RNA id: TCONS_00024219


Basic Information

Item Value
RNA id TCONS_00024219
length 718
lncRNA type lincRNA
GC content 0.38
exon number 2
gene id XLOC_012310
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42540854 ~ 42564152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGGCAGCGGGAGAGACAACGAATACCGTCCTACGGGCATCAGACAAAAATTCGAAAACAACTTTGAATATTGCACGAGAAGATGGCATCAGAACACCTCCGTGTCATCTAAATGGTCTGTGCTCAGTGCTGGAACACCCAAGTGGAGCTGGTCTCCCGGGAGATCTGCGGGACACCCATCTTACAAGCTGTAATGCCGCTTTAACCCATTGCTGGGGAGGGACCGTTCACACTACCCCGATTTAAGACCAAATACTCCTAATCCCGCTGATGTCCCACACTATATTAACGCACAACACAGACGCTTAATCTACGCCCTAAAGTTAGAAAGGCAGTTTCACTGCAATATGCCGAATAGGATTAGGTTAGTCTTTGTAATAGTCTTTAAGGCATTTTAAACGCCGGGCAATGCGATTACATGTAAAAGTATTATATTCTCCCCCAAAACAGATAAAAAAGTTCATacaacaataacaattatactaactatttaaatcaaaatatagTTGTATGCTgggattaaattattattatttgtaattgtaaaaaatgtttaaatcattcactcttgcttgttttgtttagtttaaatgtttttggaaTACTTCCATATTTATCTATTGGTCATTTTATGACAATGTCAGAACACATTTTATCGCCTAAAGATGACCTTGAACTTGTTGTGTATATTTgaagaaataaaaatgtgaaaaag

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0042330 taxis biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-LINCRNAG-131121-325 Acts upstream of or within with a positive effect on heart development and vasculature development.

Ensembl:

ensembl_id ENSDART00000154423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024548 lncRNA downstream 289362 42261845 ~ 42272598 (-) True XLOC_012308
TCONS_00024547 lncRNA downstream 384972 42167187 ~ 42176988 (-) True XLOC_012306
TCONS_00024975 lncRNA downstream 469124 42092334 ~ 42092836 (-) True XLOC_012304
TCONS_00024206 lncRNA downstream 1133034 41397833 ~ 41428926 (-) False XLOC_012302
TCONS_00024229 lncRNA upstream 466400 43030534 ~ 43031824 (-) False XLOC_012317
TCONS_00024232 lncRNA upstream 476196 43040330 ~ 43044513 (-) False XLOC_012318
TCONS_00024978 lncRNA upstream 686124 43250258 ~ 43251920 (-) True XLOC_012319
TCONS_00024237 lncRNA upstream 801860 43365994 ~ 43399919 (-) True XLOC_012320
TCONS_00024242 lncRNA upstream 961120 43525254 ~ 43532894 (-) True XLOC_012324
TCONS_00024218 mRNA downstream 69292 42486740 ~ 42492668 (-) True XLOC_012309
TCONS_00024217 mRNA downstream 343308 42210944 ~ 42218652 (-) True XLOC_012307
TCONS_00024216 mRNA downstream 348138 42208623 ~ 42213822 (-) False XLOC_012307
TCONS_00024215 mRNA downstream 348138 42208623 ~ 42213822 (-) False XLOC_012307
TCONS_00024214 mRNA downstream 464693 42095554 ~ 42097267 (-) True XLOC_012305
TCONS_00024220 mRNA upstream 1864 42565998 ~ 42568498 (-) True XLOC_012311
TCONS_00024221 mRNA upstream 45960 42610094 ~ 42798332 (-) False XLOC_012312
TCONS_00024222 mRNA upstream 49626 42613760 ~ 42799104 (-) True XLOC_012312
TCONS_00024223 mRNA upstream 248131 42812265 ~ 42842129 (-) False XLOC_012313
TCONS_00024225 mRNA upstream 419849 42983983 ~ 42988356 (-) True XLOC_012314
TCONS_00024191 other downstream 2920162 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 3030031 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 3412277 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 3574545 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 5171843 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 261157 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 1286628 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 1494677 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 1919356 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 2576195 45140329 ~ 45151793 (-) False XLOC_012349

Expression Profile

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