XLOC_012345 (fam161b)


Basic Information

Item Value
gene id XLOC_012345
gene name fam161b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44980837 ~ 45009782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024275
TGCTGAATAAACTGTTTACCGTCTAAAATGATATGGTTTGTGTCTAATATTCCTGTAGAACATACTGTTACTCTATAGCACACAgcgcagtatgtgtgtgtgttatgctgAGGCGCTGGTGGGTGGAGAAAAGGCTGGTCACCGGTGCAGCAGAGATCATGATATTTGGCGATTCCTATGAAATGGACTGTGCTTTGATCTTTCACAGTTGATGGATCAGTATTTGAATGATGATGTCCTCCTTACGGGCCTGATCACACCATGGATCAGATGACAATGATCTCTCCCACTTTAGATTTCTCTAGATCTGAAGAGGGAGACAATGCGCATGTTTCAGAAAGCCTGCTGTCGCTTATAGAGGACAGGAAGAAGACTGAACAATCTATGGAGTTGCATTTGGAGGCTCTGAAGGTCAAACGCAAGCAGCAGGTGGAGAATTTAGAGCTTCAGCACCAGACTGGCCTGGAGAAGAGGGTCCTGCAGAACTCACTGCTGACCACCAGCACTGAGTGGATGCTTAAAACCAATATAGTGCAGCAGAGCATCAGCGATCATGATGGGCCGGATCGTAAACACCACAGCTCAAAAATGGTTGTTCGAAATTCTACCTCAAATAGAATTAAGGCAGCAAGAACTACTGGAAGCCGTTATTTGGGAACAGAGATAGAGAGATACAGGAAGCCTCTTCCCCAAGACTCACGGAAAGCCAAAGAGGAGGCAGATTTGGCTGAGTGTCAGAAACAGTTTCGTGTGGCTCCTGTCCCTGAGCACATCTCTAAAGCTCTTTACGATGGCCTCATGCATGAACAGGAGCGCTTGAGGCAGGAAGGTCGTGAGCAGAGAAGAGATTTCCTCTTGACCATGCAGAAGCCCTTCATGTTCCTCAAGAGGGAGGAGAAAAAGCGAGAGAGGCTGAGGGAGGAGAAGGCCTCTGCCAATAAAAGTGTAAAAACACAACCGGTTCATGTGAGGAAACCAATACCGAAATCAGTCTCAGACCCCAGGTTCTCTGAACGATTGAAAGAACAGGATCAGCAAAGGCAGATGCGCATTCATCTGAGAGCTCAACAGACTCTGAAAGCCGCTTCAGCTCCTATTCAAGAGCAGGAAGCCAGTGCTGATAAGCAGCCTCGCAGCACTCAGAAGAGCAAAAGCAAGATGCTGGGTTATTTGGACCAAGAGCTCTCCTTCAGACCTAAAATTAACACCACTGTACCTGACTTTGACAAGCTCCACCAGGCCTTTCAACAGAAGTCAATGGAGACGACAGAAAGGCGAGACGTTACTCAGTGTAAACCCTTCCAGCTGCGCACATCCACACTACAGCCTCGCCACCGGAGTCCAGAAAACTCAAAGAATTCTACAGACAAGGTGACTATAAAGAGAAGCAGTTCGTTTGGTGGCCTGACATCTCTATCTATGGATACTCTTCCAACGTACATAACAGATGCTGCGAGGAAAAGATCTATGGCTGTAAGGAGATCTCTGGAGCTAAAGGACCTGAAGGAGCAGGAGAATGCAGACTGGATGAAGCAGCACAGAATCAGATCTCAGGCTATGAGCAAAGCAGTGGCGATGAGAGCAAAAGCAATGGACCCCCATAAGAGTCTCAAAGAGGTCTACCAGGAGAAACTCAAACAGCATCGGCTAGCTGATCTGGAGAGAATAAAAGATTATCAAAGAGAGCTGAAGGAAATGAAAACACGAGTGACAGTGCGTCCATATCTCTTTGAGCAGGTTTCGCAGAAAAATGCCAAAAATAATGCTGAACGCAGGTATAGGAACACTTTAGAACAAGCAGGCTTGGACGAAAACTTTGTGAGATCAAAAGGAGAAAGGAAAAAGGGCAGTGATGTGGACAATGACTCTGCGGATGAGGATCATCACAGCACTGAAAGCGAAACTCAAAAGAGTACAGGAAGTGAGGAGGACGGCGTCACAAATGAGGAGGAAAAAGAAGTGCATGTGGAAACCAAAGAGGAAGAGACGTGCTGACAGAAAACGTGTATAACATCGATATTCCATATGTGAAGGGGAGACTGATGGAAAAAATCACTGGCAGATCATTTCAGTTTTAAAGGGGGTCATGAAATGCTGTTTCAGTCTTTTATATTAAGTTCCTCAATGTTGCTTTAAAGCTTGCATAGATTCTTGTCacaaaaaatgtatcattttgctaaaaataattgtttgcgtTCTAAGTGTTTTGCATATCACTATCTGTACATTGTCATTACCTTTTacagaaacaacaaaaacatccACTGCTCTGACTGGCTGTTATTCAGAATCCATAGCCCTCAAATcagatcaaatcaaatcaaatcacttttattgtt

Function

symbol description
fam161b Predicted to be involved in cilium organization. Predicted to colocalize with cilium. Orthologous to human FAM161B (FAM161 centrosomal protein B).

GO:

id name namespace
GO:0044782 cilium organization biological_process
GO:0005929 cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120928-1 Predicted to be involved in cilium organization. Predicted to colocalize with cilium. Orthologous to human FAM161B (FAM161 centrosomal protein B).

Ensembl:

ensembl_id ENSDARG00000089467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024275 True 2339 mRNA 0.45 9 44980837 45009782

Neighbor

gene id symbol gene type direction distance location
XLOC_012344 NA coding downstream 6449 44966956 ~ 44974388 (-)
XLOC_012343 ngb coding downstream 12430 44961908 ~ 44968407 (-)
XLOC_012342 zdhhc22 coding downstream 204613 44767725 ~ 44776224 (-)
XLOC_012341 NA coding downstream 291907 44686138 ~ 44688930 (-)
XLOC_012340 slc35f4 coding downstream 395899 44502707 ~ 44584938 (-)
XLOC_012346 entpd5a coding upstream 20625 45030407 ~ 45040813 (-)
XLOC_012347 aldh6a1 coding upstream 61749 45071531 ~ 45104750 (-)
XLOC_012348 zgc:163014 coding upstream 104233 45114015 ~ 45125537 (-)
XLOC_012349 tmed8 coding upstream 126571 45136353 ~ 45164291 (-)
XLOC_012350 ttbk2a coding upstream 206302 45216084 ~ 45254585 (-)
XLOC_012339 NA non-coding downstream 482212 44482087 ~ 44498625 (-)
XLOC_012336 NA non-coding downstream 571214 44354824 ~ 44409623 (-)
XLOC_012334 NA non-coding downstream 864760 44070341 ~ 44116077 (-)
XLOC_012353 NA non-coding upstream 439287 45449069 ~ 45452814 (-)
XLOC_012354 NA non-coding upstream 474862 45484644 ~ 45485472 (-)
XLOC_012359 AL953848.2 non-coding upstream 1551358 46561140 ~ 46722470 (-)
XLOC_012360 NA non-coding upstream 1628482 46638264 ~ 46638723 (-)
XLOC_012361 AL953848.1 non-coding upstream 1660225 46670007 ~ 46670103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000315_00912164_00920580 NA coding CI01000315 null 911888 ~ 920580 (-)