XLOC_012313 (mocs3)


Basic Information

Item Value
gene id XLOC_012313
gene name mocs3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42812265 ~ 42842863 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024223
GTGCTCGACACGTGGGCGCACACACGTTGAAATCAGGAAGTCTGCTGCAGTGTGATTTCCAGTTGTGCAGTGTTTTCTTGTCCCTACACTCATAGTTCTAGGCGTTATTGTATCATACGTTTAATAATTTGATATCGAGGTAATTGTTCGTTATGGATGATACAATTGTAAGTTTGAAATCACAGCTGTTGGAAAGAGAGCGAGAGGTTGCAACTTTAAAGAAGAAACTTGATCAAATTGAAAAGGGAAACTCAACATTACCAGAGTTACAGGAGAAAGTAACTAGTCTTTCACCACTGAGATTAAACACATCGCTGAACAATGATGACATCATGAGATACAGCAGGCAGCTTCTCCTGCCAGAACTGGGTGTTAAAGGGCAGATTGCAATTAGTAATATATCTGTTCTTGTTGTGGGATGTGGAGGATTAGGCTGTCCTCTTGCACAGTATCTTGCTGCAGCTGGAATAGGACGCTTGGGTTTGTTGGACTATGATGTGGTGGAACTGAGTAACCTGCACAGACAGGTGCTTCACACAGAACTTACTCAAGGTCAGCCAAAAGCATTGTCTGCCGCTCAGGCCATTAGCAGAATGAACTCCACTGTACAGTGTGTTCCCTATCACCTCCAGCTGTCCAGAGAGAATGCCATACAACTCATCCAACAGTATGACATTGTGGCAGACTGTTCAGACAATGTTCCCACACGGTACCTCGTGAATGATGCCTGTGTTCTGACCAGCAGGCCTTTAGTGTCAGCAAGTGCCTTACGAATGGAAGGACAGCTCACTGTGTACAACTACAGAGGAGGACCATGTTACCGATGTTTGTACCCCATTCCTCCTCCTCCTGAGACCGTCACTAACTGCTCCGATGGAGGCGTTCTGGGAGTCGTGCCTGGAATAATGGGCTGCCTTCAAGCATTGGAAGTTCTAAAAATTGCATCCGGTCAAGAATGCTCATTTGCACAGCAGCTGCTGATGTTTGATGGTGAGCAGACTCGTTTCCGATCCATTCGGCTGCGCTCCCGGCAGAAAGAGTGTGTGGTGTGTGGAGAGAAACCCACCATAACGGAGCTTCAGGACTATGAGCACTTCTGTGGCTCTGCTGCTACTGATAAGTGTCGAAGGCTACATCTCCTAAGCAGAGAACAGAGAGTCTCTGTGCAGGACTATAAAGGCATTCTGGACCATTCAACTCCTCATCTTCTCCTTGATGTTAGACCCAAAGTAGAGGTGGACATTTGTCGTCTGTCAAACTCGCTTCACATTCCACTTGCTAGTTTAGAGGATAAAAAGCCTGAGCACATCACACTCTTAAAAGAGGCTATTAGTGACCTTCAAGAACATTTGAACAACCAATCTCCAGTTCAAGTGTTTGTGGTGTGCAAACTTGGTAATGACTCCCAGAAGGCGGTTCAGTTGCTGGAGAAAATGTCTGGAGCAGAAGTTGAAGCTATGACGGTAAAGGACATCAGTGGAGGATTGATGGCCTGGGCTAAGAAGATTGACCACTGTTTTCCACAGTACTGACCCTAAATAATAACATGTGTATTGattttataaatgaaaacaataaaggTTAAGTCTATCATTTCA
>TCONS_00024224
GCAGCTCGTCAGTGTTGTCAAGATGCCAATAAGAGCCAACAACCTCGAACTAAAGCTCATTTCTGCCATCTCCTCCTCCGCTCTGTCCGCACGACGGTCTCCTGTCGCAAGACAACTCACACGATCATGGAAACTCAACATTACCAGAGTTACAGGAGAAAGTAACTAGTCTTTCACCACTGAGATTAAACACATCGCTGAACAATGATGACATCATGAGATACAGCAGGCAGCTTCTCCTGCCAGAACTGGGTGTTAAAGGGCAGATTGCAATTAGTAATATATCTGTTCTTGTTGTGGGATGTGGAGGATTAGGCTGTCCTCTTGCACAGTATCTTGCTGCAGCTGGAATAGGACGCTTGGGTTTGTTGGACTATGATGTGGTGGAACTGAGTAACCTGCACAGACAGGTGCTTCACACAGAACTTACTCAAGGTCAGCCAAAAGCATTGTCTGCCGCTCAGGCCATTAGCAGAATGAACTCCACTGTACAGTGTGTTCCCTATCACCTCCAGCTGTCCAGAGAGAATGCCATACAACTCATCCAACAGTATGACATTGTGGCAGACTGTTCAGACAATGTTCCCACACGGTACCTCGTGAATGATGCCTGTGTTCTGACCAGCAGGCCTTTAGTGTCAGCAAGTGCCTTACGAATGGAAGGACAGCTCACTGTGTACAACTACAGAGGAGGACCATGTTACCGATGTTTGTACCCCATTCCTCCTCCTCCTGAGACCGTCACTAACTGCTCCGATGGAGGCGTTCTGGGAGTCG

Function

symbol description
mocs3 Predicted to enable URM1 activating enzyme activity; nucleotidyltransferase activity; and thiosulfate sulfurtransferase activity. Predicted to be involved in Mo-molybdopterin cofactor biosynthetic process; protein urmylation; and tRNA wobble position uridine thiolation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human MOCS3 (molybdenum cofactor synthesis 3).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0034227 tRNA thio-modification biological_process
GO:0018192 enzyme active site formation via cysteine modification to L-cysteine persulfide biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0032447 protein urmylation biological_process
GO:0006777 Mo-molybdopterin cofactor biosynthetic process biological_process
GO:0002143 tRNA wobble position uridine thiolation biological_process
GO:0008033 tRNA processing biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004792 thiosulfate sulfurtransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0042292 URM1 activating enzyme activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0061604 molybdopterin-synthase sulfurtransferase activity molecular_function

KEGG:

id description
ko04122 Sulfur relay system
ko03016 Transfer RNA biogenesis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-782 Predicted to enable URM1 activating enzyme activity; nucleotidyltransferase activity; and thiosulfate sulfurtransferase activity. Predicted to be involved in Mo-molybdopterin cofactor biosynthetic process; protein urmylation; and tRNA wobble position uridine thiolation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human MOCS3 (molybdenum cofactor synthesis 3).

Ensembl:

ensembl_id ENSDARG00000008239

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024223 False 1598 mRNA 0.45 13 42812265 42842129
TCONS_00024224 True 777 processed_transcript 0.49 7 42825291 42842863

Neighbor

gene id symbol gene type direction distance location
XLOC_012312 prkd3 coding downstream 13161 42610094 ~ 42799104 (-)
XLOC_012311 foxa2 coding downstream 243767 42565998 ~ 42568498 (-)
XLOC_012310 NA coding downstream 248113 42540854 ~ 42564152 (-)
XLOC_012309 CR925755.2 coding downstream 319597 42486740 ~ 42492668 (-)
XLOC_012308 NA coding downstream 539667 42261845 ~ 42272598 (-)
XLOC_012314 zgc:92137 coding upstream 141120 42983983 ~ 42988356 (-)
XLOC_012315 atg2b coding upstream 162565 43005428 ~ 43012390 (-)
XLOC_012316 NPC2 coding upstream 178799 43021662 ~ 43022468 (-)
XLOC_012317 npc2 coding upstream 187454 43030317 ~ 43031828 (-)
XLOC_012318 EML5 coding upstream 196600 43039463 ~ 43287290 (-)
XLOC_012306 NA non-coding downstream 635277 42167187 ~ 42176988 (-)
XLOC_012304 NA non-coding downstream 719429 42092334 ~ 42092836 (-)
XLOC_012302 NA non-coding downstream 1383339 41382228 ~ 41428926 (-)
XLOC_012319 NA non-coding upstream 407395 43250258 ~ 43251920 (-)
XLOC_012328 NA non-coding upstream 798954 43641817 ~ 43649494 (-)
XLOC_012330 FO704797.1 non-coding upstream 865536 43708399 ~ 43718395 (-)
XLOC_012332 NA non-coding upstream 1161576 44004439 ~ 44010882 (-)
XLOC_012333 BX511267.1 non-coding upstream 1215948 44058811 ~ 44058927 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G446056 NA non-coding CI01000314 null 1048022 ~ 1048459 (+)