CI01000242_00546022_00570147 (SLC8A2A, SLC8A2B, SLC8A2)


Basic Information

Item Value
gene id CI01000242_00546022_00570147
gene name SLC8A2A, SLC8A2B, SLC8A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 545037 ~ 570383 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000242_00546022_00570147.mRNA
AGCCTGGAGATATTTATGTTGGATTGCGAGTGCTGTTCTTCTAAAGCTGCGTGAGATTTGTTTTTCTGATGATGACATTTACAGATGCATTTTCGGTTGCTTTTCTTGCCATTAAAGTTCTTTTCTTTACTCTTTTTTCCCCAGGTCCCCTGGTGGGCTGGTTCCTCTCCGTGTTGAATCACCTCCTTTATTTCTTCTCCTCCTCTGAACTCCGGAAGCCCTTGAGGAGTGAGACCATGGCATCTCTTTCCTCTCGACGCTCTTCTATCCTCTTTCTGTGTCTCGCCCTCGTCCTTTCTTTGCCCCCATCCTGTTCTCCTGAATCCCAGCGTGAAGAGCCGTCTCTCCAGCCCTCCGTCGCTCCAGAGGTTCCCTCAGAGCTCTACAGTAACCTGACCAACGACAGCGACGGCGCCGCTCTGAACAAACCGTGCAGCGAACCTGTGGAGTGCAGGCCTGGAATCGTCCTGCCCGTATGGAAGCCTATCAATCCCAGTCTCGGAGAGCAGATCGTCCGGGCCGTCGTGTATTTCGTCTCGCTCATGTACATGTTTCTGGGAGTGTCCATCATCGCTGACAGATTCATGGCATCCATCGAGGTCATCACGTCACAGGAAAAAGAAGTGACCATCACCATGCCCAGCGGAGAAACGTCAGTGGCCACTGTGAGAATCTGGAACGAGACTGTGTCCAATTTGACCCTGATGGCACTTGGTTCATCCGCCCCTGAAATTCTCCTGTCGGTTATTGAGATATGGGAAGCTCTGGTCACTCTCTGCTATTTCCCTGTGTGTGTGATTCTGGCGTGGATCGCTGACCGACGCCTCCTTTTCTACAAGTACATGTCCAAACGGTACCGTGCTGACAAAAGAACAGGTGTTGTTGTGGAGACCGAGGGGGAAATGACCCCCAAAGGTATGGAGATGATGATGGATGGCAAGTTTCCACTGAGGGGCGGAGCCATAGGGATCAGCACACAGGAACATTACCAGGATGGAACCAGCAACACAACAGGCACCATGGCAACTTTACCCAACTCCAACAGCACGACCGTTTACATGGAAAGTGTCAAGGACCTGGACGAGAGCCGTAAAGAAGTGATTCGTATCCTGAAGGACCTGAAGCAGAAATATCCAGATAAGGAGCTGGATCAGCTGGTAGACTTGGCCAATTACTACGCTCTCCTTCATCAGCAGAAAAGTCGCGCCTTTTATCGTGTCCAGGCCACACGCATGATGATCGGGGCCGGTAATGTGCTGAAGAAACACGCTGCTGATCACTCTCGTCGTACTGTTGTGGTGGGCGGCAACGAGGCTTCGGAGGACGACGACCTGGCCGTCTGCAGCCGCATTTCCTTCGAGAGTGCGCACAGCCAGTGCATGGAGAACTGCGGCACCGTAATGATACCTGTGGTGTGTCGAGGAGGCCTGGGGGAGAGCACTTTCTACGTAGACTACTGTACGGAAGATGGCACAGCCAACGCTGGATCAGATTATAAGTACTGCGAAGGGACACTGGTGTTCAAACCTGGAGAAACCAGGAAAGACATTAAGATGGTTAATCAGTTGGAATGGTTTCAAGTATCCGATTATTCGGAAGTGATACCATTGATTGGTCATGAAAAGTATTTGCATGAACTTTGCTCTACTATACTTTTCTTCGTGGGCATCATTGACGATGACATCTTTGAGGAAGACGAACATTTCTTTGTGCGTTTGCTGAATCTGCGTGTCGGTGATGCGGAAGGTATGTTTGAGAGTGACGACATGGATCAGGCTCCCAAGGCCCGACTGGTTGAACCGCTGATGGCTACAGTCACCATCCTGGATGACGACCACGCCGGGATCTTCACTTTTACGGACCGCCTGATGCGAGTGAGCGAGAGTGTAGAGGATCCAGAGGGACAGTTGAGCACGGAGGAGGAGGAGGCCAGGAAGATAGCGGAGATGGGCAAACCTGTTCTGGGGGAGCACAGCCGACTGGAGGTCGTGATCGAGGAGTCCTATGAATTTAAGAGTACCGTTGATAAACTGATCAAGAAGACTAACCTGGCGCTGGTCATCGGCACTCATTCTTGGCGAGAGCAGTTCGTGGACGCAGTGACCCGATTCTCAGACTTAATAAAACACATATTGAGGCTCTTACATTCTCAAGCTGCTCCTCTTAAAAGCCCAGTCTCAGAAGCTTCAGCAATACACAATCTGAAAGGAATAGCTCAGCTAAAAATGGTTTGGAATGACATGAGGATATATCTAGGAAGGTTGTTTGTGTCTGGAGACTCATGTGATGGAGACGATGATGAAGATGAGGGTCGAGAGGAGCATCTCCCGTCCTGCTGCGATTATGTCATGCATTTCCTGACAGTGTTCTGGAAGGTTCTGTTTGCGTTTGTTCCGCCCACGGAGTACTGGAACGGCTGGGCCTGCTTTGTGGTATCCATCATTGTAATTGGCCTCCTCACTGCGGTCATTGGAGACCTGGCTTCGCACTTCGGCTGCACCGTAGGCCTCCGTGACACTGTCACCGCTGTGGTGTTTGTGGCTCTGGGCACTTCTATCCCAGACACATTCGCCAGTAAAGTCGCCGCTACTCAAGATCAGTACGCAGACGCCTCCATCGGAAATGTCACCGGCAGCAATGCCGTCAACGTGTTTCTGGGTATCGGCGTGGCCTGGTCCGTAGCGGCCGTATACTGGGCGATCAAAGGCAAGCGGTTTTACGTGGACCCCGGCTCACTGGCCTTCTCCGTCACCCTCTTCACTATTTTTGCCTTCATCTGCATGGGGGTACTACTGTTCCGGCGCCGGCCGTCTATCGGGGGAGAGCTGGGCGGCCCTCGTGTCGCGCGTGTACTCACTACGCTCCTCTTTCTGGGTCTGTGGTTCCTCTATATCCTCTTCTCCAGCCTCGAGGCCTACTGCCACATCGAGGGCTTCTAAACGGCCCCACAGAGAGAGGGCGCTTTTGAGGCTCAGAGCCAATAAGCTACATACATCAACACACAAAATTGCACACACACACTTACAAAACACGTATTTGGTGAATCGTTGAATGCGTTAATACAAGGACCATTCAGCTTAGATGTATCCAAGAACCCTGGTAGAGAATTTGAGATGGAAGAAGTTCAGAGAAAAAGGATGGTGTTTGAGAGAGGGTTGAAAGAAGAGGAGTTTATGGAAAAGAATGCAAAGCATGTAGCAAAAGAGGGGGGAAAAAGAGTGTAAAGTACTAAAACAAAAGAGGGAGCGATGATGTAAAATAGTCACATTTATATCTTTTCGTCTCTCAAGCTCACGCAGAACTGATGACTTTTGTTTAGCACTGCAGACATTGTCACATAACAGGTCTTTTTATGGTTCAAGGGCACAATACATCAGAGCAAAGAGTAAGAGGTGTCTTCAGAGCTGAGAGGCAAACTATAGTGATGGTTTTTTAGATGCTAATGAAAATGCAACAGCAAAAGAGCTGCTTAACAGATCAGCAGTTTTGCTTAGGCTGTTTGCATCATTCTGCACTAAAGCACTCCCTTACGATTGTGGCTTGACATATCGTACAATATGACTCCAGAAGTCTTGAGTAAAAGCCAAGACGGACTGAAAATGCACGTCACACTAGACTTCAAGCATGCAAAATTACTTTAGACCCTGTTTACAATGAATTTGCGCAGCAGGATATGATGTCATGCTCTAGGGCTTCTTGTTTTAATAAATAATAAAATATGAATAACTACTAATAATGCAGTCTAGTGTGACCGCATCCAACTTCAGTCAAGATTGAAATTGAAATGGTACTATACAAATAATGTTTCACCAGGAGTGATTGATGCCAGACTGCTCATTCATCAGAACGAACGCAAAGCAAATTTGATAGTAACGTGATGGGAATGCTAAATAATGAAAAATTTGTTTTGCATAAAATATTAAA

Function

symbol description
slc8a2b Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human SLC8A2 (solute carrier family 8 member A2).
slc8a2a Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in ovary. Orthologous to human SLC8A2 (solute carrier family 8 member A2).
slc8a2 Predicted to enable calcium:sodium antiporter activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000242_00546022_00570147.mRNA True 3924 mRNA 0.49 11 545037 570383

Neighbor

gene id symbol gene type direction distance location
CI01000242_00508735_00531321 NA coding downstream 13392 508561 ~ 531645 (-)
CI01000242_00499626_00500135 KCNE4 coding downstream 44347 499541 ~ 500690 (-)
CI01000242_00475400_00477268 NA coding downstream 66977 475357 ~ 478060 (-)
CI01000242_00457985_00464094 FLJ13639 coding downstream 80943 456146 ~ 464094 (-)
CI01000242_00385392_00398812 NA coding downstream 146225 385227 ~ 398812 (-)
G398343 NA non-coding downstream 1525 543162 ~ 543512 (-)
G398337 NA non-coding downstream 46296 497978 ~ 498741 (-)
G398308 NA non-coding downstream 107281 429683 ~ 437756 (-)
G398325 NA non-coding downstream 146434 397860 ~ 398603 (-)
G398346 NA non-coding upstream 1288 571671 ~ 577089 (-)
G398341 NA non-coding upstream 27115 597498 ~ 598788 (-)
G398345 NA non-coding upstream 28545 598928 ~ 604457 (-)
G398342 NA non-coding upstream 36168 606551 ~ 614248 (-)
CI01000242_00300190_00331091 NA other downstream 213661 300147 ~ 331091 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008770 slc8a2b coding NC_007126.7 CM002899.2 42767803 ~ 42981467 (+)