Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00024224 |
| length | 777 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 7 |
| gene id | XLOC_012313 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 42812265 ~ 42842863 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0034227 | tRNA thio-modification | biological_process |
| GO:0018192 | enzyme active site formation via cysteine modification to L-cysteine persulfide | biological_process |
| GO:0002098 | tRNA wobble uridine modification | biological_process |
| GO:0032447 | protein urmylation | biological_process |
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | biological_process |
| GO:0002143 | tRNA wobble position uridine thiolation | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004792 | thiosulfate sulfurtransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016779 | nucleotidyltransferase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0042292 | URM1 activating enzyme activity | molecular_function |
| GO:0008641 | ubiquitin-like modifier activating enzyme activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0061604 | molybdopterin-synthase sulfurtransferase activity | molecular_function |
| id | description |
|---|---|
| ko04122 | Sulfur relay system |
| ko03016 | Transfer RNA biogenesis |
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-040426-782 | Predicted to enable URM1 activating enzyme activity; nucleotidyltransferase activity; and thiosulfate sulfurtransferase activity. Predicted to be involved in Mo-molybdopterin cofactor biosynthetic process; protein urmylation; and tRNA wobble position uridine thiolation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human MOCS3 (molybdenum cofactor synthesis 3). |
| ensembl_id | ENSDART00000144258 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024977 | lncRNA | downstream | 261139 | 42540854 ~ 42564152 (-) | False | XLOC_012310 |
| TCONS_00024549 | lncRNA | downstream | 261139 | 42545940 ~ 42564152 (-) | False | XLOC_012310 |
| TCONS_00024219 | lncRNA | downstream | 261157 | 42561960 ~ 42564134 (-) | True | XLOC_012310 |
| TCONS_00024976 | lncRNA | downstream | 261177 | 42540854 ~ 42564114 (-) | False | XLOC_012310 |
| TCONS_00024548 | lncRNA | downstream | 552693 | 42261845 ~ 42272598 (-) | True | XLOC_012308 |
| TCONS_00024229 | lncRNA | upstream | 187671 | 43030534 ~ 43031824 (-) | False | XLOC_012317 |
| TCONS_00024232 | lncRNA | upstream | 197467 | 43040330 ~ 43044513 (-) | False | XLOC_012318 |
| TCONS_00024978 | lncRNA | upstream | 407395 | 43250258 ~ 43251920 (-) | True | XLOC_012319 |
| TCONS_00024237 | lncRNA | upstream | 523131 | 43365994 ~ 43399919 (-) | True | XLOC_012320 |
| TCONS_00024242 | lncRNA | upstream | 682391 | 43525254 ~ 43532894 (-) | True | XLOC_012324 |
| TCONS_00024222 | mRNA | downstream | 26187 | 42613760 ~ 42799104 (-) | True | XLOC_012312 |
| TCONS_00024221 | mRNA | downstream | 26959 | 42610094 ~ 42798332 (-) | False | XLOC_012312 |
| TCONS_00024220 | mRNA | downstream | 256793 | 42565998 ~ 42568498 (-) | True | XLOC_012311 |
| TCONS_00024218 | mRNA | downstream | 332623 | 42486740 ~ 42492668 (-) | True | XLOC_012309 |
| TCONS_00024217 | mRNA | downstream | 606639 | 42210944 ~ 42218652 (-) | True | XLOC_012307 |
| TCONS_00024225 | mRNA | upstream | 141120 | 42983983 ~ 42988356 (-) | True | XLOC_012314 |
| TCONS_00024226 | mRNA | upstream | 162565 | 43005428 ~ 43012390 (-) | True | XLOC_012315 |
| TCONS_00024227 | mRNA | upstream | 178799 | 43021662 ~ 43022468 (-) | True | XLOC_012316 |
| TCONS_00024228 | mRNA | upstream | 187454 | 43030317 ~ 43031828 (-) | False | XLOC_012317 |
| TCONS_00024230 | mRNA | upstream | 187824 | 43030687 ~ 43031763 (-) | True | XLOC_012317 |
| TCONS_00024191 | other | downstream | 3183493 | 39641681 ~ 39641798 (-) | True | XLOC_012284 |
| TCONS_00024190 | other | downstream | 3293362 | 39531815 ~ 39531929 (-) | True | XLOC_012283 |
| TCONS_00024189 | other | downstream | 3675608 | 39149567 ~ 39149683 (-) | True | XLOC_012281 |
| TCONS_00024188 | other | downstream | 3837876 | 38987296 ~ 38987415 (-) | True | XLOC_012280 |
| TCONS_00024174 | other | downstream | 5435174 | 37390003 ~ 37390117 (-) | True | XLOC_012269 |
| TCONS_00024257 | other | upstream | 1007899 | 43850762 ~ 43863624 (-) | True | XLOC_012331 |
| TCONS_00024261 | other | upstream | 1215948 | 44058811 ~ 44058927 (-) | True | XLOC_012333 |
| TCONS_00024269 | other | upstream | 1640627 | 44483490 ~ 44483617 (-) | False | XLOC_012339 |
| TCONS_00024283 | other | upstream | 2297466 | 45140329 ~ 45151793 (-) | False | XLOC_012349 |
| TCONS_00024305 | other | upstream | 3827144 | 46670007 ~ 46670103 (-) | True | XLOC_012361 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU512020 | True | 335 | lncRNA | 0.51 | 2 | CI01000314 | 1048022 ~ 1048459 (+) |
