XLOC_012314 (zgc:92137)


Basic Information

Item Value
gene id XLOC_012314
gene name zgc:92137
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42983983 ~ 42988356 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024225
CGATGGTGGGTGTCGCTCAGGGTTGCagtataaataacatttaacagATCATGCAGCCACACAAATCCTCAAATTGTGGTCTGGCACAATGATGCTCCTGATTCTGGTGGCCATCTTTGGGCTGGGTTTGGCCCAGCACAACCCAAACACGAAAAATGGTAGAACGTCCATTGTTCATCTGTTTGAGTGGCGTTGGGCAGACATAGCTGAAGAATGCGAGAGATATCTGGCACCAAACGGCTATGGAGGAGTTCAGATCTCTCCCCCAAGTGAACACGTCAAGCTGACCAATCCTTGGCATCCTTGGTGGCAGAGATATCAACCAATCAGCTATAACCTGTGCTCCAGATCAGGAACTGAAGCAGAACTTAAAGACATGATCACACGCTGTAACAATGTTGGGGTGAACATTTACGCTGATGTGGTCATCAATCACATGTGTAAATCAATTCATGGAGCTGGAACTCCTTCAAGCTGTGGATCACATTTTGACGCCAATAAGGAAGACTTCCCCACTGTTCCCTACTCATATCTGGACTTCAATGATGGCAAATGTAAATCTGCCAGCGGGCAAATTGAAAGCTACAACGATATTTACCAGGTCAGAGATTGCCGTTTGGAAGACCTCCTGGATTTGGCCCTGGAGAAGGACTATGTTAGAGGAAAGGTGGCTGAatacctgaacaagctgattGAATTGGGTGTTGCTGGATTCAGAGTAGATGCTTGTAAGCACATGTGGCCTGGAGATCTCAGTAACGTCTACAGCAGGCTCAAGACCCTGAATACCAAATGGTTTCCATCTGGTACTAAACCCTTCATTTATCAAGAGGTTATTGATTTAGGTGGGGAGCCCATTAAAGCCAGCGAGTACTACGGGCTGGCAAGAGTGACAGAGTTTAAACACAGTGCGAAAATAGGCACAGCGGTCCGTAAATGGGATGGAGAGAAGCTAAGCTATCTGAAGAACTGGGGAGAGGGCTGGGGTTTCATGCCCTCTGATAAAGCTTTGGTTTTTGTGGACAATCATGATAATCAAAGGGGCCATGGTGCTGGTGGAGCTTCCGTTCTGACATTCTGGGACTCCagGCTTTATAAGATGGCAGCAGGATTCATGTTGGCTCATCCATACGGTGTGACAAGAGTAATGTCTAGTTACCAATGGGATCGTAAAATTGTGAATGGAAAGGATGAGAATGACTGGATGGGACCTCCAAGCTTTTCTGATGGATCCACTAAGCCTGTACCCATCAACCCAGACTCCACCTGTGGCGACGGCTGGGTATGTGAGCACAGATGGCGCCAGATTAGAAATATGGTGATTTTCCGTAATGTAGTCAACGGTCAGCCCCTCTTCAACTGGTGGGACAACGGTAATAGTCAGATTGCCTTTAGCCGTGGCAGCAAGGGATTTATTGTCATCAATAATGATAATTGGGAACTGAATGCGACACTGAACACTGGCCTGCAGTCAGGCACGTACTGTGACATCATCTCTGGAGAAAAGAGTGGGAACAGTTGCACAGGGAAACAGGTGTCAGTGGATTCTGATGGAAAAGCCACCTTCAGCATCAGCCACACAGAAGAAGATCCATTCATGGCCATCCATGCTGACTCAAAACTGTAGATTCAGTCACAATGAATTATAATAAAGCAACTGAAAATGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0103025 alpha-amylase activity (releasing maltohexaose) molecular_function
GO:0004556 alpha-amylase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-179 Predicted to enable alpha-amylase activity; alpha-amylase activity (releasing maltohexaose); and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process.

Ensembl:

ensembl_id ENSDARG00000009443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024225 True 1667 mRNA 0.47 10 42983983 42988356

Neighbor

gene id symbol gene type direction distance location
XLOC_012313 mocs3 coding downstream 141120 42812265 ~ 42842863 (-)
XLOC_012312 prkd3 coding downstream 184879 42610094 ~ 42799104 (-)
XLOC_012311 foxa2 coding downstream 415485 42565998 ~ 42568498 (-)
XLOC_012310 NA coding downstream 419831 42540854 ~ 42564152 (-)
XLOC_012309 CR925755.2 coding downstream 491315 42486740 ~ 42492668 (-)
XLOC_012315 atg2b coding upstream 17072 43005428 ~ 43012390 (-)
XLOC_012316 NPC2 coding upstream 33306 43021662 ~ 43022468 (-)
XLOC_012317 npc2 coding upstream 41961 43030317 ~ 43031828 (-)
XLOC_012318 EML5 coding upstream 51107 43039463 ~ 43287290 (-)
XLOC_012319 NA coding upstream 261902 43250258 ~ 43251920 (-)
XLOC_012308 NA non-coding downstream 711385 42261845 ~ 42272598 (-)
XLOC_012306 NA non-coding downstream 806995 42167187 ~ 42176988 (-)
XLOC_012304 NA non-coding downstream 891147 42092334 ~ 42092836 (-)
XLOC_012302 NA non-coding downstream 1555057 41382228 ~ 41428926 (-)
XLOC_012328 NA non-coding upstream 653461 43641817 ~ 43649494 (-)
XLOC_012330 FO704797.1 non-coding upstream 720043 43708399 ~ 43718395 (-)
XLOC_012332 NA non-coding upstream 1016083 44004439 ~ 44010882 (-)
XLOC_012333 BX511267.1 non-coding upstream 1070455 44058811 ~ 44058927 (-)

Expression


Co-expression Network