G446056


Basic Information

Item Value
gene id G446056
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1048022 ~ 1048459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU512020
CTGTCCTTCCATTCGTAAAGCACTCGCTGACACTAAAGGCTTGCGGGTCAGAACACAGGCATCATTCACGAGGTACCGTGTAGGAACGTTGTCCGAACAGTCTGCCACAATGTCATACTGTTGAATGAGTTGTATGGCGTTCTCTCTGGAGAGCTGAAGGTGATACGGAACACACTGAACCGTGGAGTTCAACCTGGAAGAGATCACAAGCCATCAACTCTCAGTTGTTCACACCTCTCCTTGTTTTGTGAGGTAAGATGGTACCTGCTGATGGCCTGGGCGGCAGACAGGGCTTTAGGCTGACCTTGAGTCAGTTCTGAGTGAAGCACCTGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU512020 True 335 lncRNA 0.51 2 1048022 1048459

Neighbor

gene id symbol gene type direction distance location
CI01000314_00753601_00757013 PAX1A, PAX1 coding upstream 290770 753513 ~ 757252 (+)
CI01000314_00668853_00684135 NA coding upstream 363617 666915 ~ 684405 (+)
CI01000314_00603636_00621698 KIZ coding upstream 426324 603636 ~ 621698 (+)
CI01000314_00447606_00452346 NA coding upstream 595661 447464 ~ 452361 (+)
CI01000314_00340354_00340595 NA coding upstream 707403 340228 ~ 340619 (+)
CI01000314_01059252_01065169 QPCT coding downstream 10793 1059252 ~ 1065807 (+)
CI01000314_01096672_01145574 CNKSR3 coding downstream 48213 1096672 ~ 1145596 (+)
CI01000314_01238763_01250499 NA coding downstream 190162 1238621 ~ 1251081 (+)
CI01000314_01334065_01347608 SCAF8 coding downstream 285606 1334065 ~ 1348310 (+)
CI01000314_01398459_01474471 TIAM2A coding downstream 350000 1398459 ~ 1474471 (+)
G446018 NA non-coding upstream 88681 959130 ~ 959341 (+)
G446017 NA non-coding upstream 92327 955458 ~ 955695 (+)
G446013 NA non-coding upstream 103136 944663 ~ 944886 (+)
G446010 NA non-coding upstream 106449 941350 ~ 941573 (+)
G445989 NA non-coding upstream 135188 912563 ~ 912834 (+)
G446071 NA non-coding downstream 18753 1067212 ~ 1067514 (+)
G446087 NA non-coding downstream 150431 1198890 ~ 1199211 (+)
G446088 NA non-coding downstream 150842 1199301 ~ 1199808 (+)
G446089 NA non-coding downstream 151739 1200198 ~ 1200669 (+)
G446166 NA non-coding downstream 155001 1203460 ~ 1203691 (+)
G445422 NA other upstream 735001 311532 ~ 313021 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012313 mocs3 coding NC_007128.7 CM002901.2 42812265 ~ 42842863 (-)
bowfin (Amia calva) G143759 NA non-coding CM030140.1 CM030140.1 6588151 ~ 6588746 (-)
tiger barb (Puntius tetrazona) G122402 NA non-coding NC_056715.1 CM032084.1 19657174 ~ 19659301 (+)