XLOC_008809 (sagb)


Basic Information

Item Value
gene id XLOC_008809
gene name sagb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45640906 ~ 45663081 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017471
CTTTAACTGGACACACAGGATCATCTGCGTCtcaacacacaagcacacacagacaGGTGAGTGATACTGCACGACTACGGCTGATCTCAGCACATTTACAGAGACAGAATGAGTCCCAAGCACATCATCTACAAGAAAATCTCCAGAGATAAATCTGTGGGCGTTTACATGGGGAAGCGAGATTTCGTGGACCACTGTGATTTTGTTGATCCTGTTGATGGCGTTGTGCTGATCGACCCAGAGCAGGTGAAAGATAAGAAAGTGTTCGTGATGCTCTCCTGCACCTTCCGCTACGGTCGCGAGGACATGGATGTGATGGGGATGGCGTTTCGCAGGGATATTTTCCTGTGCACGCGGCAGGTTTATCCTCCTCTGCAGGATAAAGAGCGCAGCATTCACACTAAAGTGCAGGAGAAGATCCTGCGCAAACTGGGAGTCAACGCTCATCCTTTTTTCTTTGAGTTTCCAGATAACCTGCCCTGTTCAGTGACTCTGCAGCCGGCGCCCACCGATGTAGGAAagcaATGTGCTGTGGAGTTTGAAGTGAAGGCCTTCTGTGCAGAAAATCAGGATGAAAAAGCCCAAAAGAGGAGTTCAGTGCGGTTGGCCATCAGAAAGATCCAGTACGCTCCAGATAAAGGCGGCGAGCCTCCAGCCGGAGAAACTACCTGTGAATTCATCATGTCGGATAAACCGCTGCATATGCGTGTCAGTCTGGAAAAAGAGGTGTGTT
>TCONS_00017472
GGATCATCTGCGTCtcaacacacaagcacacacagacaGGAGACAGAATGAGTCCCAAGCACATCATCTACAAGAAAATCTCCAGAGATAAATCTGTGGGCGTTTACATGGGGAAGCGAGATTTCGTGGACCACTGTGATTTTGTTGATCCTGTTGATGGCGTTGTGCTGATCGACCCAGAGCAGGTGAAAGATAAGAAAGTGTTCGTGATGCTCTCCTGCACCTTCCGCTACGGTCGCGAGGACATGGATGTGATGGGGATGGCGTTTCGCAGGGATATTTTCCTGTGCACGCGGCAGGTTTATCCTCCTCTGCAGGATAAAGAGCGCAGCATTCACACTAAAGTGCAGGAGAAGATCCTGCGCAAACTGGGAGTCAACGCTCATCCTTTTTTCTTTGAGTTTCCAGATAACCTGCCCTGTTCAGTGACTCTGCAGCCGGCGCCCACCGATGTAGGAAagcaATGTGCTGTGGAGTTTGAAGTGAAGGCCTTCTGTGCAGAAAATCAGGATGAAAAAGCCCAAAAGAGGAGTTCAGTGCGGTTGGCCATCAGAAAGATCCAGTACGCTCCAGATAAAGGCGGCGAGCCTCCAGCCGGAGAAACTACCTGTGAATTCATCATGTCGGATAAACCGCTGCATATGCGTGTCAGTCTGGAAAAAGAGACGTATTATCATGGAGAGGAGATCAACATCAGTGTGGAGATTGACAACAGCTCCAACAGGAACGTGAAGGATGTGACCGTCTCAGTGGAGCAGGTCACTAATGTGGTGCTTTACTCAAATGACAAGTATGTCAAATCTGTGGCCTATGAGGAAACCAAGGATGCAGTGCCGTCTGGAACCAGTCTGAAGAAGGTTTACACTCTCTGTCCTCTGCTGGACAACAACCGCGAGAGACGGGGGCTCGCTCTGGATGGAAAACTGAAGCATGATGACACCAACCTGGCCTCATCCAGCATCGTGAAGGACGAGGTGTTGAGGGAGATTCTGGGTATGCTGGTGTCCTACAGAGTGGTTGTGAAATGTACCGCTTCCGGGTTGCAGTGGAGGTTCCCTTCAAACTCATGCATCCCAAACCCGGTCCAG
>TCONS_00017473
AGGAGACAGAATGAGTCCCAAGCACATCATCTACAAGAAAATCTCCAGAGATAAATCTGTGGGCGTTTACATGGGGAAGCGAGATTTCGTGGACCACTGTGATTTTGTTGATCCTGTTGATGGCGTTGTGCTGATCGACCCAGAGCAGGTGAAAGATAAGAAAGCCTCTGACCTCCTCCAGTGTTCGTGATGCTCTCCTGCACCTTCCGCTACGGTCGCGAGGACATGGATGTGATGGGGATGGCGTTTCGCAGGGATATTTTCCTGTGCACGCGGCAGGTTTATCCTCCTCTGCAGGATAAAGAGCGCAGCATTCACACTAAAGTGCAGGAGAAGATCCTGCGCAAACTGGGAGTCAACGCTCATCCTTTTTTCTTTGAGTTTCCAGATAACCTGCCCTGTTCAGTGACTCTGCAGCCGGCGCCCACCGATGTAGGAAagcaATGTGCTGTGGAGTTTGAAGTGAAGGCCTTCTGTGCAGAAAATCAGGATGAAAAAGCCCAAAAGAGGAGTTCAGTGCGGTTGGCCATCAGAAAGATCCAGTACGCTCCAGATAAAGGCGGCGAGCCTCCAGCCGGAGAA
>TCONS_00017474
AGGAGACAGAATGAGTCCCAAGCACATCATCTACAAGAAAATCTCCAGAGATAAATCTGTGGGCGTTTACATGGGGAAGCGAGATTTCGTGGACCACTGTGATTTTGTTGATCCTGTTGATGGCGTTGTGCTGATCGACCCAGAGCAGGTGAAAGATAAGAAAGTGTTCGTGATGCTCTCCTGCACCTTCCGCTACGGTCGCGAGGACATGGATGTGATGGGGATGGCGTTTCGCAGGGATATTTTCCTGTGCACGCGGCAGGTTTATCCTCCTCTGCAGGATAAAGAGCGCAGCATTCACACTAAAGTGCAGGAGAAGATCCTGCGCAAACTGGGAGTCAACGCTCATCCTTTTTTCTTTGAGTTTCCAGATAACCTGCCCTGTTCAGTGACTCTGCAGCCGGCGCCCACCGATGTAGGAAagcaATGTGCTGTGGAGTTTGAAGTGAAGGCCTTCTGTGCAGAAAATCAGGatgacaACAGCTTTCTGtgcctaccagtaggcacagaaggcccccactggcccatatctatcagctgataaccaccgATAATGCAGTTTATTGTAGTGCAATTGATCATGGATGCTTAATACTTGCATTTTGatccatataatatatatatatttaaaccaaATCCTTGTTCGAAGTGTGAAATTAGTTGTACAGCTTTTTCTTAGACACTAAAAATATAAATCTAGAGCTCTATACAGTGCATAATAATATGTTTGTAACGAGCTCATGTATTGCATGGTAATTAACTCTGTTGTTATTTGCTTTGAGCTCAAATAAAAGCTGTTTGTGACAGC
>TCONS_00017475
GAGACAGAATGAGTCCCAAGCACATCATCTACAAGAAAATCTCCAGAGATAAATCTGTGGGCGTTTACATGGGGAAGCGAGATTTCGTGGACCACTGTGATTTTGTTGATCCTGTTGATGGCGTTGTGCTGATCGACCCAGAGCAGGTGAAAGATAAGAAAGTGTTCGTGATGCTCTCCTGCACCTTCCGCTACGGTCGCGAGGACATGGATGTGATGGGGATGGCGTTTCGCAGGGATATTTTCCTGTGCACGCGGCAGGTTTATCCTCCTCTGCAGGATAAAGAGCGCAGCATTCACACTAAAGTGCAGGAGAAGATCCTGCGCAAACTGGGAGTCAACGCTCATCCTTTTTTCTTTGAGTTTCCAGATAACCTGCCCTGTTCAGTGACTCTGCAGCCGGCGCCCACCGATGTAGGAAagcaATGTGCTGTGGAGTTTGAAGTGAAGGCCTTCTGTGCAGAAAATCAGGATGAAAAAGCCCAAAAGAGGAGTTCAGTGCGGTTGGCCATCAGAAAGATCCAGTACGCTCCAGATAAAGGCGGCGAGCCTCCAGCCGGAGAAACTACCTGTGAATTCATCATGTCGGATAAACCGCTGCATATGCGTGTCAGTCTGGAAAAAGAGACGTATTATCATGGAGAGGAGATCAACATCAGTGTGGAGATTGACAACAGCTCCAACAGGAACGTGAAGGATGTGACCGTCTCAGTGGAGCAGGTCACTAATGTGGTGCTTTACTCAAATGACAAGTATGTCAAATCTGTGGCCTATGAGGAAACCAAGGATGCAGTGCCGTCTGGAACCAGTCTGAAGAAGGTTTACACTCTCTGTCCTCTGCTGGACAACAACCGCGAGAGACGGGGGCTCGCTCTGGATGGAAAACTGAAGCATGATGACACCAACCTGGCCTCATCCAGCATCGTGAAGGACGAGGTGTTGAGGGAGATTCTGGGTATGCTGGTGTCCTACAGAGTGGTTGTGAAATGTACCGCTTCCGGCATGGTCGGATCCAGTGAGGTTGCAGTGGAGGTTCCCTTCAAACTCATGCATCCCAAACCCGGTCCAGgcagtgaagACACAACTGATCTGGTGTTCGAGGAGTTTAAACGCTCATATCTGAAAGGCGTCATCGGCGATGATGACGATTCTCCGGCGGAGCCCTGA

Function

symbol description
sagb Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; eye; photoreceptor cell; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

GO:

id name namespace
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-98 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; eye; photoreceptor cell; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

Ensembl:

ensembl_id ENSDARG00000038378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017471 False 733 mRNA 0.50 8 45640906 45649851
TCONS_00017472 False 1088 mRNA 0.50 13 45640923 45657407
TCONS_00017473 False 582 nonsense_mediated_decay 0.51 7 45643787 45649781
TCONS_00017474 False 808 mRNA 0.44 7 45643787 45663081
TCONS_00017475 True 1166 mRNA 0.51 14 45643789 45662326

Neighbor

gene id symbol gene type direction distance location
XLOC_008806 atg16l1 coding upstream 3446 45591669 ~ 45637460 (+)
XLOC_008808 CU929115.2 coding upstream 23610 45617016 ~ 45617296 (+)
XLOC_008807 CU929115.1 coding upstream 26337 45614290 ~ 45614569 (+)
XLOC_008805 cldn15lb coding upstream 50561 45563491 ~ 45590345 (+)
XLOC_008804 LO018197.1 coding upstream 82625 45544589 ~ 45558281 (+)
XLOC_008810 NA coding downstream 2323 45665404 ~ 45670549 (+)
XLOC_008811 NA coding downstream 265770 45928851 ~ 45948056 (+)
XLOC_008812 lrfn1 coding downstream 331042 45994123 ~ 46132191 (+)
XLOC_008813 NA coding downstream 385142 46048223 ~ 46049113 (+)
XLOC_008814 NA coding downstream 531216 46194297 ~ 46210116 (+)
XLOC_008463 BX663520.1 misc upstream 24388624 21252191 ~ 21252282 (+)
XLOC_008803 NA non-coding upstream 112445 45525122 ~ 45528461 (+)
XLOC_008802 NA non-coding upstream 170738 45465865 ~ 45470168 (+)
XLOC_008801 NA non-coding upstream 226159 45410623 ~ 45414747 (+)
XLOC_008815 NA non-coding downstream 558347 46221428 ~ 46258441 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000147_00686667_00693767 NA coding CI01000147 null 686667 ~ 694038 (+)