XLOC_012302


Basic Information

Item Value
gene id XLOC_012302
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 41382228 ~ 41428926 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024973
TGAAGCGTCATTGGTGACTGAGATTGAATGCAGTGCGAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACGTCAGGGAAGGAGAAAGAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTTCGAAAACTTCTAAATCAGGGAAAGAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGAGCGAAAACTTCCAAGTCAGGGAAAGAGACAGAATTATGTGAAGTCATCAATGGCAAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATGTCGCCATGAAGTACACAGTGCTGTTATTTCCAGTTTGGATTCTAGCGATGATTGTAGTGGTCCTATGTCAAGTAGAACATGAAAACTTCAACTTGCAAATACACCAAATCAAGGAAAGTTATGATAAAATTATGGAGCACACTGAAGTGGATGCAGTCATGGAACATTTTAAAGGGACACCTCACTACAAAAGCAGAGCGTGATCAATGCAAGATAGCAGAAGACCATGTTCTTAAAGAAAGAAGAACAATTGAAGTGACATTATGAGGAACAAAGGGGAAATGCTGATGTAAAAGAAATGTTGGAGTGCATTTCAACAAAGAAAAGCAAAACCTGTTCTTTGAAAGGGTTGGTTCATCCAAATATGAAAATTAGCTCATGATATATTCACCCTGATGTATATGACATTCTTTGTTCAGACGAACACATTAAGAGTTATTTTGAGTTTTCTCTGGGCACTTAAATACTATAATGGATGTGAAGTGTGGGCCTTTTTAGAACACTGAAAAAAGTACAACTGTCCATCTTCAAACCGTTCCAATACATGTCATGTCTTTTGAAGCAAATCAATATGTTTGtaacaaaaatgtttctttttttatgaatTATAAACTACAGTTGCTACTTATGCGTTGGTGACAAGTACCTAACCGAATCAAAGAACAAATCAAAGATGTCCCAAACTTAGCCTACTGGACTTTTTGTGAACGAGAATACAGACATTGGCAGATTCATCATCCCATTGATCTGCTTCAAGACACGTTAACCTCCCAGACGTGTATAGGATAGTTTGACAACAGATATTTGGGCTTTTTTGAGTTTTAAAAGAGGTCACAATTCACTACCATTATAATGTTTGTAAGTGCgctaaaaaattcaaaataactCTTAACGTGTCTAATGCAGTCtcagcctccaccgctgagactgcagctctgcacaagacttttggccagcggataaattaaaatggtcgtgcccaacttaatctggtttctctcaaggttgtTTTTCTTCACTCGcctcggtgaagttttttttttttccctctccgctgtcgccaccagcttgcatggtttgggattggtagagctacccattgatgaatttgctcttcagtgtttgaactctcagtaatgatttaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacaccatttacattgtaaaagcgctatacaaataaagctaaattgaattgaattaaaagaaGAATGTCATGTACACCAAGGATGGCATTACGGTAGGGCACAATGCCAATATTCCCCCTTagtccttccccttacccctaccccttgttttgcgcgttcacgtcaaggggtagggctgtcccaattctctttagcttgaaggcgtagggctaaggggaaggggtgaatagccctttgaacaaagatttttcaggtccacacttgaaaccaaggggtaaaaaaatttcccagaatacacctgccacagctgcacccagaagtaaggagaattttttttatttttatttatttatttttttttttatgacaaacaaacatgtttcaatatattcataaccacgttcatgttttattgtcatagttttttttttttacgctataatttgcaatctataatccataataataactcctttgcagcagtcccacaacattctgacacttgatgacactggaataccctgccAGAAAAGTATAGTGTCTGTGATGAgctgtttacagtgtctgctatgatGTTAGTGtggttttcgtgtgtttacatagatgaatatggccactgtgtgtatatatactgtacagttacaatcttattgccacattagatcattatgataacatgatgtgccttcagtgatttcctcaagataaatatcaaaaaataacacaactgaaataactacagcagttgcgatcatctgatctcatacgAAGCATAAAATCACGATGGCAtatgctgtcccaattcttatggGTACATCTGAAGCCCTTCCCTTTAACTTTTGGTTGTAGGGGCagaggggaaggggtaggggtacaaaaatagaattgggattgggcctaaatcagttttcattttttggttgaactttaAGGGGCAGGACCCTTAAAAATGCTGTCATTAAGCTGTTTTTTAAAGCTTTGTTGAATAAATGCATTTGAGACAGTG
>TCONS_00024205
AGTAAAGCAACTACGAAAGAGAACTATTTGTGCATTTTAAAGCATCGATGCTTCACAAAAGGATGGATAACTGGGATGCCGTAATGATGATCACAGAAATCCGAAATGAAGGCAGTAGTTCTGTTTCTGTTTACTACAAGGAATATCTTTCCAGATGAGGAAATTACCCACAACTATGGTGATTCTTCTTGGCCATGGCATTCAAGGGAATTGCATGAAGCGTCATTGGTGACTGAGATTGAATGCAGTGCGAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACGTCAGGGAAGGAGAAAGAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTTCGAAAACTTCTAAATCAGGGAAAGAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGAGCGAAAACTTCCAAGTCAGGGAAAGAGACAGAATTATGTGAAGTCATCAATGGCAAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACAGTAATGTCGCCATGAAGTACACAGTGCTGTTATTTCCAGTTTGGATTCTAGCGATGATTGTAGTGGTCCTATGTCAAGTAGAACATGAAAACTTCAACTTGCAAATACACCAAATCAAGGAAAGTTATGATAAAATTATGGAGCACACTGAAGTGGATGCAGTCATGGAACATTTTAAAGGGACACCTCACTACAAAAGCAGAGCGTGATCAATGCAAGATAGCAGAAGACCATGTTCTTAAAGAAAGAAGAACAATTGAAGTGACATTATGAGGAACAAAGGGGAAATGCTGATGTAAAAGAAATGTTGGAGTGCATTTCAACAAAGAAAAGCAAAACCTGTTCTTTGAAAGGGTTGGTTCATCCAAATATGAAAATTAGCTCATGATATATTCACCCTGATGTATATGACATTCTTTGTTCAGACGAACACATTAAGAGTTATTTTGAGTTTTCTCTGGGCACTTAAATACTATAATGGATGTGAAGTGTGGGCCTTTTTAGAACACTGAAAAAAGTACAACTGTCCATCTTCAAACCGTTCCAATACATGTCATGTCTTTTGAAGCAAATCAATATGTTTGtaacaaaaatgtttctttttttatgaatTATAAACTACAGTTGCTACTTATGCGTTGGTGACAAGTACCTAACCGAATCAAAGAACAAATCAAAGATGTCCCAAACTTAGCCTACTGGACTTTTTGTGAACGAGAATACAGACATTGGCAGATTCATCATCCCATTGATCTGCTTCAAGACACGTTAACCTCCCAGACGTGTATAGGATAGTTTGACAACAGATATTTGGGCTTTTTTGAGTTTTAAAAGAGGTCACAATTCACTACCATTATAATGTTTGTAAGTGCgctaaaaaattcaaaataactCTTAACGTGTCTAATGCAGTCtcagcctccaccgctgagactgcagctctgcacaagacttttggccagcggataaattaaaatggtcgtgcccaacttaatctggtttctctcaaggttgtTTTTCTTCACTCGcctcggtgaagttttttttttttccctctccgctgtcgccaccagcttgcatggtttgggattggtagagctacccattgatgaatttgctcttcagtgtttgaactctcagtaatgatttaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacaccatttacattgtaaaagcgctatacaaataaagctaaattgaattgaattaaaagaaGAATGTCATGTACACCAAGGATGGCATTACGGTAGGGCACAATGCCAATATTCCCCCTTagtccttccccttacccctaccccttgttttgcgcgttcacgtcaaggggtagggctgtcccaattctctttagcttgaaggcgtagggctaaggggaaggggtgaatagccctttgaacaaagatttttcaggtccacacttgaaaccaaggggtaaaaaaatttcccagaatacacctgccacagctgcacccagaagtaaggagaattttttttatttttatttatttatttttttttttatgacaaacaaacatgtttcaatatattcataaccacgttcatgttttattgtcatagttttttttttttacgctataatttgcaatctataatccataataataactcctttgcagcagtcccacaacattctgacacttgatgacactggaataccctgccAGAAAAGTATAGTGTCTGTGATGAgctgtttacagtgtctgctatgatGTTAGTGtggttttcgtgtgtttacatagatgaatatggccactgtgtgtatatatactgtacagttacaatcttattgccacattagatcattatgataacatgatgtgccttcagtgatttcctcaagataaatatcaaaaaataacacaactgaaataactacagcagttgcgatcatctgatctcatacgAAGCATAAAATCACGATGGCAtatgctgtcccaattcttatggGTACATCTGAAGCCCTTCCCTTTAACTTTTGGTTGTAGGGGCagaggggaaggggtaggggtacaaaaatagaattgggattgggcctaaatcagttttcattttttggttgaactttaAGGGGCAGGACCCTTAAAAATGCTGTCATTAAGCTGTTTTTTAAAGCTTTGTTGAATAAATGCATTTGAGACAGTG
>TCONS_00024974
GGCAATGATTGAATGTGGTTCGAAAAATTTCTACATCAGGGAAGGAGAAAGAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTTCGAAAACTTCTAAATCAGGGAAAGAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGAGCGAAAACTTCCAAGTCAGGGAAAGAGACAGAATTATGTGAAGTCATCAATGGCAAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATGTCGCCATGAAGTACACAGTGCTGTTATTTCCAGTTTGGATTCTAGCGATGATTGTAGTGGTCCTATGTCAAGTAGAACATGAAAACTTCAACTTGCAAATACACCAAATCAAGGAAAGTTATGATAAAATTATGGAGCACACTGAAGTGGATGCAGTCATGGAACATTTTAAAGGGACACCTCACTACAAAAGCAGAGCGTGATCAATGCAAGATAGCAGAAGACCATGTTCTTAAAGAAAGAAGAACAATTGAAGTGACATTATGAGGAACAAAGGGGAAATGCTGATGTAAAAGAAATGTTGGAGTGCATTTCAACAAAGAAAAGCAAAACCTGTTCTTTGAAAGGGTTGGTTCATCCAAATATGAAAATTAGCTCATGATATATTCACCCTGATGTATATGACATTCTTTGTTCAGACGAACACATTAAGAGTTATTTTGAGTTTTCTCTGGGCACTTAAATACTATAATGGATGTGAAGTGTGGGCCTTTTTAGAACACTGAAAAAAGTACAACTGTCCATCTTCAAACCGTTCCAATACATGTCATGTCTTTTGAAGCAAATCAATATGTTTGtaacaaaaatgtttctttttttatgaatTATAAACTACAGTTGCTACTTATGCGTTGGTGACAAGTACCTAACCGAATCAAAGAACAAATCAAAGATGTCCCAAACTTAGCCTACTGGACTTTTTGTGAACGAGAATACAGACATTGGCAGATTCATCATCCCATTGATCTGCTTCAAGACACGTTAACCTCCCAGACGTGTATAGGATAGTTTGACAACAGATATTTGGGCTTTTTTGAGTTTTAAAAGAGGTCACAATTCACTACCATTATAATGTTTGTAAGTGCgctaaaaaattcaaaataactCTTAACGTGTCTAATGCAGTCtcagcctccaccgctgagactgcagctctgcacaagacttttggccagcggataaattaaaatggtcgtgcccaacttaatctggtttctctcaaggttgtTTTTCTTCACTCGcctcggtgaagttttttttttttccctctccgctgtcgccaccagcttgcatggtttgggattggtagagctacccattgatgaatttgctcttcagtgtttgaactctcagtaatgatttaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacaccatttacattgtaaaagcgctatacaaataaagctaaattgaattgaattaaaagaaGAATGTCATGTACACCAAGGATGGCATTACGGTAGGGCACAATGCCAATATTCCCCCTTagtccttccccttacccctaccccttgttttgcgcgttcacgtcaaggggtagggctgtcccaattctctttagcttgaaggcgtagggctaaggggaaggggtgaatagccctttgaacaaagatttttcaggtccacacttgaaaccaaggggtaaaaaaatttcccagaatacacctgccacagctgcacccagaagtaaggagaattttttttatttttatttatttatttttttttttatgacaaacaaacatgtttcaatatattcataaccacgttcatgttttattgtcatagttttttttttttacgctataatttgcaatctataatccataataataactcctttgcagcagtcccacaacattctgacacttgatgacactggaataccctgccAGAAAAGTATAGTGTCTGTGATGAgctgtttacagtgtctgctatgatGTTAGTGtggttttcgtgtgtttacatagatgaatatggccactgtgtgtatatatactgtacagttacaatcttattgccacattagatcattatgataacatgatgtgccttcagtgatttcctcaagataaatatcaaaaaataacacaactgaaataactacagcagttgcgatcatctgatctcatacgAAGCATAAAATCACGATGGCAtatgctgtcccaattcttatggGTACATCTGAAGCCCTTCCCTTTAACTTTTGGTTGTAGGGGCagaggggaaggggtaggggtacaaaaatagaattgggattgggcctaaatcagttttcattttttggttgaactttaAGGGGCAGGACCCTTAAAAATGCTGTCATTAAGCTGTTTTTTAAAGCTTTGTTGAATAAATGCATTTGAGACAGTG
>TCONS_00024206
AGTAAAGCAACTACGAAAGAGAACTATTTGTGCATCTTAAAGCATCGATGCTTCACAAAAGGATGGATAACTGGTATGCCGTAATGATGGTCACAGAAATCCTAAATGAAGGCAGTAGTTCTGTTTCTGTTTACTACAAGGGATATCTTTCCAAATAAGGAAATTACCCACAACTATGGTGATTCTTCTTGGCCATGGCATTCAAGGGAATTGCATGAAGCATCATTGGTGACTGAGATTGATTGCAGTGTGAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACGTCAGGGAAGGAGAAAGAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTTCGAAAACTTCTAAATCAGGGAAAGAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGAGCGAAAACTTCCAAGTCAGGGAAAGAGACAGTA
>TCONS_00024207
CAGTTATGTAAAAAGTCATCATTGGCAATGATTGAATGTGGTTCGAAAAATTTCTACATCAGGGAAGGAGAAAAAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTGCGAAAACTTCTACATCTGGGAAAGAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGGGCGAAAACTTCCAAGTCAGGGAAAGAGACAGAATTATGTGAAGAGTCATCAATGGCGAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATTTCGCCATGAAGTACACAGTGCTGTTATTTCCAGTTTGCATTCTTGCGATGATTGTAGTGGTCCTATGTTAAGTAGAAAATGAAGACTTCAACTTGCAAATACACCAAATCAAGGAAAGTTATGATAAAATTATGGAGCACACTGAAGTGGATGCAGTCATGGAACATTTTAAAAGGACACCTCACCACAAAAGCAGAGCGTGATCAATGCAAGATAGCAGAAGacaaagtttttttccctctccgctgtcgcgaCCAGCTTGCATGgcttgggatcggtagagctacacatcgatgaatttgctctttagtgtttgaactctcagtaatgatttaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtaaagctgctttgacaccatttacattgtaaaagcgctatacaaataaagct

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024973 False 2600 lncRNA 0.38 7 41382228 41403179
TCONS_00024205 False 2819 lncRNA 0.38 9 41382228 41404908
TCONS_00024974 False 2513 lncRNA 0.38 6 41382228 41420249
TCONS_00024206 False 499 lncRNA 0.39 6 41397833 41428926
TCONS_00024207 True 762 lncRNA 0.40 6 41407238 41420272

Neighbor

gene id symbol gene type direction distance location
XLOC_012301 NA coding downstream 65412 41314405 ~ 41316816 (-)
XLOC_012300 rbks coding downstream 300422 40999835 ~ 41081806 (-)
XLOC_012299 si:dkey-16j16.4 coding downstream 426193 40912071 ~ 40956035 (-)
XLOC_012298 NA coding downstream 478828 40898975 ~ 40903400 (-)
XLOC_012297 supt7l coding downstream 503120 40860016 ~ 40879108 (-)
XLOC_012303 ralgapa2 coding upstream 46680 41475606 ~ 41798856 (-)
XLOC_012304 NA coding upstream 663408 42092334 ~ 42092836 (-)
XLOC_012305 nkx2.4a coding upstream 666321 42095247 ~ 42097267 (-)
XLOC_012306 NA coding upstream 738261 42167187 ~ 42176988 (-)
XLOC_012307 nkx2.2a coding upstream 779697 42208623 ~ 42218652 (-)
XLOC_012296 NA non-coding downstream 642287 40729231 ~ 40739941 (-)
XLOC_012295 NA non-coding downstream 662845 40718915 ~ 40719383 (-)
XLOC_012294 NA non-coding downstream 664120 40716916 ~ 40718108 (-)
XLOC_012308 NA non-coding upstream 832919 42261845 ~ 42272598 (-)
XLOC_012310 NA non-coding upstream 1111928 42540854 ~ 42564152 (-)
XLOC_012319 NA non-coding upstream 1821332 43250258 ~ 43251920 (-)

Expression


Co-expression Network