XLOC_008805 (cldn15lb)


Basic Information

Item Value
gene id XLOC_008805
gene name cldn15lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45563491 ~ 45590345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017462
gtgtgaaacaGATGAATGACCCTGAGTGGAGAGACGAGACTCATGTGGAAAGAACGCGCTCAACTCTCCTCTTCTTCTGCTTTGTGGGAGCGTTTTGAGTTTTTGGGGTTGTTGACCTTAAGCCAATATTAACACAGTGACATTCGGCCCACCGCTGCTTCCCCACTCACACTGAAAACCTGCTCACAGCACACACTTTCTGAACAAAACGCTAATTATTCTTCATTTTCAGCACACACTCCAGTCCACTGAGAGACAAACAGGATGGCGGTGATGGTGCTGCAGGTGCTGGGCTTGTTTCTGGGGATCGTGGGCTGGTGTTTGGAGTCCAGCTCTATAAACTCGTCTGTGTGGAAGAGCAGCAGTCATGGGGAAGCGGTGGTGACGGCCAGCTCGCAGTTCGAAGGCCTCTGGTTCTCCTGCGCCTCAAACTCACTGGGAGCCATTCACTGCCAGAGGTTCAAGACCACTCTGGGTCTGCCAGGATATATCCAGGCTTGTCGGGCTCTGATGATCATCGCTCTGATTCTGGGTCTGCTGTCTGTGGTTCTGGCCTCGATGGGACTCAAGTGCACTAAACTGGGCAGCACGTCTGAGGAGGCCAAGGGCAAAATCAGCCTGACTGCAGGAATCATGTTCATCCTGTCAGGTTTGTGTGTTATCGTGGCCGTGTCGTGGTACGCTGCTCGAGTCGTCCAGGAATTTAATGACCCGTTTTATGGAGGCACAAAGTATGAACTGGGCGCGGGTCTGTATCTGGGATGGGCGGCAGCTGCTCTGTGTATATTAGGAGGAGGAACTCTCTGCACTTCCTTTAAAGGTTCATCTCCTGCACAAACACGGGGCCCGGGCTACAACTACAGCGCTGCACAGCCTCAGAAGATTTACAGATCTGCTCCATCAGACAACAGCATCACCAAAGCATATGTTTAAGACTGACTTTATTTTGAGCTGTCTTTCATTTTTTTGTACATGGACCCCATTTAATTGCATCTTAAAAGTCAACACACTtaacctttgaaaaaaaaaatactgtggtaTTACTCTTATAGTAATGCGTACATGTGCTAAAATttgctttatttgtatttttttctgtcaaaGCTGCATTTAGGCTTAACTTTTAATAAGAAAATGGTTGAATTCGTTATATTATTTTGGTTTTTTGATTTACTACAGCACTATAATACATTTCCTGTATTTGTATATCATTATTATATGTTCTTTTCAATATTAATTTcctaactgttttaaataataacacgCTTTGGCCACTCATGTGTCATAAAAGTATGACTTTTTTTAGCTCtgttcttattttttttgtttcatttttaaatctactagaatttgatcaaaaatacataaaaatgctaataattaaaaatattaatacagtTCTCACTGCGTTAATCTTGAATCAAttttatgtaacttcctcattgTCAGCGAAATATAATTCAGCTTTGTCTCAGATATGAAATGCTTATTTCATCATCAGTTCCCTTCTGTATGTTTGTTTCTCATTAAATCTCAACTTCCGCATTCCTATCATGTATATTGTCATGTTATATGGATCATGTTTAGTGCGTTATATAAATGTTACATTGTCTGTTCTGCTCTTTTTTTCCTTACTTTATGTTTTAGCCatttctgtaaataataaaaaaatctgtgcaAAATTGTGCAGAGTTTGTGTTGCTTAAAAGCTGAACCTCAGATGTGTCTACAGCAGTTTAatatgtgtgaatgtaagagtggaagggcatccgctgtgtaaaaacgtgctggataagttggtggttcattccgctgtggcgaccccagattaataaagggactaagccgaaaagaaaatgaataaatgaatgttaatgagctcagtcctgatcaaaactattaaactgtttagaa
>TCONS_00017463
AACACAGtgacacactcagacacactcttGATCACTGCGAGcggttggtgtgtgtgtgtgtgcttttgggATCATGTCGACTGGTGTTCAGCTGCTGGGATTTTTGATGTGTTTGGGCGGCTGGCTGCTGTCCTTCATATCGCTGTTGAATGATTCGTGGCGAGTGTCCTCGTTTAGTGATCAGTTGATCACGTCTCAGTGGTATTACCAGAATCTGTGGCAGACGTGTGCAAAGGCCAGCACCGGCGTCACCAACTGCAAGGAGTTCGAGTCCATGCTCTCTCTGGcagGATATATCCAGGCTTGTCGGGCTCTGATGATCATCGCTCTGATTCTGGGTCTGCTGTCTGTGGTTCTGGCCTCGATGGGACTCAAGTGCACTAAACTGGGCAGCACGTCTGAGGAGGCCAAGGGCAAAATCAGCCTGACTGCAGGAATCATGTTCATCCTGTCAGGTTTGTGTGTTATCGTGGCCGTGTCGTGGTACGCTGCTCGAGTCGTCCAGGAATTTAATGACCCGTTTTATGGAGGCACAAAGTATGAACTGGGCGCGGGTCTGTATCTGGGATGGGCGGCAGCTGCTCTGTGTATATTAGGAGGAGGAACTCTCTGCACTTCCTTTAAAGGTTCATCTCCTGCACAAACACGGGGCCCGGGCTACAACTACAGCGCTGCACAGCCTCAGAAGATTTACAGATCTGCTCCATCAGACAACAGCATCACCAAAGCATATGTTTAAGACTGACTTTATTTTGAGCTGTCTTTCATTTTTTTGTACATGGACCCCATTTAATTGCATCTTAAAAGTCAACACACTtaacctttgaaaaaaaaaatactgtggtaTTACTCTTATAGTAATGCGTACATGTGCTAAAATttgctttatttgtatttttttctgtcaaaGCTGCATTTAGGCTTAACTTTTAATAAGAAAATGGTTGAATTCGTTATATTATTTTGGTTTTTTGATTTACTACAGCACTATAATACATTTCCTGTATTTGTATATCATTATTATATGTTCTTTTCAATATTAATTTcctaactgttttaaataataacacgCTTTGGCCACTCATGTGTCATAAAAGTATGACTTTTTTTAGCTCtgttcttattttttttgtttcatttttaaatctactagaatttgatcaaaaatacataaaaatgctaataattaaaaatattaatacagtTCTCACTGCGTTAATCTTGAATCAAttttatgtaacttcctcattgTCAGCGAAATATAATTCAGCTTTGTCTCAGATATGAAATGCTTATTTCATCATCAGTTCCCTTCTGTATGTTTGTTTCTCATTAAATCTCAACTTCCGCATTCCTATCATGTATATTGTCATGTTATATGGATCATGTTTAGTGCGTTATATAAATGTTACATTGTCTGTTCTGCTCTTTTTTTCCTTACTTTATGTTTTAGCCatttctgtaaataataaaaaaatctgtgcaAAATTGTGCAGAGTTTGTGTTGCTTAAAAGCTGAACCTCAGATGTGTCTACAGCAGTTTAatatgtgtgaatgtaagagtggaagggcatccgctgtgtaaaaacgtgctggataagttggtggttcattccgctgtggcgaccccagattaataaagggactaagccgaaaagaaaatgaataaatgaatgttaatgagctcagtcctgatcaaaactattaaactgtttagaa
>TCONS_00017464
GTATGAACTGGGCGCGGGTCTGTATCTGGGATGGGCGGCAGCTGCTCTGTGTATATTAGGAGGAGGAACTCTCTGCACTTCCTTTAAAGGTTCATCTCCTGCACAAACACGGGGCCCGGGCTACAACTACAGCGCTGCACAGCCTCAGAAGATTTACAGATCTGCTCCATCAGACAACAGCATCACCAAAGCATATGTTTAAGACTGACTTTATTTTGAGCTGTCTTTCATTTTTTTGTACATGGACCCCATTTAATTGCATCTTAAAAGTCAACACACTtaacctttgaaaaaaaaaatactgtggtaTTACTCTTATAGTAATGCGTACATGTGCTAAAATttgctttatttgtatttttttctgtcaaaGCTGCATTTAGGCTTAACTTTTAATAAGAAAATGGTTGAATTCGTTATATTATTTTGGTTTTTTGATTTACTACAGCACTATAATACATTTCCTGTATTTGTATATCATTATTATATGTTCTTTTCAATATTAATTTcctaactgttttaaataataacacgCTTTGGCCACTCATGTGTCATAAAAGTATGACTTTTTTTAGCTCtgttcttattttttttgtttcatttttaaatctactagaatttgatcaaaaatacataaaaatgctaataattaaaaatattaatacagtTCTCACTGCGTTAATCTTGAATCAAttttatgtaacttcctcattgTCAGCGAAATATAATTCAGCTTTGTCTCAGATATGAAATGCTTATTTCATCATCAGTTCCCTTCTGTATGTTTGTTTCTCATTAAATCTCAACTTCCGCATTCCTATCATGTATATTGTCATGTTATATGGATCATGTTTAGTGCGTTATATAAATGTTACATTGTCTGTTCTGCTCTTTTTTTCCTTACTTTATGTTTTAGCCatttctgtaaataataaaaaaatctgtgcaAAA

Function

symbol description
cldn15lb Predicted to enable structural molecule activity. Acts upstream of or within intrahepatic bile duct development. Located in bicellular tight junction. Is expressed in gut; head; liver; pancreas; and pectoral fin.

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-145 Predicted to enable structural molecule activity. Acts upstream of or within intrahepatic bile duct development. Located in bicellular tight junction. Is expressed in gut; head; liver; pancreas; and pectoral fin.

Ensembl:

ensembl_id ENSDARG00000100844

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017462 False 1914 mRNA 0.41 6 45563491 45590345
TCONS_00017463 False 1720 mRNA 0.39 5 45575180 45590345
TCONS_00017464 True 951 mRNA 0.32 2 45586471 45590113

Neighbor

gene id symbol gene type direction distance location
XLOC_008804 LO018197.1 coding upstream 5210 45544589 ~ 45558281 (+)
XLOC_008803 NA coding upstream 35030 45525122 ~ 45528461 (+)
XLOC_008802 NA coding upstream 93323 45465865 ~ 45470168 (+)
XLOC_008801 NA coding upstream 148744 45410623 ~ 45414747 (+)
XLOC_008800 NA coding upstream 318122 45224937 ~ 45245369 (+)
XLOC_008806 atg16l1 coding downstream 1324 45591669 ~ 45637460 (+)
XLOC_008807 CU929115.1 coding downstream 23945 45614290 ~ 45614569 (+)
XLOC_008808 CU929115.2 coding downstream 26671 45617016 ~ 45617296 (+)
XLOC_008809 sagb coding downstream 50561 45640906 ~ 45663081 (+)
XLOC_008810 NA coding downstream 75059 45665404 ~ 45670549 (+)
XLOC_008463 BX663520.1 misc upstream 24311209 21252191 ~ 21252282 (+)
XLOC_008799 NA non-coding upstream 551315 45008414 ~ 45012176 (+)
XLOC_008811 NA non-coding downstream 338506 45928851 ~ 45948056 (+)
XLOC_008813 NA non-coding downstream 457878 46048223 ~ 46049113 (+)

Expression


Co-expression Network