RNA id: TCONS_00024299


Basic Information

Item Value
RNA id TCONS_00024299
length 2312
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_012357
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45731865 ~ 45734459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTTCACGTTAGTAGTCGATTTGTTCTTGTGTTATTGCTAATGATATTGAAATAACTAATAATGCATTTCTTGCTAACTACCCTGAGCGTTGATACTAAATAAAATGCGTGCATTTGAAAGCGTTGACGTCGTCAGTTTCACACTGAACTCGGCTGAATTTAGGAGTGAACACCGGGTTGAGACTGCTAGAGAATGCTGGGCCTCCGCAGGGGCACGTGAGACAGTTCGAATTCGGGACGGTTGAAATTGATGCGGCTCCTCTTCGGACGGCCCAGATGACAGACTCGCAGCTCGGCCAAATGAACGCTTTTCCGCCGAGGCTTTAGACGTCTTCAGCTGCTATCCGGTTACATTTAGGGGGAAGGACGTGAGAGAACCCTCGAGACGGACATTCACACGCCAAGAGGAAGTCTTGAAAGACCGCAGGCTCTTAAAGAGGCCTCGccgcactgaacacacacacaggaaaagCCCCGAAATCGCTACTTTGTCGCAGTTTGGTGGATTATCATTATCGACTGTGGTGTTTTTCAAAGTATTAACACCCTAAAACCGAAGCAAAGTCGAACTTTGACCTTTACATTTGTGCGTGTTGTACTGAAAGTTTTCAGTACTGTCATTTATGCTAATCAGCAGTACAGTGGTGCTTATTGCTTGGAAATATATTCCCCATTCAGAAACATCACTTCCAAAATTGACATTCCTATAAACAAATCAAACTTTTAGTAACTCCTGCTACAAGGtttataattgtttttcttttggagGGAATTGACCATTTATGAACAGTTTACAAGATGGGGAAGATGCTGTCAAAGATATTCGGTAACAAAGAGATGAGAATATTGATGCTGGGTCTGGATGCGGCAGGGAAGACCACCATCCTTTATAAGTTGAAACTCGGCCAGTCTGTGACCACCATCCCCACTGTGGGTTTCAACGTAGAGACGGTCACCTACAAAAACGTCAAGTTCAACGTGTGGGACGTGGGCGGACAAGACAAGATCCGTCCCCTCTGGCGACATTATTACACAGGCACGCAGGGGTTAATTTTCGTGGTGGATTGCGCAGATAGAGATCGCATAGACGAGGCCAGGCAGGAACTCCACCGCATCATCAACGACCGAGAGATGCGGGACGCCATCATTTTGATTTTCGCCAACAAGCAAGACCTGCCGGACGCCATGAAGCCGCATGAGATCCAGGAGAAGCTGGGACTGACACGTATCCGGGATAGAAACTGGTACGTGCAGCCCTCATGTGCGACCACTGGAGATGGACTGTAcgaaggcttaacttggttaacaTCTAACTACAAGTCTTAATGACTCTGGCACTGACTGTTTAGGACAAATGAACTGGATATTGGAGCAAATCAGACCTCTCCAACGAATATATTCGTGCTGTTTTGATTTagagttaacatttatttttggtttgttttcaaACGGGCCTTTTTGAAGCGACGTAATGGGGTTGGCTTGCTTTCAGTTTCCTGTGTACTGTGACAGCTGTCACACACATCTCGGACTCTTGCTTAACAATGATAAAGCATTCCTAAATGAAgattctctattttttttttcctccctttCGTTGATTGATTGTAGGTTTTTCTATATTTGTTTTCTCTACTTCAGCTTCTTTGAGTCAAAAAAGTCTTGGAGTTTGTCTCCACCAAACAGTCCAACAGCGTGTTAAAGGCATTTTATACCGAAATGTATCGAGGCATCCACTGTAGCAAAGCACAGATTTGCTGAGGAGGTTGTAGCATACTAATTGTAGGTAGCTATGTGGTGTAACAGGTTTTGAACCGTGCCATAGTTATGATATCACTGACATCCAACGATAATCAACATGTAAATGAGTCCATGGAACATTTTATGCAAAAAGCCTAATCGTTGATGGCGGGCTTACCACAGACATAACTTGTATTCACAGAGCATAATCAAACTCAAAAGCTTGAAAATCCACAGGAAGTCCATGAGTGTTTGCATTGCGATGCCCAAAACCAGTTTAATGTTAAAGAGACTTCACTTTCAAACATCATGGGGATGCCTTTTGCAGCCCCTTTACCATTTTGGCTAATTGCATTGGCCTGATTGTCTTTGACACTCACACGTATGTCTCTCAAATGTGGGATTGTTACATTCAAGTGTAGTTGCTTGCAATAGAGTGGACTAAACTGTTCATTTTGGGGAGAAATGTTTCATTCTGTTCATTCCCTCTCTCTTTGCTTTAATCATTTTGAGAAACATCCATGTACAGAAACAGCTATGTAATTGTCAAATTAAACTTAGTCATTTTAA

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9056 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and intrahepatic bile duct development. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).

Ensembl:

ensembl_id ENSDART00000137807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024991 lncRNA downstream 246393 45484644 ~ 45485472 (-) True XLOC_012354
TCONS_00024990 lncRNA downstream 279051 45451574 ~ 45452814 (-) True XLOC_012353
TCONS_00024989 lncRNA downstream 279332 45449069 ~ 45452533 (-) False XLOC_012353
TCONS_00024988 lncRNA downstream 477350 45247083 ~ 45254515 (-) True XLOC_012350
TCONS_00024552 lncRNA downstream 757477 44966956 ~ 44974388 (-) True XLOC_012344
TCONS_00024302 lncRNA upstream 826681 46561140 ~ 46722470 (-) False XLOC_012359
TCONS_00024992 lncRNA upstream 903805 46638264 ~ 46638723 (-) True XLOC_012360
TCONS_00024993 lncRNA upstream 905565 46640024 ~ 46640650 (-) False XLOC_012359
TCONS_00024303 lncRNA upstream 905575 46640034 ~ 46640243 (-) False XLOC_012359
TCONS_00024304 lncRNA upstream 905575 46640034 ~ 46722470 (-) False XLOC_012359
TCONS_00024296 mRNA downstream 179234 45529453 ~ 45552631 (-) False XLOC_012356
TCONS_00024297 mRNA downstream 179263 45544812 ~ 45552602 (-) True XLOC_012356
TCONS_00024295 mRNA downstream 205929 45501378 ~ 45525936 (-) True XLOC_012355
TCONS_00024292 mRNA downstream 344731 45378908 ~ 45387134 (-) False XLOC_012352
TCONS_00024301 mRNA upstream 716912 46451371 ~ 46457622 (-) True XLOC_012358
TCONS_00024307 mRNA upstream 1081189 46815648 ~ 46817295 (-) True XLOC_012369
TCONS_00024310 mRNA upstream 1114200 46848659 ~ 46850299 (-) True XLOC_012373
TCONS_00024312 mRNA upstream 1197460 46931919 ~ 46933567 (-) True XLOC_012376
TCONS_00024314 mRNA upstream 1254654 46989113 ~ 46990003 (-) True XLOC_012378
TCONS_00024283 other downstream 580072 45140329 ~ 45151793 (-) False XLOC_012349
TCONS_00024269 other downstream 1248248 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024261 other downstream 1672938 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024257 other downstream 1868241 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024224 other downstream 2889002 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024305 other upstream 935548 46670007 ~ 46670103 (-) True XLOC_012361
TCONS_00024306 other upstream 1005747 46740206 ~ 46740303 (-) True XLOC_012364
TCONS_00024308 other upstream 1085289 46819748 ~ 46819845 (-) True XLOC_012370
TCONS_00024319 other upstream 1775821 47510280 ~ 47510396 (-) True XLOC_012384
TCONS_00024320 other upstream 2428492 48162951 ~ 48163065 (-) True XLOC_012385

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU513011 True 2418 lncRNA 0.42 2 CI01000315 1273277 ~ 1350388 (+)