XLOC_012356 (susd4)


Basic Information

Item Value
gene id XLOC_012356
gene name susd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45529453 ~ 45552631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024296
GCGGGCTTATTTTGCTTTCGATAACCTAGTGAAGCGCGGACAACAGCTGAAGAAGTGTTATTAAACTAGTAGTTATTAAATAATTGACCACCTCGACAGCCCACTGAAGGAGAAAGTCCGGTGCAACTGAATTTCCATGTACGGCATCAGTGGTAGgtgacaataataaattaataataatgtgcgAAGAACAACTATTTTTAAATCGGCAGTACCGCGTCATTAGACTAGATTTCAACTGAGTAAGGTAGAGCAGTGACGCATATGACGCATTTTACATCACCATCCTGATCATCGTATATTAACACGGCATCGTTATGTTTCACGAGCCTCCTCCTGATCTGCCGAAGACAATtgaataatgcataataatgcGTGGCGGATATGCGATGCGCGCGTACCCGAAAAGACTATTCTGGTATTTACCAATTGATATGGGGATTTACTGGTCATCATGTACTGCGCGTCGGCGAGGAGATTCCGCAGGGCTGAAAATCCGTGATGCAATCCCAATAGATTTCATATTTTCACGCTTCACCTAGCTTGTTTTGTCGTTGTCATCGTCATTTCAGAGCATTGTGACCCGATGAATTTTATTCAGTGAAAGATGTTTCATCATGCTGATAAAGGAGGCAAGAAATCTGCGTTTGGACATCCTGTCTGCGGGCAGATTATTCTCTCCATCATCCTCCTCCGCCCTCCTTTACTGGTCACCGCCTTCCCGGTTAACACAGTAGAGGAGCAGATCTGCAAGGATCCTGGTTTTCCAGAGCATGGCATCAGAACTCCAAGCATCGGGAAGTTTTTTGAAAACTCAGTGGCCAGGTTCTCTTGTGCAGATGGTTTTAGTTTAAAGGGGCCAGCCAAGATTATCTGCACGCGCTTCTATAATGGATCGTTAGGCTGGAAACCAAGCCTTAAACCAGTGTGCCTTTCAGAAGATTGTCTTCCTCCATTCATCGAGGACGCTGATGTCACAAATAGGACATACAGGCCTGGTGACAGCCTCATTATTAGCTGTCATGAGGGATTTCAGATCCGATATCCTGACACAGAAACTATGGAATCAGTCTGTCAGGCGGATGGGACATGGGATAATCAGCCAACCTGTCAAGGCTGCCTGCGACCGCTAATACCGCCACACAGCTACATGAACATCTCGGAAACTAAGTTCTCTGTGCCTGTTGGAACTGTTGTCCACTATCAGTGCTTTCCTGGATACAAATTGGAGGGACCTGAACTTCTGGAATGCATGTATAACCTCATCTGGTCAGATACGCCACCCCGGTGCCTTGATGTTGAGGCATGCTCTTTACCGCCAATGATAGAACATGGAGATTACACGTGCCACCCTCATCCATGTGACCGATACATTCACGGGACGGTCGTGGAGTACTACTGTTATCCTGGCTACTCTCTAGCGAATGACTACAAGTACATCACCTGCCAGTATGGCCAGTGGTTTCCACAAATGCAGCTCTACTGCGTCAAAGATGAAACAACCTGGCCTGGTTTCCAGGATTCTCTACTGACCACATGGAAAGTCGTGGCTTGTACGGCCACTAGTGTGCTGCTAGCCCTGCTCTTGGTCATCACGGCCAAGATGTTTCACTACAAATGCAAATCACAGCAAAGTCCAAGCGATGAACCAGATGAAAGTCGGGATCCAAACATCTTGGTTGTGGATGGAGTCGCCGTACCTCTTCCCTCCTATGAAGAAGCTATAAGTGGCAATTACTGTCAACCCCCAAACGATCTGCCTCCTGATGGTCTGGAGAGCGCTCAGCATTCAGAAGAACAGAACCCGCCTTCATATCCCGGACATACGGGAAGCCAAAACAGTGTGCCGCTGGACACCGGTGATGTCGAGAACTGCGACAGCCTCTCAGACACATCAGAATGCCTTCAAGGCCTACAGCCATCTTCATCTCATCCCGGTGGACTCAACATGTCTGAGAAAACCAATGCCATCACCTCCATGGAGGAAACCGCATCCACGAGCCCCAGTATAGACATTGCAGACGAAATTCCTCTGGTGGAGGATGGAGAAGAGGACTGCTGATTCTTCACTTTAACTGAAAATGGGATACTTGAGATCGTTCGACTCcactttttattatttcattatttttttctgatttacaAACTAATTATTGCTCATTTGAAATGGCTGCACATCAATATTTAATGAACAGCACACCAGGGCAGGAtaggcaataaaataaataaataatgaataaagggaACTATGCATTCGATTCACGcattatattaatcttatttgaTACACGGCATTAAATTATTGTTCTTTTGACTCTCGCTTGGAAACTGTTGCTGCAGTTTTGGACAGCTTTCAAAAGGTACGGACTGTAATGATGAACTTTTCTTAAATAAAGGACAAGGGAGCTTTATGTTATTTGAactgaatgaatgtttaatgtgCACTTTATCCATGCAGGCTAATGGATGAGTATACAGGTACAGCTTAAAAGAAGATGCAAACATTATGAGAAGCTCATACAGATGGTCTAAAAAAGGCTGCTCAAGTAGTTTTGcatgtaatcttttttttcttttaaagttggTTACGTTCAACAGAGCAAAAAGTTTAGGTAAATCATGCACTTCCTAAACCTTAACATCAACATGTATGATGTGATATGGAAAAAAGTGCTATTATCAtgggcagttaaaaaaaaaatcatgaatattGTTTACATATAACCTAATACTCcagtgaatgtaaaaaaaaaaaaaaaaagtttaaagtttttaaatattaccaTCCCAGCAGGTACAcgacatcataagatgt
>TCONS_00024297
TGAAGCGCGGACAACAGCTGAAGAAGTGTTATTAAACTAGTAGTTATTAAATAATTGACCACCTCGACAGCCCACTGAAGGAGAAAGTCCGGTGCAACTGAATTTCCATGTACGGCATCAGTGAGCATTGTGACCCGATGAATTTTATTCAGTGAAAGATGTTTCATCATGCTGATAAAGGAGGCAAGAAATCTGCGTTTGGACATCCTGTCTGCGGGCAGATTATTCTCTCCATCATCCTCCTCCGCCCTCCTTTACTGGTCACCGCCTTCCCGGTTAACACAGTAGAGGAGCAGATCTGCAAGGATCCTGGTTTTCCAGAGCATGGCATCAGAACTCCAAGCATCGGGAAGTTTTTTGAAAACTCAGTGGCCAGGTTCTCTTGTGCAGATGGTTTTAGTTTAAAGGGGCCAGCCAAGATTATCTGCACGCGCTTCTATAATGGATCGTTAGGCTGGAAACCAAGCCTTAAACCAGTGTGCCTTTCAGAAGATTGTCTTCCTCCATTCATCGAGGACGCTGATGTCACAAATAGGACATACAGGCCTGGTGACAGCCTCATTATTAGCTGTCATGAGGGATTTCAGATCCGATATCCTGACACAGAAACTATGGAATCAGTCTGTCAGGCGGATGGGACATGGGATAATCAGCCAACCTGTCAAGGCTGCCTGCGACCGCTAATACCGCCACACAGCTACATGAACATCTCGGAAACTAAGTTCTCTGTGCCTGTTGGAACTGTTGTCCACTATCAGTGCTTTCCTGGATACAAATTGGAGGGACCTGAACTTCTGGAATGCATGTATAACCTCATCTGGTCAGATACGCCACCCCGGTGCCTTGATGTTGAGGG

Function

symbol description
susd4 Acts upstream of or within chordate embryonic development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD4 (sushi domain containing 4).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0030449 regulation of complement activation biological_process
GO:0045957 negative regulation of complement activation, alternative pathway biological_process
GO:0045959 negative regulation of complement activation, classical pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-110511-1 Acts upstream of or within chordate embryonic development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD4 (sushi domain containing 4).

Ensembl:

ensembl_id ENSDARG00000026335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024296 False 2815 mRNA 0.43 8 45529453 45552631
TCONS_00024297 True 856 mRNA 0.47 5 45544812 45552602

Neighbor

gene id symbol gene type direction distance location
XLOC_012355 hhipl2 coding downstream 3517 45501378 ~ 45525936 (-)
XLOC_012354 NA coding downstream 43981 45484644 ~ 45485472 (-)
XLOC_012353 NA coding downstream 76639 45449069 ~ 45452814 (-)
XLOC_012352 pacc1 coding downstream 142319 45378908 ~ 45387134 (-)
XLOC_012351 znf106a coding downstream 150980 45347726 ~ 45378473 (-)
XLOC_012357 arf6b coding upstream 179234 45731865 ~ 45734459 (-)
XLOC_012358 CABZ01084273.1 coding upstream 898740 46451371 ~ 46457622 (-)
XLOC_012359 AL953848.2 coding upstream 1008509 46561140 ~ 46722470 (-)
XLOC_012360 NA coding upstream 1085633 46638264 ~ 46638723 (-)
XLOC_012361 AL953848.1 coding upstream 1117376 46670007 ~ 46670103 (-)
XLOC_012344 NA non-coding downstream 555065 44966956 ~ 44974388 (-)
XLOC_012341 NA non-coding downstream 840523 44686138 ~ 44688930 (-)
XLOC_012339 NA non-coding downstream 1030828 44482087 ~ 44498625 (-)
XLOC_012362 NA non-coding upstream 1127797 46680428 ~ 46681496 (-)
XLOC_012363 NA non-coding upstream 1143459 46696090 ~ 46698812 (-)

Expression


Co-expression Network