CI01000299_01855614_01858092 (SLITRK6)


Basic Information

Item Value
gene id CI01000299_01855614_01858092
gene name SLITRK6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1855614 ~ 1858703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_01855614_01858092.mRNA
ATTCACAGAAGGGGGGAAAATGCTGGCCAGGATTATTTTCGTTTGCTCCTTCTTTGCTGGTGCTAGTCTTGAAGATACTGAGCCCAAGGTGCTGTACGATGGAGCTTGCAAATCTTTGTGCACCTGTGAGGAGAAAGATGGACAGTTGTACATCAACTGTGAGGAAAGAAACATAAGTAAAATGTCAGATGTTGAAGTACCATCAGATAAACCTTTTCATCTAAATTTATACAAAAATGACCTAGTGGAGTTACTTGCAGAGGATATAGATGCTTTCAAGAACGCCATCACTTTACATCTTGGTGCCAACAGCATACAGGAGCTTGAACCTGGCGTGTTCAGTGCGCTGGGATCCCTGAGGAAGTTGCACATAAACAGCAATTTCCTTGTCATGCTGAAGGAGGACACATTTCAAGGCTTGGTAAATTTGGAATACCTTCAGGCTGACACCAACTTCATCCGGGTCGTGGAGCCTGGGGCCTTCAGCAAGCTTGTCCGTCTTAAAGTTCTGATCCTCAATGACAACTCCATCGAGTTCCTTCCGAGCAACATTTTCCGCTTCGTGCCTCTGACACATTTGGATCTGCGTGGGAACAAGCTGCAGACACTGCCGTACGTGGGTTTCCTGGAGCATATTGGTCGTATCATGGAGCTCCTGTTGGAGGACAATGACTGGGTGTGTAATTGCGAAATCTTACATTTAAGGGTCTGGATTGAGAACATGCGAGCACAGTCATCCATTGGCGAGGTGGTTTGCAACTGGCCTGAAGATCTTAGGGGCACCAGTTTGGCTAGGGTCAAAAGGGATTTACTTTGCCCCTCTCATATTGACATCAACCTCGAAGAGCCATCGAAATCTCTAGACATGGTTGTCACCCCATCCACTAAGGTTGTTCAGATACCGAATGCCAAAGATGATGCAAAGATACCAACACCTGCAAACGGCCTAGGGACGTTTTGCGTGTCAATGTGCTCTTGTGACAAAATGGGTTTTTTAATGCAATGTGAGGACAAAGGCATTCAAAGGATATCTGATCTGGGCATTCTTGAACGAAGCCCAACTATGCTGGTTTTGACAGGAAATATGATACAAAGACTTTTCAAATATGACTTTGTGACGTACGACAGTTTGGAATTGCTCAATTTGGCAAACAACCAAATAGACTACATCGACAATGAAACTTTTCTGAGTTTGAGCAATCTGAAAAAGCTGTACCTGAATGAAAACAGGATAGGGAAAGTCTCTGCAACAATGTTTCTTGGCCTTCACAACCTGGAATATTTGTACTTGGAGCATAATGTCATCAAAGAGATCGAGGCTGGATCGTTCAACCCTTTGACAAATCTAAAGCTCCTGTTCCTAAATAACAATCGACTCAACACTCTCCCTGCACAAATATTTCGTAATGTGCCATTGGTGCAATTGAACCTAAGTAAAAATGTCTTGATGCACTTACCAGTGAGTAATGTGTTGGACCAGCTCAATTATTTGGAGCAAATTTATCTTGAGGACAATCCTTGGGACTGCACTTGTGATTTGGTCAGCCTCAAACAGTGGGTGGAAAAGCTTAGCAAAGACATCGTGGTGGGCGCCATCTTATGCCACACTCCTCAAAAACTGTCTACTGCTGATGTTAGAAACCTGAAGCATGATGCTCTCTGCCCTGGCTTGGTAACCTATGAGTCCACAGAGGGTGGTATCCCAGTCACGACTGCACCGGAAGGCGGCACCAGCAGCTTGTTCCGGTCCCTGACAGATGCGGTGCCACTATCGGTGCTCATCCTCTGCCTTCTCATCCTTTTACTGACCATCATTTTCTGTTCTGCCGGGATTGTCGTGTTTATGCTACACCGTCGCCGGAGACAGGCCAAAAAGAAACAGGCCGAGGAGCAACCTCGCGAGAGCAGTCCCATCCACCTGCACTACAGCATGTATGGCCAGAAAACCACCCACCACGTAACTGAAAGGCAAGGACCTAGCATGTACGACGAACCTTCCCGTAGCCCCATCGTTCAGGTCTGCAGGAACCCTAGTTACTGCTCTCAGCACAAAGAATACGAGTTAGATGACTACGACAGCGATAAACCTAAGCATATCTGCCATAGCATCCTTGAAAAGGACAACGAATCCCTCCCTAACGTGAAGTTCAGGGCCGTCACCGACTACCCTGCTGAGTTTGTGAGTTTGGGAGATGCGAACTCCTTGTACAAGAACATCTTAGAAAGGGAACGGGAGCGCCAACAGCTCAGCCTCACCGAATATCTCAGGAAAAACATATCACAGCTACAACCAGCTGTGGACAACATGCAAGTCCCCAACCACCACAAAGAGTTGAAACTAATGGAGACTCTCGTTTATACGAGGCCGAGGAAGGTCATGGTGGAACAGACTAAAAATGAGTACTTTGAGCTCAAAGCCAACTTACATGCCGAACCAGACTATTTAGAAGTCTTAGAGCATCAATCGACTTTCAACTGAGATAAGTACACATACTTTGATTTGACAAATGATACTTCAAGTGCCTTGACAGTCCATTCTAAGTTCTGATTTAGCCCGAGAGATATAATACAACAATGTCAGAGTAGAGGCAATTCTTATGATACAATCATTTGACGCTGACACAATGCCTAATTTCAGGTGGACCTTTAGCGTTAGCATGCTATTGGACATTACAGATGATGGATTATACATTCTAACACAATTTCAATCACACAGAAAGAGTCACAGAGTTACATCTTTGGACAAGATTGGCTTTGATACCAGAACATTTGTTTTGCATTGTGGTTAATGTATTCTCTTTATGTTTGCTACATGGTAGGGGAGACTAGCATAGAGTCACTTCACATTTCTATCTGTGTATCTCTTATTATGTATGTGACAGATCTTTAAGCTCTGTTTATTTGTAGCAATGGAAGAAAACATGTTTTCCTTCTTTTTTTTTTTCTGTCAGACAGAACATTTATGGTTAGTTAAAACATTCCCTGATTTGCTAAGCTTTGAATTAAACATGCCCAACACAGTTTTTGTTCATTAAATATTAAATAATGGTGGTACTTAGATCTCAAGATGTCTGAAAATTGCATTTATTA

Function

symbol description
slitrk6 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_01855614_01858092.mRNA True 3090 mRNA 0.44 1 1855614 1858703

Neighbor

gene id symbol gene type direction distance location
CI01000299_01197545_01215711 NA coding upstream 639625 1197422 ~ 1215989 (+)
CI01000299_01139684_01147241 NA coding upstream 708366 1139497 ~ 1147248 (+)
CI01000299_01049508_01055558 NA coding upstream 799878 1049390 ~ 1055736 (+)
CI01000299_01036243_01046776 NA coding upstream 808011 1035037 ~ 1047603 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 943642 862803 ~ 911972 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 258158 2116861 ~ 2121858 (+)
CI01000299_02195854_02198465 NA coding downstream 337095 2195798 ~ 2198925 (+)
CI01000299_02612562_02613926 NA coding downstream 753796 2612499 ~ 2614792 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding downstream 837929 2696632 ~ 2704220 (+)
CI01000299_02706136_02711943 STK16 coding downstream 847170 2705873 ~ 2713740 (+)
G404820 NA non-coding upstream 109733 1745642 ~ 1745881 (+)
G404738 NA non-coding upstream 155158 1700240 ~ 1700456 (+)
G404735 NA non-coding upstream 166613 1687879 ~ 1689001 (+)
G404716 NA non-coding upstream 223273 1631844 ~ 1632341 (+)
G404709 NA non-coding upstream 250931 1604343 ~ 1604683 (+)
G405052 NA non-coding downstream 158977 2017680 ~ 2018080 (+)
G405059 NA non-coding downstream 166085 2024788 ~ 2024993 (+)
G405066 NA non-coding downstream 170910 2029613 ~ 2029967 (+)
G405088 NA non-coding downstream 222547 2081250 ~ 2081510 (+)
G405095 NA non-coding downstream 230504 2089207 ~ 2089532 (+)
G403972 NA other upstream 1249264 604870 ~ 606350 (+)
G403609 NA other upstream 1444826 364139 ~ 410788 (+)
G403578 NA other upstream 1783343 35462 ~ 72271 (+)
G405609 NA other downstream 1295894 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 2272555 4131060 ~ 4133941 (+)
G405842 NA other downstream 2436830 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 2631115 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 2843679 4703071 ~ 4704780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000055 slitrk6 coding NC_007112.7 CM002885.2 4101741 ~ 4154332 (+)