGAGAACTGGGAGAGGCTCTGTATATCGGTTGGGTAACTAGCGCGTTTCTTTTGGCATCTGGAGTCATCTTTCTCTGTCGTCGTGTTGATTCGAACGAGCAGCCATTTTATGCTCGTCCACCACGTAATAAACAAGTTCTGAATCATTTCCAGGCCTTTAACTCTCTCCGTCGTCAGCCGTTGCTCCAGAATAATAGTTTTTCCACTCCTCAGCATTCATCAGCTGCATTCAGCTTTGCTGTCACGCCCTCTAGTGGTCAATATTCACAGCACAACGTGCAGCCGGTGGTCAATGGGTCTTTAGTATACAGTCCAAACATGATTCCACCTCAGAGAGTGAATTATCATGGGCAGAATGTAATGCAAAGTCAGATTTTAGCCAGTAACGCACAGTACCCCGTCAGTGATCCTCGGGATTCCTTTAACACCGGGTCTGCTTTTCATCCTGTGCAACAGAACCCACTCTATGTCGGGTATAATTACTCCCGGGTACAGTCTGGTAGCTCCAACAGTAGCACAGGACTGCGGATATAAGAGTTTCTCTgtgttttatcttttattttaaaataaagagtGCTGAAAATTCCAGTAGTTTTGATTGTAGTATATTAAGTCCTTCAAGTCAGCGGTTCTTGACCTATTAGCTTTGAAAGCCCCTTAagataatgtttataaatgttttatgataatttgaaatcttttttttttttttttagatttgctgCAGACTCTAGGGGTTGTAgtattacaataattaatttaCGTTCATTTAACATAATAATGTAAAAGTTCAATTTAGATATAAGCTTAACTAAAAATATATGatcagtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttttatttatatatatatatatttatttttttttttttttttttttttatttatatatatatatatatataaataaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttttttttttttt

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070821-2 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain; gill; spleen; and testis. Orthologous to human CLDN17 (claudin 17) and CLDN8 (claudin 8).

Ensembl:

ensembl_id ENSDART00000075785

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017417 lncRNA upstream 242570 42312871 ~ 42317340 (+) True XLOC_008764
TCONS_00017416 lncRNA upstream 272684 42285719 ~ 42287226 (+) False XLOC_008764
TCONS_00017413 lncRNA upstream 279151 42262701 ~ 42280759 (+) True XLOC_008763
TCONS_00019054 lncRNA upstream 328680 42230088 ~ 42231230 (+) True XLOC_008761
TCONS_00019053 lncRNA upstream 334189 42223759 ~ 42225721 (+) True XLOC_008760
TCONS_00019055 lncRNA downstream 1188 42595624 ~ 42597390 (+) True XLOC_008768
TCONS_00018792 lncRNA downstream 396964 42991400 ~ 42991648 (+) True XLOC_008771
TCONS_00018793 lncRNA downstream 498386 43092822 ~ 43093118 (+) False XLOC_008773
TCONS_00019056 lncRNA downstream 609419 43203855 ~ 43208245 (+) False XLOC_008775
TCONS_00019057 lncRNA downstream 609496 43203932 ~ 43208245 (+) True XLOC_008775
TCONS_00017419 mRNA upstream 8754 42397125 ~ 42551156 (+) False XLOC_008766
TCONS_00017421 mRNA upstream 8754 42431198 ~ 42551156 (+) False XLOC_008766
TCONS_00017420 mRNA upstream 8754 42431198 ~ 42551156 (+) True XLOC_008766
TCONS_00017415 mRNA upstream 212701 42285643 ~ 42347209 (+) False XLOC_008764
TCONS_00017412 mRNA upstream 304043 42235449 ~ 42255867 (+) False XLOC_008762
TCONS_00017425 mRNA downstream 5065 42599501 ~ 42679838 (+) False XLOC_008769
TCONS_00017426 mRNA downstream 32521 42626957 ~ 42679838 (+) True XLOC_008769
TCONS_00017427 mRNA downstream 173367 42767803 ~ 42981467 (+) False XLOC_008770
TCONS_00017428 mRNA downstream 338800 42933236 ~ 42981072 (+) True XLOC_008770
TCONS_00017429 mRNA downstream 400615 42995051 ~ 43078542 (+) False XLOC_008772
TCONS_00017414 other upstream 242568 42285643 ~ 42317342 (+) False XLOC_008764
TCONS_00017418 other upstream 245155 42314628 ~ 42314755 (+) True XLOC_008765
TCONS_00017383 other upstream 3239676 39320120 ~ 39320234 (+) True XLOC_008735
TCONS_00017353 other upstream 4962837 37589787 ~ 37597073 (+) True XLOC_008706
TCONS_00017349 other upstream 4979075 37580721 ~ 37580835 (+) True XLOC_008705
TCONS_00017438 other downstream 1234953 43829389 ~ 43829517 (+) True XLOC_008779
TCONS_00017459 other downstream 2266847 44861283 ~ 44861399 (+) True XLOC_008797
TCONS_00017469 other downstream 3019854 45614290 ~ 45614569 (+) True XLOC_008807
TCONS_00017470 other downstream 3022580 45617016 ~ 45617296 (+) True XLOC_008808
TCONS_00017473 other downstream 3049351 45643787 ~ 45649781 (+) False XLOC_008809

Expression Profile

//