XLOC_012357 (arf6b)


Basic Information

Item Value
gene id XLOC_012357
gene name arf6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45731865 ~ 45734459 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024298
TTTCACACTGAACTCGGCTGAATTTAGGAGTGAACACCGGGTTGAGACTGCTAGAGAATGCTGGGCCTCCGCAGGGGCACGTGAGACAGTTCGAATTCGGGACGGTTGAAATTGATGCGGCTCCTCTTCGGACGGCCCAGATGACAGACTCGCAGCTCGGCCAAATGAACGCTTTTCCGCCGAGGCTTTAGACGTCTTCAGCTGCTATCCGGTTACATTTAGGGGGAAGGACGTGAGAGAACCCTCGAGACGGACATTCACACGCCAAGAGGAAGTCTTGAAAGACCGCAGGCTCTTAAAGAGGCCTCGccgcactgaacacacacacaggaaaagCCCCGAAATCGCTACTTTGTCGCAGTTTGGTGGATTATCATTATCGACTGTGGTGTTTTTCAAAGTATTAACACCCTAAAACCGAAGCAAAGTCGAACTTTGACCTTTACATTTGTGCGTGTTGTACTGAAAGTTTTCAGTACTGTCATTTATGCTAATCAGCAGTACAGTGGTGCTTATTGCTTGGAAATATATTCCCCATTCAGAAACATCACTTCCAAAATTGACATTCCTATAAACAAATCAAACTTTTAGTAACTCCTGCTACAAGGtttataattgtttttcttttggagGGAATTGACCATTTATGAACAGTTTACAAGATGGGGAAGATGCTGTCAAAGATATTCGGTAACAAAGAGATGAGAATATTGATGCTGGGTCTGGATGCGGCAGGGAAGACCACCATCCTTTATAAGTTGAAACTCGGCCAGTCTGTGACCACCATCCCCACTGTGGGTTTCAACGTAGAGACGGTCACCTACAAAAACGTCAAGTTCAACGTGTGGGACGTGGGCGGACAAGACAAGATCCGTCCCCTCTGGCGACATTATTACACAGGCACGCAGGGGTTAATTTTCGTGGTGGATTGCGCAGATAGAGATCGCATAGACGAGGCCAGGCAGGAACTCCACCGCATCATCAACGACCGAGAGATGCGGGACGCCATCATTTTGATTTTCGCCAACAAGCAAGACCTGCCGGACGCCATGAAGCCGCATGAGATCCAGGAGAAGCTGGGACTGACACGTATCCGGGATAGAAACTGGTACGTGCAGCCCTCATGTGCGACCACTGGAGATGGACTGTAcgaaggcttaacttggttaacaTCTAACTACAAGTCTTAATGACTCTGGCACTGACTGTTTAGGACAAATGAACTGGATATTGGAGCAAATCAGACCTCTCCAACGAATATATTCGTGCTGTTTTGATTTagagttaacatttatttttggtttgttttcaaACGGGCCTTTTTGAAGCGACGTAATGGGGTTGGCTTGCTTTCAGTTTCCTGTGTACTGTGACAGCTGTCACACACATCTCGGACTCTTGCTTAACAATGATAAAGCATTCCTAAATGAAgattctctattttttttttcctccctttCGTTGATTGATTGTAGGTTTTTCTATATTTGTTTTCTCTACTTCAGCTTCTTTGAGTCAAAAAAGTCTTGGAGTTTGTCTCCACCAAACAGTCCAACAGCGTGTTAAAGGCATTTTATACCGAAATGTATCGAGGCATCCACTGTAGCAAAGCACAGATTTGCTGAGGAGGTTGTAGCATACTAATTGTAGGTAGCTATGTGGTGTAACAGGTTTTGAACCGTGCCATAGTTATGATATCACTGACATCCAACGATAATCAACATGTAAATGAGTCCATGGAACATTTTATGCAAAAAGCCTAATCGTTGATGGCGGGCTTACCACAGACATAACTTGTATTCACAGAGCATAATCAAACTCAAAAGCTTGAAAATCCACAGGAAGTCCATGAGTGTTTGCATTGCGATGCCCAAAACCAGTTTAATGTTAAAGAGACTTCACTTTCAAACATCATGGGGATGCCTTTTGCAGCCCCTTTACCATTTTGGCTAATTGCATTGGCCTGATTGTCTTTGACACTCACACGTATGTCTCTCAAATGTGGGATTGTTACATTCAAGTGTAGTTGCTTGCAATAGAGTGGACTAAACTGTTCATTTTGGGGAGAAATGTTTCATTCTGTTCATTCCCTCTCTCTTTGCTTTAATCATTTTGAGAAACATCCATGTACAGAAACAGCTATGTAATTGTCAAATTAAACTTAGTCATTTTAA
>TCONS_00024299
ATATTTCACGTTAGTAGTCGATTTGTTCTTGTGTTATTGCTAATGATATTGAAATAACTAATAATGCATTTCTTGCTAACTACCCTGAGCGTTGATACTAAATAAAATGCGTGCATTTGAAAGCGTTGACGTCGTCAGTTTCACACTGAACTCGGCTGAATTTAGGAGTGAACACCGGGTTGAGACTGCTAGAGAATGCTGGGCCTCCGCAGGGGCACGTGAGACAGTTCGAATTCGGGACGGTTGAAATTGATGCGGCTCCTCTTCGGACGGCCCAGATGACAGACTCGCAGCTCGGCCAAATGAACGCTTTTCCGCCGAGGCTTTAGACGTCTTCAGCTGCTATCCGGTTACATTTAGGGGGAAGGACGTGAGAGAACCCTCGAGACGGACATTCACACGCCAAGAGGAAGTCTTGAAAGACCGCAGGCTCTTAAAGAGGCCTCGccgcactgaacacacacacaggaaaagCCCCGAAATCGCTACTTTGTCGCAGTTTGGTGGATTATCATTATCGACTGTGGTGTTTTTCAAAGTATTAACACCCTAAAACCGAAGCAAAGTCGAACTTTGACCTTTACATTTGTGCGTGTTGTACTGAAAGTTTTCAGTACTGTCATTTATGCTAATCAGCAGTACAGTGGTGCTTATTGCTTGGAAATATATTCCCCATTCAGAAACATCACTTCCAAAATTGACATTCCTATAAACAAATCAAACTTTTAGTAACTCCTGCTACAAGGtttataattgtttttcttttggagGGAATTGACCATTTATGAACAGTTTACAAGATGGGGAAGATGCTGTCAAAGATATTCGGTAACAAAGAGATGAGAATATTGATGCTGGGTCTGGATGCGGCAGGGAAGACCACCATCCTTTATAAGTTGAAACTCGGCCAGTCTGTGACCACCATCCCCACTGTGGGTTTCAACGTAGAGACGGTCACCTACAAAAACGTCAAGTTCAACGTGTGGGACGTGGGCGGACAAGACAAGATCCGTCCCCTCTGGCGACATTATTACACAGGCACGCAGGGGTTAATTTTCGTGGTGGATTGCGCAGATAGAGATCGCATAGACGAGGCCAGGCAGGAACTCCACCGCATCATCAACGACCGAGAGATGCGGGACGCCATCATTTTGATTTTCGCCAACAAGCAAGACCTGCCGGACGCCATGAAGCCGCATGAGATCCAGGAGAAGCTGGGACTGACACGTATCCGGGATAGAAACTGGTACGTGCAGCCCTCATGTGCGACCACTGGAGATGGACTGTAcgaaggcttaacttggttaacaTCTAACTACAAGTCTTAATGACTCTGGCACTGACTGTTTAGGACAAATGAACTGGATATTGGAGCAAATCAGACCTCTCCAACGAATATATTCGTGCTGTTTTGATTTagagttaacatttatttttggtttgttttcaaACGGGCCTTTTTGAAGCGACGTAATGGGGTTGGCTTGCTTTCAGTTTCCTGTGTACTGTGACAGCTGTCACACACATCTCGGACTCTTGCTTAACAATGATAAAGCATTCCTAAATGAAgattctctattttttttttcctccctttCGTTGATTGATTGTAGGTTTTTCTATATTTGTTTTCTCTACTTCAGCTTCTTTGAGTCAAAAAAGTCTTGGAGTTTGTCTCCACCAAACAGTCCAACAGCGTGTTAAAGGCATTTTATACCGAAATGTATCGAGGCATCCACTGTAGCAAAGCACAGATTTGCTGAGGAGGTTGTAGCATACTAATTGTAGGTAGCTATGTGGTGTAACAGGTTTTGAACCGTGCCATAGTTATGATATCACTGACATCCAACGATAATCAACATGTAAATGAGTCCATGGAACATTTTATGCAAAAAGCCTAATCGTTGATGGCGGGCTTACCACAGACATAACTTGTATTCACAGAGCATAATCAAACTCAAAAGCTTGAAAATCCACAGGAAGTCCATGAGTGTTTGCATTGCGATGCCCAAAACCAGTTTAATGTTAAAGAGACTTCACTTTCAAACATCATGGGGATGCCTTTTGCAGCCCCTTTACCATTTTGGCTAATTGCATTGGCCTGATTGTCTTTGACACTCACACGTATGTCTCTCAAATGTGGGATTGTTACATTCAAGTGTAGTTGCTTGCAATAGAGTGGACTAAACTGTTCATTTTGGGGAGAAATGTTTCATTCTGTTCATTCCCTCTCTCTTTGCTTTAATCATTTTGAGAAACATCCATGTACAGAAACAGCTATGTAATTGTCAAATTAAACTTAGTCATTTTAA
>TCONS_00024300
TGACCATTTATGAACAGTTTACAAGATGGGGAAGATGCTGTCAAAGATATTCGGTAACAAAGAGATGAGAATATTGATGCTGGGTCTGGATGCGGCAGGGAAGACCACCATCCTTTATAAGTTGAAACTCGGCCAGTCTGTGACCACCATCCCCACTGTGGGTTTCAACGTAGAGACGGTCACCTACAAAAACGTCAAGTTCAACGTGTGGGACGTGGGCGGACAAGACAAGATCCGTCCCCTCTGGCGACATTATTACACAGGCACGCAGGGGTTAATTTTCGTGGTGGATTGCGCAGATAGAGATCGCATAGACGAGGCCAGGCAGGAACTCCACCGCATCATCAACGACCGAGAGATGCGGGACGCCATCATTTTGATTTTCGCCAACAAGCAAGACCTGCCGGACGCCATGAAGCCGCATGAGATCCAGGAGAAGCTGGGACTGACACGTATCCGGGATAGAAACTGGTACGTGCAGCCCTCATGTGCGACCACTGGAGATGGACTGTAcgaaggcttaacttggttaacaTCTAACTACAAGTCTTAATGACTCTGGCACTGACTGTTTAGGACAAATGAACTGGATATTGGAGCAAATCAGACCTCTCCAACGAATATATTCGTGCTGTTTTGATTTagagttaacatttatttttggtttgttttcaaACGGGCCTTTTTGAAGCGACGTAATGGGGTTGGCTTGCTTTCAGTTTCCTGTGTACTGTGACAGCTGTCACACACATCTCGGACTCTTGCTTAACAATGATAAAGCATTCCTAAATGAAgattctctattttttttttcctccctttCGTTGATTGATTGTAGGTTTTTCTATATTTGTTTTCTCTACTTCAGCTTCTTTGAGTCAAAAAAGTCTTGGAGTTTGTCTCCACCAAACAGTCCAACAGCGTGTTAAAGGCATTTTATACCGAAATGTATCGAGGCATCCACTGTAGCAAAGCACAGATTTGCTGAGGAGGTTGTAGCATACTAATTGTAGGTAGCTATGTGGTGTAACAGGTTTTGAACCGTGCCATAGTTATGATATCACTGACATCCAACGATAATCAACATGTAAATGAGTCCATGGAACATTTTATGCAAAAAGCCTAATCGTTGATGGCGGGCTTACCACAGACATAACTTGTATTCACAGAGCATAATCAAACTCAAAAGCTTGAAAATCCACAGGAAGTCCATGAGTGTTTGCATTGCGATGCCCAAAACCAGTTTAATGTTAAAGAGACTTCACTTTCAAACATCATGGGGATGCCTTTTGCAGCCCCTTTACCATTTTGGCTAATTGCATTGGCCTGATTGTCTTTGACACTCACACGTATGTCTCTCAAATGTGGGATTGTTACATTCAAGTGTAGTTGCTTGCAATAGAGTGGACTAAACTGTTCATTTTGGGGAGAAATGTTTCATTCTGTTCATTCCCTCTCTCTTTGCTTTAATCATTTTGAGAAACATCCATGTACAGAAACAGCTATGTAATTGTCAAATTAAACTTAGTCATTTT

Function

symbol description
arf6b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and intrahepatic bile duct development. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9056 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and intrahepatic bile duct development. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).

Ensembl:

ensembl_id ENSDARG00000052928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024298 False 2174 mRNA 0.44 2 45731865 45734231
TCONS_00024299 False 2312 mRNA 0.43 3 45731865 45734459
TCONS_00024300 True 1535 mRNA 0.43 1 45731867 45733401

Neighbor

gene id symbol gene type direction distance location
XLOC_012356 susd4 coding downstream 179234 45529453 ~ 45552631 (-)
XLOC_012355 hhipl2 coding downstream 205929 45501378 ~ 45525936 (-)
XLOC_012354 NA coding downstream 246393 45484644 ~ 45485472 (-)
XLOC_012353 NA coding downstream 279051 45449069 ~ 45452814 (-)
XLOC_012352 pacc1 coding downstream 344731 45378908 ~ 45387134 (-)
XLOC_012358 CABZ01084273.1 coding upstream 716912 46451371 ~ 46457622 (-)
XLOC_012359 AL953848.2 coding upstream 826681 46561140 ~ 46722470 (-)
XLOC_012360 NA coding upstream 903805 46638264 ~ 46638723 (-)
XLOC_012361 AL953848.1 coding upstream 935548 46670007 ~ 46670103 (-)
XLOC_012362 NA coding upstream 945969 46680428 ~ 46681496 (-)
XLOC_012344 NA non-coding downstream 757477 44966956 ~ 44974388 (-)
XLOC_012341 NA non-coding downstream 1042935 44686138 ~ 44688930 (-)
XLOC_012339 NA non-coding downstream 1233240 44482087 ~ 44498625 (-)
XLOC_012363 NA non-coding upstream 961631 46696090 ~ 46698812 (-)

Expression


Co-expression Network