XLOC_012308


Basic Information

Item Value
gene id XLOC_012308
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42261845 ~ 42272598 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024548
CAAGGAAATTACACTTTGTGGTCATATTTTGTGTATACACAATGAGGAAAGCAGAGGGAAACGGCTATCAAAATTTGCTTCACTGGCACATTTGTGAAACCTCATACAGACGACGAACTCACTTCCCCGGAGTCTTGCACGGGATATCCAGCTCTTTTATGCTGTGGTAGGTGAAACAACAGCTGGCATGTAAAAGAGGACATATGCATGACACAACGCTCTACATATGGCAAAACTTGATGCTTTTCAACATGTTGACTTTCATATTCTACTGGAAATTCCTAATTCAGCGATTTTGTTGAGCAAATAAATGATACAAATTTATCTACACAAGGGGAATTCCACCATTTGCAAGGCAGATGACACAAAACTATTTATCAAAAGGCTAAATGGGGGGAAACTCTCCACTGGAGAACATGCTTCTTTTGAGTGAAGACAGAAAGAGACAGAAACCAGCCTGGACTTGTTCATTTGAAACTGATCTTTTGGTACAGTAGCCCCTCTCATAGCTGCATCTATTTGTACTCAAAGATTTACACTGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024548 True 544 lncRNA 0.40 2 42261845 42272598

Neighbor

gene id symbol gene type direction distance location
XLOC_012307 nkx2.2a coding downstream 43193 42208623 ~ 42218652 (-)
XLOC_012306 NA coding downstream 84857 42167187 ~ 42176988 (-)
XLOC_012305 nkx2.4a coding downstream 164578 42095247 ~ 42097267 (-)
XLOC_012304 NA coding downstream 169009 42092334 ~ 42092836 (-)
XLOC_012303 ralgapa2 coding downstream 462989 41475606 ~ 41798856 (-)
XLOC_012309 CR925755.2 coding upstream 214142 42486740 ~ 42492668 (-)
XLOC_012310 NA coding upstream 268256 42540854 ~ 42564152 (-)
XLOC_012311 foxa2 coding upstream 293400 42565998 ~ 42568498 (-)
XLOC_012312 prkd3 coding upstream 337496 42610094 ~ 42799104 (-)
XLOC_012313 mocs3 coding upstream 539667 42812265 ~ 42842863 (-)
XLOC_012302 NA non-coding downstream 832919 41382228 ~ 41428926 (-)
XLOC_012301 NA non-coding downstream 945029 41314405 ~ 41316816 (-)
XLOC_012298 NA non-coding downstream 1358445 40898975 ~ 40903400 (-)
XLOC_012319 NA non-coding upstream 977660 43250258 ~ 43251920 (-)
XLOC_012328 NA non-coding upstream 1369219 43641817 ~ 43649494 (-)
XLOC_012330 FO704797.1 non-coding upstream 1435801 43708399 ~ 43718395 (-)
XLOC_012332 NA non-coding upstream 1731841 44004439 ~ 44010882 (-)

Expression


Co-expression Network