RNA id: TCONS_00024300


Basic Information

Item Value
RNA id TCONS_00024300
length 1535
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_012357
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45731865 ~ 45734459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACCATTTATGAACAGTTTACAAGATGGGGAAGATGCTGTCAAAGATATTCGGTAACAAAGAGATGAGAATATTGATGCTGGGTCTGGATGCGGCAGGGAAGACCACCATCCTTTATAAGTTGAAACTCGGCCAGTCTGTGACCACCATCCCCACTGTGGGTTTCAACGTAGAGACGGTCACCTACAAAAACGTCAAGTTCAACGTGTGGGACGTGGGCGGACAAGACAAGATCCGTCCCCTCTGGCGACATTATTACACAGGCACGCAGGGGTTAATTTTCGTGGTGGATTGCGCAGATAGAGATCGCATAGACGAGGCCAGGCAGGAACTCCACCGCATCATCAACGACCGAGAGATGCGGGACGCCATCATTTTGATTTTCGCCAACAAGCAAGACCTGCCGGACGCCATGAAGCCGCATGAGATCCAGGAGAAGCTGGGACTGACACGTATCCGGGATAGAAACTGGTACGTGCAGCCCTCATGTGCGACCACTGGAGATGGACTGTAcgaaggcttaacttggttaacaTCTAACTACAAGTCTTAATGACTCTGGCACTGACTGTTTAGGACAAATGAACTGGATATTGGAGCAAATCAGACCTCTCCAACGAATATATTCGTGCTGTTTTGATTTagagttaacatttatttttggtttgttttcaaACGGGCCTTTTTGAAGCGACGTAATGGGGTTGGCTTGCTTTCAGTTTCCTGTGTACTGTGACAGCTGTCACACACATCTCGGACTCTTGCTTAACAATGATAAAGCATTCCTAAATGAAgattctctattttttttttcctccctttCGTTGATTGATTGTAGGTTTTTCTATATTTGTTTTCTCTACTTCAGCTTCTTTGAGTCAAAAAAGTCTTGGAGTTTGTCTCCACCAAACAGTCCAACAGCGTGTTAAAGGCATTTTATACCGAAATGTATCGAGGCATCCACTGTAGCAAAGCACAGATTTGCTGAGGAGGTTGTAGCATACTAATTGTAGGTAGCTATGTGGTGTAACAGGTTTTGAACCGTGCCATAGTTATGATATCACTGACATCCAACGATAATCAACATGTAAATGAGTCCATGGAACATTTTATGCAAAAAGCCTAATCGTTGATGGCGGGCTTACCACAGACATAACTTGTATTCACAGAGCATAATCAAACTCAAAAGCTTGAAAATCCACAGGAAGTCCATGAGTGTTTGCATTGCGATGCCCAAAACCAGTTTAATGTTAAAGAGACTTCACTTTCAAACATCATGGGGATGCCTTTTGCAGCCCCTTTACCATTTTGGCTAATTGCATTGGCCTGATTGTCTTTGACACTCACACGTATGTCTCTCAAATGTGGGATTGTTACATTCAAGTGTAGTTGCTTGCAATAGAGTGGACTAAACTGTTCATTTTGGGGAGAAATGTTTCATTCTGTTCATTCCCTCTCTCTTTGCTTTAATCATTTTGAGAAACATCCATGTACAGAAACAGCTATGTAATTGTCAAATTAAACTTAGTCATTTT

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9056 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and intrahepatic bile duct development. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).

Ensembl:

ensembl_id ENSDART00000185727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024991 lncRNA downstream 246395 45484644 ~ 45485472 (-) True XLOC_012354
TCONS_00024990 lncRNA downstream 279053 45451574 ~ 45452814 (-) True XLOC_012353
TCONS_00024989 lncRNA downstream 279334 45449069 ~ 45452533 (-) False XLOC_012353
TCONS_00024988 lncRNA downstream 477352 45247083 ~ 45254515 (-) True XLOC_012350
TCONS_00024552 lncRNA downstream 757479 44966956 ~ 44974388 (-) True XLOC_012344
TCONS_00024302 lncRNA upstream 827739 46561140 ~ 46722470 (-) False XLOC_012359
TCONS_00024992 lncRNA upstream 904863 46638264 ~ 46638723 (-) True XLOC_012360
TCONS_00024993 lncRNA upstream 906623 46640024 ~ 46640650 (-) False XLOC_012359
TCONS_00024303 lncRNA upstream 906633 46640034 ~ 46640243 (-) False XLOC_012359
TCONS_00024304 lncRNA upstream 906633 46640034 ~ 46722470 (-) False XLOC_012359
TCONS_00024296 mRNA downstream 179236 45529453 ~ 45552631 (-) False XLOC_012356
TCONS_00024297 mRNA downstream 179265 45544812 ~ 45552602 (-) True XLOC_012356
TCONS_00024295 mRNA downstream 205931 45501378 ~ 45525936 (-) True XLOC_012355
TCONS_00024292 mRNA downstream 344733 45378908 ~ 45387134 (-) False XLOC_012352
TCONS_00024301 mRNA upstream 717970 46451371 ~ 46457622 (-) True XLOC_012358
TCONS_00024307 mRNA upstream 1082247 46815648 ~ 46817295 (-) True XLOC_012369
TCONS_00024310 mRNA upstream 1115258 46848659 ~ 46850299 (-) True XLOC_012373
TCONS_00024312 mRNA upstream 1198518 46931919 ~ 46933567 (-) True XLOC_012376
TCONS_00024314 mRNA upstream 1255712 46989113 ~ 46990003 (-) True XLOC_012378
TCONS_00024283 other downstream 580074 45140329 ~ 45151793 (-) False XLOC_012349
TCONS_00024269 other downstream 1248250 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024261 other downstream 1672940 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024257 other downstream 1868243 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024224 other downstream 2889004 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024305 other upstream 936606 46670007 ~ 46670103 (-) True XLOC_012361
TCONS_00024306 other upstream 1006805 46740206 ~ 46740303 (-) True XLOC_012364
TCONS_00024308 other upstream 1086347 46819748 ~ 46819845 (-) True XLOC_012370
TCONS_00024319 other upstream 1776879 47510280 ~ 47510396 (-) True XLOC_012384
TCONS_00024320 other upstream 2429550 48162951 ~ 48163065 (-) True XLOC_012385

Expression Profile

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