XLOC_008806 (atg16l1)


Basic Information

Item Value
gene id XLOC_008806
gene name atg16l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45591669 ~ 45637460 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017465
TAGAGCCAAAATGGCGTCCGTGATCCTTCAGTCTGGTGTGGGCTAGCATGAAACCTACCCGATTTACCCTGAAATGACACATTTCTGCTGTTATTAGTCGGATTACTCAATTCTATCATCAAAAAGAATCGGCGTTATCCTCAAGAGGACGCGTTTTGATGCTGTGAGgAGGAGATGGCGGGACGCAGAGTGGAGTGTTTGTGGAAGCGTCACGTTGTGGAGCAGCTGAAGCAGAGAGACAGAGTACAGCGTCAGGCCTTTGAGGAGATCATACACCAatATAACCGGCTGTTGGAGAAGTCTGATCTTCAggttgttttttctgaacgtcTCCAAACTGAGAAATATGAGCAACAGAACAGACACGACCTCAGTCCGTGTGTGGACGGCGGGCGCAGTGATTCTCTGCAGCAGGAAATGTCTCAGATGCGGATCAGACATCAGGAAGAGCTGACGGAGCTCCACAAGAAAAGAGGAGAGcTGGCCCAGAGTGTGATTGAATTAAACAACCAGATCCAGCAGAAAGACAAAGAGATCCAGAGTAACGAAGTCAAGATGCAGGAGTATCTGCAGCAGATCTCGCAGCTGGAAGGAGAGTGTCGTGAGCTCAGGAACTGTCTGGCGGATTTGGAACGAGCCAATCAGACGCTGCGAGACGAGTACGACGCCCTGCAGATCACGTTCAGCGCTCTGGAGGAGAAACTGCGCAAAACCACCGAGGACAATCAGGAGCTGGTGACGCGCTGGATGGCGGAGAAAGCCCAGGAGGCCAACAGACTCAATGCTGAGAACGAGAAGGACTCCAGACGCAGGCAGGCAAAGCTGCAGAAGGAACTGGCAGATGCAGCAAAGGAGCCGCTTCCTATCGACCCAGATGATGACATCGAGGTTCTCACAGAGGATGCTGGGAAGGCAACGGGTGAAACGTCACCGAGCAGACAGCTCAGTCGCACACCCAGtaaaCGGTTGTCTCAGCCCCCTCCTCCCGCAGGACTGCTGGACTCCATCTCTAATATGTTTGGAAGACGTCGCTCCGTGAATTCGTTCAGCTCGTCTCCTGAAAACGCAGAAGTGCCGTCGGCGTGTGCGGATGTGCGTGTTCCCTCCACTGCACTCCACATCTTTgacgCTCATGATGGAGAAGTGAACGCTGTGAGGTTTAGTCCTGGTTCTCGTCTGCTCGCCACAGGAGGAATGGACCGCCGGGTCAAACTCTGGGAAGTCGTATCTGGGCGATGTGAACCTAAAGGTGCACTGACGGGAAGTAATGCTGGAATCACCAGTATAGAGTTTGACAGTGCGGGCTCGTATCTTCTGGCTGCTTCCAATGATTTCGCAAGCCGAATTTGGACTGTCGATGACTACAGACTGAGGCACACGCTCACAGGACACAGCGGGAAGGTTTTATCTGCTCGCTTTCTCCTGGATAACGCAAGGATCGTTTCCGGCAGCTACGACCGAACGCTCAAACTCTGGGACCTGCGCAGCAAAGTCTGCATGAAGACGGTGTTTGCTGGTTCCAGCTGTAATGATATCGTCTGCACGGAGCAGTGTGTGATGAGCGGACACTTCGATAAGAAAGTTCGCTTCTGGGACATCAGggcaGAGAGTATCGTGCGTGAGCTGGAGCTGATGGGCCGTGTGACGTCTCTGGATCTGAATCACGACCGCACTGAACTCCTCACCTGCTCTCGGGATGACCTGGTGAAAATCATCGACCTGCGCACTAATGCTGTCCGACAAACCTTTAATGCTCAAGGCTTCAAGTGCGGTTCTGACTTCACCAGGGTCACGTTTAGtcCTGACGGGAGTTTTGTGGCGGCCGGTTCTGCAGACGGCGTTCTGTACCTCTGGAACGTTCTGACAGGGAAACTAGAGAAAACCCTCGATAAGGGTCACAGTTCTGCTATCAACTCGGTGTCCTGGTCTCTGTCGGGAGCGTTTGTGGCCAGTGTGGAGAAAGGCAGCAAGGCCGTGCTTTGGTCCGACATGTGATCCTCCGCCGTGATTGGCTAAACATGGCACCGCCCTGCCGTGATTGGATGAAACAGACTGTAAAGACGGAACGAAAGTGAGCCCACCCTCACGCCCCACAGGCCTCTAAAACTACCTTTCCCACAATGCCATCTGTCTGGCTCTCTACACATACTATACTATACATATTTATAGCAGCTTTCATGCACAGTCtcgtgtctcacacacacacacacacacacacacacatgcattcagtGCGAGATTACACAAAAGACTCTCGTTGATCTTTGACTCTTACTGCTTATTTTAACACAGCTttaaatcagtgtgtgtgtgtttactgttgTAGTTCATGCTTTGCCTTATACAGATACAGGCcattaaggtgtgtgtgtgtgtgtacgtttgtgtgcgtgcgtttgCGAGTGCGTGCGTGCATGAGTGCATTTGCGTTGGTATGTGCGTGCGTTTGCGAACGTCGTTGCGTTTGTGTGCGTGCATTTGTGTATGCGCGCACGTTTGCATGCGTGCATCTGAGTGCGTGTGTTTGCGTACGTTTATGCGTGTGTGCATTTGCGCGTGTGTATGTGCGTTTGCGTGCGTGAGTGCGTTTGCGtacgtgcgtgtttgtgtgctcGTGTTTGCATGCAGACacgagcacacaaacacatgcatgtgCGTTTgcgtatgtatgtgcgtgtgtttacGTACATGTGTGCGTTTGCTTACGTGCGTTTACGTACATATGTGCATTTGTTTCCATacatgcgtgtttgtgtgtgcgttcgTGTACGtgcatgtgtttgagtgtgtgcattTACGTACGTGTGTGCGTGCTTTTGCgcatgtgtttgtgcgtgcgtttGCATACGTATGTGCGTGTGTTTACGTACATGTGTGCGTTTGCTTACGTGCGTTTACGTACATATGTGCATTTGTTTCCATacatgcgtgtttgtgtgtgcgttcgTGTACGTGCATGTGTTTGAGTGCGTGCATTTGCGTACGTGCGTGTGTGCGTTTGCGtacgtgcgtgtgtttgtgtgcgtgcgtgtgtttgtgtgcgtgcgtgcgtttgtgtACGTGTGTGCGTTTGCATACGTGCGCGTGTTTGCGTACGTTCGTTTATGTGCATCtctgtgtgcgtttgtgtgcgcgtgcatttgcttgtgtgcatgcatttgtgtgctcgtgtgtctgtgtgtgtgcgtgtgtgtatgttcaTTAAAGTAATTCCAGCATTGTTAACACAAAATAATGTCAGGTTGCTGAAAATCGTCCTGTTAAGGGTTAAAAAGTATCCCAATTGTCTATAGCAACTTACATTTGCTCGGAAAGGATCTTAAAAATCAaaggaaagaaaaacattttGCTGAAAGAGAATagtttttataattgtttgtgtttttttatgcacatttaacCCCTTGTTTGTCATTTTTCATTATGCATTGCATTAAAAATGGTCATTGATGtaaattaaacatgaattttCATACTGTAAGACAGTATTTATCATCATGcccacatttttattaatatctgcataaattgaatattaataacaaatgactttgaacaataaataagcgatgatttatattatatatattttaattactcCAAAGTCATTTAAATTCACTGTAAttagattttgtgtgtgtgtgtgtggaattagcatgttgtgggaaaataatttgaataaataatgcatatttagaatattaattaaaattttaattggatatataaattaatgcaacttgcaattatttaaatgttgCTATGTTGGGGCGATGACCATTTCTGAGATTTCCCACAGATTTTTTTAGCGTGTTCATGCTCTGACCATTTTCTGTGCATTAGAGATTGAGTATTCAGCTCCTGTAGTTTACATTAATCAGCTTACTCTGACGTTTACAGTTCAGTACTCCAGTGTAAGAACCAtatttaaactgaaaataaaaacaaggcTGTGTCACTTTATTTTGTCCAATCACAGCAGTTGTTATCCCTAAGCCCCTCCTATCAGCTTCTGGATGAGCATGTGTGCGTGGTGAaatggtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaaacgtctttatttttatttcattatattttaatttcatgcgaTGCACACAAGCTCATATCCTGGCAGCGTTTTCTGCGAGCACAACAGTGTCTTGTTTCTAATACTGTACCCAACTCTGCTCAGCCACTCTTGTCTTGCAAAGGAAAACAAATGCACTTGTTATTTACACAGCAGATCTGGTGACATATGCACTTAAATCAGACTGTACACTCCATCTAACACTATAACTGATGAATCGTTTGAAGACACTCACATCCCCTCATAATCAACACTAGAGCGTGTCGAGGAAACGAGTGCACTTGTTTCAGATGAGTGAGTGGTTTGAATAGAGGGGACGGCACACTTTATTGATGACTAGTGGGTGTGGCTTGTATCTGGCCCCTCCTCTCTCTTGGATCTGTGGGCGGGGCTTACAGTGGGCACTGTATTGTATCTGCTAAACGGACTGTGGAAGGTAAATTTTGCTGTATACGAGTTGTCTGTATATGTCTGCTTACTGTTTGCACATCATAAAATGTCAGACGTT
>TCONS_00017466
ATGGCGGGACGCAGAGTGGAGTGTTTGTGGAAGCGTCACGTTGTGGAGCAGCTGAAGCAGAGAGACAGAGTACAGCGTCAGGCCTTTGAGGAGATCATACACCAatATAACCGGCTGTTGGAGAAGTCTGATCTTCAggttgttttttctgaacgtcTCCAAACTGAGAAATATGAGCAACAGAACAGACACGACCTCAGTCCGTGTGTGGACGGCGGGCGCAGTGATTCTCTGCAGCAGGAAATGTCTCAGATGCGGATCAGACATCAGGAAGAGCTGACGGAGCTCCACAAGAAAAGAGGAGAGcTGGCCCAGAGTGTGATTGAATTAAACAACCAGATCCAGCAGAAAGACAAAGAGATCCAGAGTAACGAAGTCAAGATGCAGGAGTATCTGCAGCAGATCTCGCAGCTGGAAGGAGAGTGTCGTGAGCTCAGGAACTGTCTGGCGGATTTGGAACGAGCCAATCAGACGCTGCGAGACGAGTACGACGCCCTGCAGATCACGTTCAGCGCTCTGGAGGAGAAACTGCGCAAAACCACCGAGGACAATCAGGAGCTGGTGACGCGCTGGATGGCGGAGAAAGCCCAGGAGGCCAACAGACTCAATGCTGAGAACGAGAAGGACTCCAGACGCAGGCAGGCAAAGCTGCAGAAGGAACTGGCAGATGCAGCAAAGGAGCCGCTTCCTATCGACCCG
>TCONS_00017467
ATGGCGGGACGCAGAGTGGAGTGTTTGTGGAAGCGTCACGTTGTGGAGCAGCTGAAGCAGAGAGACAGAGTACAGCGTCAGGCCTTTGAGGAGATCATACACCAatATAACCGGCTGTTGGAGAAGTCTGATCTTCAggttgttttttctgaacgtcTCCAAACTGAGAAATATGAGCAACAGAACAGACACGACCTCAGTCCGTGTGTGGACGGCGGGCGCAGTGATTCTCTGCAGCAGGAAATGTCTCAGATGCGGATCAGACATCAGGAAGAGCTGACGGAGCTCCACAAGAAAAGAGGAGAGcTGGCCCAGAGTGTGATTGAATTAAACAACCAGATCCAGCAGAAAGACAAAGAGATCCAGAGTAACGAAGTCAAGATGCAGGAGTATCTGCAGCAGATCTCGCAGCTGGAAGGAGAGTGTCGTGAGCTCAGGAACTGTCTGGCGGATTTGGAACGAGCCAATCAGACGCTGCGAGACGAGTACGACGCCCTGCAGATCACGTTCAGCGCTCTGGAGGAGAAACTGCGCAAAACCACCGAGGACAATCAGGAGCTGGTGACGCGCTGGATGGCGGAGAAAGCCCAGGAGGCCAACAGACTCAATGCTGAGAACGAGAAGGACTCCAGACGCAGGCAGGCAAAGCTGCAGAAGGAACTGGCAGATGCAGCAAAGGAGCCGCTTCCTATCGACCCAGATGATGACATCGAGGTTCTCACAGAGGATGCTGGGAAGGCAACGGGTGAAACGTCACCGAGCAGACAGCTCAGTCGCACACCCAGtaaaCGGTTGTCTCAGCCCCCTCCTCCCGCAGGACTGCTGGACTCCATCTCTAATATGTTTGGAAGACGTCGCTCCGTGAATTCGTTCAGCTCGTCTCCTGAAAACGCAGAAGTGCCGTCGGCGTGTGCGGATGTGCGTGTTCCCTCCACTGCACTCCACATCTTTgacgCTCATGATGGAGAAGTGAACGCTattatttgctta
>TCONS_00017468
ATGGCGGGACGCAGAGTGGAGTGTTTGTGGAAGCGTCACGTTGTGGAGCAGCTGAAGCAGAGAGACAGAGTACAGCGTCAGGCCTTTGAGGAGATCATACACCAatATAACCGGCTGTTGGAGAAGTCTGATCTTCAggttgttttttctgaacgtcTCCAAACTGAGAAATATGAGCAACAGAACAGACACGACCTCAGTCCGTGTGTGGACGGCGGGCGCAGTGATTCTCTGCAGCAGGAAATGTCTCAGATGCGGATCAGACATCAGGAAGAGCTGACGGAGCTCCACAAGAAAAGAGGAGAGcTGGCCCAGAGTGTGATTGAATTAAACAACCAGATCCAGCAGAAAGACAAAGAGATCCAGAGTAACGAAGTCAAGATGCAGGAGTATCTGCAGCAGATCTCGCAGCTGGAAGGAGAGTGTCGTGAGCTCAGGAACTGTCTGGCGGATTTGGAACGAGCCAATCAGACGCTGCGAGACGAGTACGACGCCCTGCAGATCACGTTCAGCGCTCTGGAGGAGAAACTGCGCAAAACCACCGAGGACAATCAGGAGCTGGTGACGCGCTGGATGGCGGAGAAAGCCCAGGAGGCCAACAGACTCAATGCTGAGAACGAGAAGGACTCCAGACGCAGGCAGGCAAAGCTGCAGAAGGAACTGGCAGATGCAGCAAAGGAGCCGCTTCCTATCGACCCAGATGATGACATCGAGGTTCTCACAGAGGATGCTGGGAAGGCAACGGGTGAAACGTCACCGAGCAGACAGCTCAGTCGCACACCCAGtaaaCGGTTGTCTCAGCCCCCTCCTCCCGCAGGACTGCTGGACTCCATCTCTAATATGTTTGGCTTGTCTGATTCTGTCCAACCTGGTTTCATCCCATCTGACTCCAGAAGACGTCGCTCCGTGAATTCGTTCAGCTCGTCTCCTGAAAACGCAGAAGTGCCGTCGGCGTGTGCGGATGTGCGTGTTCCCTCCACTGCACTCCACATCTTTgacgCTCATGATGGAGAAGTGAACGCTGTGAGGTTTAGTCCTGGTTCTCGTCTGCTCGCCACAGGAGGAATGGACCGCCGGGTCAAACTCTGGGAAGTCGTATCTGGGCGATGTGAACCTAAAGGTGCACTGACGGGAAGTAATGCTGGAATCACCAGTATAGAGTTTGACAGTGCGGGCTCGTATCTTCTGGCTGCTTCCAATGATTTCGCAAGCCGAATTTGGACTGTCGATGACTACAGACTGAGGCACACGCTCACAGGACACAGCGGGAAGGTTTTATCTGCTCGCTTTCTCCTGGATAACGCAAGGATCGTTTCCGGCAGCTACGACCGAACGCTCAAACTCTGGGACCTGCGCAGCAAAGTCTGCATGAAGACGGTGTTTGCTGGTTCCAGCTGTAATGATATCGTCTGCACGGAGCAGTGTGTGATGAGCGGACACTTCGATAAGAAAGTTCGCTTCTGGGACATCAGggcaGAGAGTATCGTGCGTGAGCTGGAGCTGATGGGCCGTGTGACGTCTCTGGATCTGAATCACGACCGCACTGAACTCCTCACCTGCTCTCGGGATGACCTGGTGAAAATCATCGACCTGCGCACTAATGCTGTCCGACAAACCTTTAATGCTCAAGGCTTCAAGTGCGGTTCTGACTTCACCAGGGTCACGTTTAGtcCTGACGGGAGTTTTGTGGCGGCCGGTTCTGCAGACGGCGTTCTGTACCTCTGGAACGTTCTGACAGGGAAACTAGAGAAAACCCTCGATAAGGGTCACAGTTCTGCTATCAACTCGGTGTCCTGGTCTCTGTCGGGAGCGTTTGTGGCCAGTGTGGAGAAAGGCAGCAAGGCCGTGCTTTGGTCCGACATGTGA

Function

symbol description
atg16l1 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1).

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0039689 negative stranded viral RNA replication biological_process
GO:0000421 autophagosome membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04621 NOD-like receptor signaling pathway
ko05131 Shigellosis
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050417-401 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1).

Ensembl:

ensembl_id ENSDARG00000099430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017465 False 4727 mRNA 0.47 19 45591669 45637460
TCONS_00017466 False 699 mRNA 0.54 6 45595385 45605560
TCONS_00017467 False 990 mRNA 0.54 11 45595385 45619118
TCONS_00017468 True 1866 mRNA 0.54 19 45595385 45634728

Neighbor

gene id symbol gene type direction distance location
XLOC_008805 cldn15lb coding upstream 1324 45563491 ~ 45590345 (+)
XLOC_008804 LO018197.1 coding upstream 33388 45544589 ~ 45558281 (+)
XLOC_008803 NA coding upstream 63208 45525122 ~ 45528461 (+)
XLOC_008802 NA coding upstream 121501 45465865 ~ 45470168 (+)
XLOC_008801 NA coding upstream 176922 45410623 ~ 45414747 (+)
XLOC_008809 sagb coding downstream 3446 45640906 ~ 45663081 (+)
XLOC_008810 NA coding downstream 27944 45665404 ~ 45670549 (+)
XLOC_008811 NA coding downstream 291391 45928851 ~ 45948056 (+)
XLOC_008812 lrfn1 coding downstream 356663 45994123 ~ 46132191 (+)
XLOC_008813 NA coding downstream 410763 46048223 ~ 46049113 (+)
XLOC_008463 BX663520.1 misc upstream 24339387 21252191 ~ 21252282 (+)
XLOC_008800 NA non-coding upstream 346300 45224937 ~ 45245369 (+)
XLOC_008799 NA non-coding upstream 579493 45008414 ~ 45012176 (+)
XLOC_008814 NA non-coding downstream 556837 46194297 ~ 46210116 (+)
XLOC_008815 NA non-coding downstream 583968 46221428 ~ 46258441 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000147_00660242_00675284 ATG16L1 coding CI01000147 null 657559 ~ 675807 (+)