XLOC_012301


Basic Information

Item Value
gene id XLOC_012301
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 41314405 ~ 41316816 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024970
AGTCCCACTCTCTAATAATGCTGGGTACACACTAAAAGATGATTTTATTGAAATCTTATAAGAGACCACACACACAAGGACAAAAAAAATCCAGCCCAATCTTATGAGGAAACGTAACGTATTATCAGAAAAGTGTCTAATTCATACGGAATTGATCTTGCGTATGATTTTTAAAGGGATGTGTGCCCCCAATCCACACCTAAACCTAAATGAGAAAGTTGTACTAAGAACTAATGAGATCATACAAAGAAATAATaactagccactaaatcaaaaaagttacaaattgacCCAAGTTACGAACATTTTTAGATTGACCCGTTTTGTTTGTATTGTGAGGTGAGCCGTGAGACAGCACACCATACACCAACAGATCTTCGACTATTCAAATCTTGCAGAATCTctacaaataactaaataaacattgACATCATTTATCGACGTAAATCTACAAGCTGATCTTCCACTTTGTCAAAAatttatgaattgccatgagattgttgaaaatgtttagatttcacCGTTTTGTTCGCATAGTGTGTGGAGTGCCGTGAGACCGCACACTATACATCAACAGATCGTTCATTTTTCTAATCATGCAGCGTCTCTTGAGACTATAGAACAAAATTCAACATTTATCGACATAAATCTACAAGCTGATCTTCCACTAATTCAAAACGTTACGAATTGACCCAAATTATGAACATTTTTAGATTTCACCATTTTGTTTGCATGGTGTATAGTGTGCTGTCTCGCTGCACGCCACACACTAACAGATCAATATATTTTCAAGTCATGCAGCATCtccaaatcaaaaagttatgaattgctatgagattgtgttgaaaatgtTTAGCTTTCACTGTTTTGTTCGCATAGTGTGTGGCATGTCgtgagcaaagagcatagaatcgccaagaggcgacactctagtgcgatttgggaaacagccactagatgctgCTAGTGTCACGcagtggccattttggaatgaaaactctaaTAGAACAACAGCAACGTCTTTAAACTATTTAAAGTGCTAATGATTGTGATGGTAAGTGTTGTATTttcatctttcaggttgtatctcagcttttaatgcactttttaaaacaaataaataactaaaaaacaaagcagctgcttgccatcgcaacagcaataagatccaatggacggccgatcactttcactccaaaatggtggaattGCAAGGCTGTTGCAATGGAAAGTTCTAtcgagtgtcgcctcttggtgattctaagctcaccagacagcacaccacacaccaacAGATCGTTATTTTTTCAAATCTCTTGAGATTAGAGAACAAACATGATGGACAAATAACTGCATAAACATCATCATTTATCGGCATAAATCTACAAGCTGATCTTCCATTTCTGCTGTGCAAATCGGGTTTTTTTTGTGCTCCGCCATGACTGTGCTTATTTATTATACTGCCCTCTTCTGCCAGCTTGCTTTCTGATTGgatattgttttgtttcatgtgATGATCTCCAGTTCGTATGTGCGTTTCTCCTCAGGGTTACTTCCACACATCGGGATTTTGATTGTAAATATTATATGATTCCCAATCGGAGATGTTCTTCTGTGCAGATTAAGTCTTAATACACCTCACACCACAGGAAATTTTAAGATATACTTTTGAACCATCGAGATAAGATGTTACTTTAGATTGTCAAAAAGGGGAGAAATGGGCCCAAAATCATCCTGATtaccagtgtgtgtgtatgtgtgtgtgtacccaGCATTATCAAgctagtaaaacaaataaatttttgaTCTTTTAAATCAAACATCTGACCGCAACCTGCTCTGAGTCTTATGCTAAAGATGAAAGATGCGATCTCTCCTCTGGC
>TCONS_00024971
TGATGATGTTTTTAGGGCAGCTATCTATGCTAGTGTCCTGATTCTGTACCTATTGAGACTTTTTCAAGCAGTCCCACTCTCTAATAATGCTGGGTACACACTAAAAGATGATTTTATTGAAATCTTATAAGAGACCACACACACAAGGACAAAAAAAATCCAGCCCAATCTTATGAGGAAACGTAACGTATTATCAGAAAAGTGTCTAATTCATACGGAATTGATCTTGCGTATGATTTTTAAAGGGATGTGTGCCCCCAATCCACACCTAAACCTAAATGAGAAAGTTGTACTAAGAACTAATGAGATCATACAAAGAAATAATaactagccactaaatcaaaaaagttacaaattgacCCAAGTTACGAACATTTTTAGATTGACCCGTTTTGTTTGTATTGTGAGGTGAGCCGTGAGACAGCACACCATACACCAACAGATCTTCGACTATTCAAATCTTGCAGAATCTctacaaataactaaataaacattgACATCATTTATCGACGTAAATCTACAAGCTGATCTTCCACTTTGTCAAAAatttatgaattgccatgagattgttgaaaatgtttagatttcacCGTTTTGTTCGCATAGTGTGTGGAGTGCCGTGAGACCGCACACTATACATCAACAGATCGTTCATTTTTCTAATCATGCAGCGTCTCTTGAGACTATAGAACAAAATTCAACATTTATCGACATAAATCTACAAGCTGATCTTCCACTAATTCAAAACGTTACGAATTGACCCAAATTATGAACATTTTTAGATTTCACTATTTTGTTCGTAtagtgtgtgtggtgtgcagtgaGACAGCACACTATACACCAACAGATATACAACTGTTCAAATCTTGCAGAATCTCTTGAGACTAGAAAACAAACATGGCGGACAAATAACTGATTAAACATCGACAGATCGTTAATTTTTCAAATCTTGCAGAATTTCTTGAGGCTATAGAACAAACATGGTGGACAAATAACTGAATAAACATCGACATCATTTATCAACATAAATCTACAAGCTGATCTTCCACTAAATCAAAGTTACAAATTGACCCAAGTTACGAACATTTTTAGATTTCACCATTTTGTTTGCATGGTGTATAGTGTGCTGTCTCGCTGCACGCCACACACTAACAGATCAATATATTTTCAAGTCATGCAGCATCtccaaatcaaaaagttatgaattgctatgagattgtgttgaaaatgtTTAGCTTTCACTGTTTTGTTCGCATAGTGTGTGGCATGTCgtgagcaaagagcatagaatcgccaagaggcgacactctagtgcgatttgggaaacagccactagatgctgCTAGTGTCACGcagtggccattttggaatgaaaactctaaTAGAACAACAGCAACGTCTTTAAACTATTTAAAGTGCTAATGATTGTGATGGTAAGTGTTGTATTttcatctttcaggttgtatctcagcttttaatgcactttttaaaacaaataaataactaaaaaacaaagcagctgcttgccatcgcaacagcaataagatccaatggacggccgatcactttcactccaaaatggtggaattGCAAGGCTGTTGCAATGGAAAGTTCTAtcgagtgtcgcctcttggtgattctaagctcaccagacagcacaccacacaccaacAGATCGTTATTTTTTCAAATCTCTTGAGATTAGAGAACAAACATGATGGACAAATAACTGCATAAACATCATCATTTATCGGCATAAATCTACAAGCTGATCTTCCATTTCTGCTGTGCAAATCGGGTTTTTTTTGTGCTCCGCCATGACTGTGCTTATTTATTATACTGCCCTCTTCTGCCAGCTTGCTTTCTGATTGgatattgttttgtttcatgtgATGATCTCCAGTTCGTATGTGCGTTTCTCCTCAGGGTTACTTCCACACATCGGGATTTTGATTGTAAATATTATATGATTCCCAATCGGAGATGTTCTTCTGTGCAGATTAAGTCTTAATACACCTCACACCACAGGAAATTTTAAGATATACTTTTGAACCATCGAGATAAGATGTTACTTTAGATTGTCAAAAAGGGGAGAAATGGGCCCAAAATCATCCTGATtaccagtgtgtgtgtatgtgtgtgtgtacccaGCATTATCAAgctagtaaaacaaataaatttttgaTCTTTTAAATCAAACATCTGACCGCAACCTGCTCTGAGTCTTATGCTAAAGATGAAAGATGCGATCTCTCCTCTGGC
>TCONS_00024972
AAAAGGTGATGATGTTTTTAGGGCAGCTATCTATGCTAGTGTCCTGATTCTGTACCTATTGAGACTTTTTCAAGCAGTCCCACTCTCTAATAATGCTGGGTACACACTAAAAGATGATTTTATTGAAATCTTATAAGAGACCACACACACAAGGACAAAAAAAATCCAGCCCAATCTTATGAGGAAACGTAACGTATTATCAGAAAAGTGTCTAATTCATACGGAATTGATCTTGCGTATGATTTTTAAAGGGATGTGTGCCCCCAATCCACACCTAAACCTAAATGAGAAAGTTGTACTAAGAACTAATGAGATCATACAAAGAAATAATaactagccactaaatcaaaaaagttacaaattgacCCAAGTTACGAACATTTTTAGATTGACCCGTTTTGTTTGTATTGTGAGGTGAGCCGTGAGACAGCACACCATACACCAACAGATCTTCGACTATTCAAATCTTGCAGAATCTctacaaataactaaataaacattgACATCATTTATCGACGTAAATCTACAAGCTGATCTTCCACTTTGTCAAAAatttatgaattgccatgagattgttgaaaatgtttagatttcacCGTTTTGTTCGCATAGTGTGTGGAGTGCCGTGAGACCGCACACTATACATCAACAGATCGTTCATTTTTCTAATCATGCAGCGTCTCTTGAGACTATAGAACAAAATTCAACATTTATCGACATAAATCTACAAGCTGATCTTCCACTAATTCAAAACGTTACGAATTGACCCAAATTATGAACATTTTTAGATTTCACTATTTTGTTCGTAtagtgtgtgtggtgtgcagtgaGACAGCACACTATACACCAACAGATATACAACTGTTCAAATCTTGCAGAATCTCTTGAGACTAGAAAACAAACATGGTGGACAAATAACTGAATAAACATCGACATCATTTATCAACATAAATCTACAAGCTGATCTTCCACTAAATCAAAGTTACAAATTGACCCAAGTTACGAACATTTTTAGATTTCACCATTTTGTTTGCATGGTGTATAGTGTGCTGTCTCGCTGCACGCCACACACTAACAGATCAATATATTTTCAAGTCATGCAGCATCtccaaatcaaaaagttatgaattgctatgagattgtgttgaaaatgtTTAGCTTTCACTGTTTTGTTCGCATAGTGTGTGGCATGTCgtgagcaaagagcatagaatcgccaagaggcgacactctagtgcgatttgggaaacagccactagatgctgCTAGTGTCACGcagtggccattttggaatgaaaactctaaTAGAACAACAGCAACGTCTTTAAACTATTTAAAGTGCTAATGATTGTGATGGTAAGTGTTGTATTttcatctttcaggttgtatctcagcttttaatgcactttttaaaacaaataaataactaaaaaacaaagcagctgcttgccatcgcaacagcaataagatccaatggacggccgatcactttcactccaaaatggtggaattGCAAGGCTGTTGCAATGGAAAGTTCTAtcgagtgtcgcctcttggtgattctaagctcaccagacagcacaccacacaccaacAGATCGTTATTTTTTCAAATCTCTTGAGATTAGAGAACAAACATGATGGACAAATAACTGCATAAACATCATCATTTATCGGCATAAATCTACAAGCTGATCTTCCATTTCTGCTGTGCAAATCGGGTTTTTTTTGTGCTCCGCCATGACTGTGCTTATTTATTATACTGCCCTCTTCTGCCAGCTTGCTTTCTGATTGgatattgttttgtttcatgtgATGATCTCCAGTTCGTATGTGCGTTTCTCCTCAGGGTTACTTCCACACATCGGGATTTTGATTGTAAATATTATATGATTCCCAATCGGAGATGTTCTTCTGTGCAGATTAAGTCTTAATACACCTCACACCACAGGAAATTTTAAGATATACTTTTGAACCATCGAGATAAGATGTTACTTTAGATTGTCAAAAAGGGGAGAAATGGGCCCAAAATCATCCTGATtaccagtgtgtgtgtatgtgtgtgtgtacccaGCATTATCAAgctagtaaaacaaataaatttttgaTCTTTTAAATCAAACATCTGACCGCAACCTGCTCTGAGTCTTATGCTAAAGATGAAAGATGCGATCTCTCCTCTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024970 False 1883 lncRNA 0.37 2 41314405 41316741
TCONS_00024971 False 2262 lncRNA 0.37 2 41314405 41316810
TCONS_00024972 True 2185 lncRNA 0.37 2 41314405 41316816

Neighbor

gene id symbol gene type direction distance location
XLOC_012300 rbks coding downstream 232599 40999835 ~ 41081806 (-)
XLOC_012299 si:dkey-16j16.4 coding downstream 358370 40912071 ~ 40956035 (-)
XLOC_012298 NA coding downstream 411005 40898975 ~ 40903400 (-)
XLOC_012297 supt7l coding downstream 435297 40860016 ~ 40879108 (-)
XLOC_012296 NA coding downstream 574464 40729231 ~ 40739941 (-)
XLOC_012302 NA coding upstream 65412 41382228 ~ 41428926 (-)
XLOC_012303 ralgapa2 coding upstream 158790 41475606 ~ 41798856 (-)
XLOC_012304 NA coding upstream 775518 42092334 ~ 42092836 (-)
XLOC_012305 nkx2.4a coding upstream 778431 42095247 ~ 42097267 (-)
XLOC_012306 NA coding upstream 850371 42167187 ~ 42176988 (-)
XLOC_012295 NA non-coding downstream 595022 40718915 ~ 40719383 (-)
XLOC_012294 NA non-coding downstream 596297 40716916 ~ 40718108 (-)
XLOC_012291 NA non-coding downstream 1292156 40009376 ~ 40022249 (-)
XLOC_012308 NA non-coding upstream 945029 42261845 ~ 42272598 (-)
XLOC_012310 NA non-coding upstream 1224038 42540854 ~ 42564152 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G299571 NA non-coding CI01000086 null 1893007 ~ 1893710 (-)