CI01000299_06037407_06054548 (TPP2)


Basic Information

Item Value
gene id CI01000299_06037407_06054548
gene name TPP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6036217 ~ 6054548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06037407_06054548.mRNA
AAAGTCGCTTCGCTCTCGCGCACATTGTGTCGATACCGGTCAGTCGCTGTCGTGTTGTGTTTTCATTCTCGCTCTGTACGGTCATGTCTACTCATTCCGCTGAAGATCCGTTCCCGTTCCACGGGTTGCTTCCGAAAAAAGAGACCGGCGCTGCCTCGTTCCTCACCAAGTTTCCAGAGTACGATGGCCGAGGGGTGCTCATCGCGATCCTCGACACCGGGGTGGACCCAGGGGCCCCGGGCATGCAGACCACCACAGACGGGAAACCCAAGATCGTGGACATCATCGACACGACAGGCAGCGGCGATGTCAACATGTCCACCGTGGTGGAGGTGAAGGACGGGATCGTGGCCGGACTAACGGGACGCACACTCAAAATTCCTGCTGCTTGGGTGAATCCGTCTGGGAAGTATCACATCGGAATAAAGAACGGTTATGATTTTTTCCCTAAAGCTCTCAAAGAGAGAATACAGAAGGAGCGCAAGGAGAAGCTGTGGGATCCGGCACACAGAGCAGCTCTCGCTGAGGCCAGCCGCCGGATAGAAGAGTTTGACCAGACTCACCCGAACCCGTCACAGATGGAGAAACTACAGAAGGAGGAACTGCAGTGTCACATGGAGCTGTTGGGAACCCTGGAGAAGAAGTACAGTGATCCCGGGCCGGTTTATGACTGTGTGTCGTATCACGATGGCGTCACATGGAGGGCTGTGGTGGACACGTCTGAGACCGGAGACCTGTCGTCCTGCTCCGTCCTGAGCTCCTACAGAGAGAGACAGGAGTACGCCACGCTGGGATACGCCGAGATGCTCAATTACTCCGTCAACATCTACGACGAGGGAAACACGCTGTGTATCGTCACCAGCGGAGGAGCTCATGGGACACACGTCGCCAGCATCGCCGCGGGTCACTTCCCCGACGAGCCCGAGCGCAACGGCGTGGCCCCGGGAGCTCAGATCCTGGCTGTGAAGATAGGAGACACGCGCCTCAGCACCATGGAGACGGGCACCGGCCTCATACGAGCGATGATTGAAGTCGTAAACTATAAGTGTGATCTTGTGAACTACAGTTATGGGGAGGCGACACACTGGCCGAACTCAGGGAGAATCTGTGAGGTCATCACGGAGGCTGTACAGAAGTATAATGTTTTGTTTGTGTCGAGCGCTGGGAATAACGGCCCGTGTCTGTCCACCGTGGGCTGCCCCGGAGGAACGACCAGCAGCGTGATCGGTGTGGGCGCTTACGTCACCCCTGACATGATGGTGGCCGAATACTCCCTGAGAGAGAAGCTTCCTCCGAACCAGTACACGTGGTCGTCCCGCGGGCCCAGCACGGACGGAGCTCTGGGCGTCAGCATCAGCGCTCCCGGCGGAGCCATCGCCTCTGTTCCCAATTGGACGCTCCGCGGCACACAGCTGATGAACGGCACCTCCATGTCCTCGCCGAACGCCTGCGGAGGAATCGCGCTCGTGCTCTCAGGTTTGAAGCAGAACGGCGTGCGTCCCACGGTGCCGGCGGTGCGTCGGGCTCTGGAGAACACTGCTCTTAAAGTGGAGGATATAGAAGTGTTTGCGCAGGGCCACGGCATCATTCAGGTGGAGCGGGCGTTCGACTACCTCATGCAGCACGCGTCGCTGCCCACCAGTAGCCTCGGCTTCACCGTGACCGTAGGATCGCAGCGAGGCATCTACCTCAGGGACCCGACCCACGTCACCGGCCCGTCCGATCACAGCGTCGGCATTGAGCCTGTGTTTCCTGAGAACTCAGAGAACTCGGCCCGTATCTCTCTGCAGCTGCACCTGGCTCTCGTCTGCAACGCCACCTGGGTTCACTGTCCGTCGCACCTGGAGCTCATGAATCAGTGCCGCCACCTCAACGTGTGTGGATTCGACACGTCGGCTCTCAGCGCTGGTCCTCTCTTCAGAGTGCCTATAACGGTTATAATCCCTGCCAAAGTAGCTGATAGTCGCAGTCAGGAGGTCACGTTCACAGACGTCCACTTCAGACCAGGACAGATCCGACGGCATTTCATTACCGTCCCTCATGGAGCATCATGGGCAGAGATCTCATTAACGTCTCACTCTGGAGACGTGTCGTCGAAGTTCGTCCTGCATGCGGTTCATCTGGTGAAGCAGCGAGCATATCGAGCAAATGAGTTCTATAAGTTCTCGTCTCTGCTGGAGAAAGGCTCACTCACGGAGGCGTTTCCTGTGCTGCCAGGACGGACTCTGGAACTCTGTGTCGCTCGCTGGTGGGCGAGTCTCGGTGACGTCACCATTGATTATGTCATTTCCTTCCACGGGCTGGTGACATCACCCTCGCCTATTCATATTCACGCCTCTGAAGGGATTTCTAGTTTTGAGGTCTGGTCTCCATTGAGATATGAAGACGTTTCCCCAACAATCACATTGAAGAATTGGGTTCAGCCCCTCAGGCCTGTGAGCGCTAAAATCAAACCCCTCGGCCTCAGAGATGTGTTACCCAACAACAGACAGCTCTATGAGATCGTCCTCACATATAATTTCCATCAGCCCAAGAGTGGCGAGGTGACGCCCAGCTGTCCGCTGCTGTGTGAGTTATTATACGAGTCTGAGTTTGACAGTCAGCTCTGGCTCCTGTTCGACCAGAACAAGAGACTCATGGGTTCTGGAGACGCCTACCCACACCAGTACTCTCTGAAGCTGGAGAAGGGCGACTACACGGTGCGTCTGCAGGTGCGTCACGAGCAGCAGAGCGAGCTGGAGCGTCTGAAGGACCTGCCGTTCGTCGTCTCGCACCGTCTCTCCAACACCCTCTCGCTGGACGTCTACGAGACGCACCGCGCCGCCATGCTGGCCAAGAAGAAGGCCAACTCCGTCACGCTGAGCCCCGGCGCCTCGCAGCCCTTCTACGTCACCGCTCTGCCTGATGACAAGATCCCTAAAGGTGCAGGTCCGGGCGGATACATCACCGGCTCTCTGGTTCTGCCCAAGAGTGAGTTCGGCAAAAAAGCAGTGAGTCGGCAGTTTCTTCAAACACAGTGTTCATTCAGCGCATCTGTAGATCTGCATGCTGCCGCTTCGCTTCCATCAGCCCTTGTTTCTGCTGGAAATACAACAGCAAGATGTTTTGTATACTCGATTAATCATGTGTTAATGCATTATAATCCAATAAATGACACCCTGTGCAATTATTTAAGACAAGACTCTGCAGTTAACGCTGCTGTGGTCAGGTTGGACAGCAGCTCGCTGTACGAGGAGCTGAAGGAGATGTTCCCCACACACCTGCCGCTGCACGTCCAGAGACTCCATCAGCTGGACTCAGAGAAGGAGCGTCTGAAGCGGCTGGGAGAGATCGCGGCTGCGGCGGATACGGTGATGTCACACATTGACCAGACTGCACTGGCCGTTTACCTCACTATGAAGACGGACCCGCGGCCGGACGCCACCGCCATCAAGAGTGACATGGAGAAGCAGAAGTCGTCTCTGCTGGACGCTCTGTGCAGGAAGGGCTGCGCTCTGGCGGATCAGCTGATGCAGCCGGCGGCACAGGATGGTGCCAGCGCCGGTGAGGTGGGCAGCTCTGATGACGATCCGCAGGGCGTGGCCAAAGCTTTGACTGACACCTTCTGGGAGGTGCAGAAGTGGGCGGAGCTCACTGACTCTAAGATGAGTGATGGCTGTGAATGTGTCCGTCTCCTGCAGCTGCTGCGATCTCTCGGCTGGATTCACTGCGTCTCCTACACGGAGAACTGGCTGCCCATCATGTTCCCGTCTGACTACACGCCCTTCTAACACACTCACTAATGCAGTTTTTAACTGAGGGGACTTTTAATGCCTTCTGGAAACCATCAGAAACCAAACACCTCATATCACACGGATCCCACAATGCCTTCCTGCGTGTGGATCTCTGCACATCACCGCACTGAACCCACAGTTTGTATCATATCTGTGTGTTTCACTCTTCAGCGTTCATCTTATAATAACCTGCATTCTGTTATTTGAAATGTGATTACTGGGCGTTTGCTCGGTGGACATTTTATATAAGGCAAATATATAAGGCAATATGATGGACGCCTGGTTGAGTTCTGTGGGTGAAATGTCCATATTTTACTCCAGAATCAAAAGAATATATAATTTCTTAGTCTTTTCTCTTTTTTTTAAATTTTGGGGGTGAGATTTGTTTGTTGTTTTTGTGATTGACCCCTGATGTATGTCAAATGTATGCATGTTTTATAAGGACACAAGGGTCATTTTATGTTCATGACTTTCGATTATGTGCCGTTCTGAAGATTTTGTGTGATTGAAAGTCGTCCATCTTCAGTTTTCTCTCATTCTGAGCCTGGACTCGAACACTTTTTGTCGTGAGATTATCACACGTTTAAACATGTTCACTCATCTTGTATGTCTTGAACTTCATTCAGGGTTTAGACATTGAAAACAGATTAAACTCACCGTTTTGAAAGGTGAGGAACTTTCAAAAGAAACGAAGCCAGCAATTCATGCTACAGTTTTTCACTAGTACACCGTGTCAAAGGATCCAGTACCTCCAGACGCCATGTCACATCCTGCTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATCATGCATGTTTGTGTTGTTTGTTCAGGGCTCGAGGCGTTTCCAATGACAGGTTCTTCAAAAAATGGCCTTAAATATTCACAATCTTCAACCCCCGTCCACCTCTGCGTTTCTTCAGGAAATATCACATTATTCTGTATCAAAAACCCTTGAATATCTTCAGATATATTTATGGATGTCTTGTATTTATAAAGTATAAATGAATACTAGGTAATGCCAATATTTTAAAGTCATTTTAATTCATGCATAGAGTAGGTAGGTGTTATTTTATATCCATTACTCCTCGTGAGACGTTTCAGAAGTAACAGCCGGTTATTTTGTTAAAACGGTAAATGTGCTGAACAGTGTATTTGATGAAGATTCTGAATAAA

Function

symbol description
tpp2 Predicted to enable tripeptidyl-peptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human TPP2 (tripeptidyl peptidase 2).

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01280 TPP2; tripeptidyl-peptidase II

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06037407_06054548.mRNA True 4960 mRNA 0.52 27 6036217 6054548

Neighbor

gene id symbol gene type direction distance location
CI01000299_05974659_05985294 NA coding downstream 50611 5974391 ~ 5985606 (-)
CI01000299_05946615_05949088 NA coding downstream 86983 5946333 ~ 5949234 (-)
CI01000299_05927821_05933216 BLZF1 coding downstream 101385 5927314 ~ 5934832 (-)
CI01000299_05919510_05924061 TXNL4B, TXNL4B.S coding downstream 111589 5919128 ~ 5924628 (-)
CI01000299_05896205_05898855 NA coding downstream 137360 5896043 ~ 5898857 (-)
CI01000299_06130943_06144384 NA coding upstream 74525 6129073 ~ 6144868 (-)
CI01000299_06145156_06154533 NA coding upstream 90407 6144955 ~ 6154533 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding upstream 130940 6185488 ~ 6195015 (-)
CI01000299_06197276_06199730 TFDP1 coding upstream 142058 6196606 ~ 6199730 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 154064 6208612 ~ 6214104 (-)
G407810 NA non-coding downstream 5232 6030276 ~ 6030985 (-)
G407885 NA non-coding downstream 9892 6026115 ~ 6026325 (-)
G407884 NA non-coding downstream 10415 6025025 ~ 6025802 (-)
G407881 NA non-coding downstream 12553 6018542 ~ 6023664 (-)
G407825 NA non-coding downstream 66661 5963680 ~ 5969556 (-)
G407829 NA non-coding upstream 32616 6087164 ~ 6088221 (-)
G407967 NA non-coding upstream 33954 6088502 ~ 6088726 (-)
G407949 NA non-coding upstream 36943 6091491 ~ 6091881 (-)
G407909 NA non-coding upstream 38743 6093291 ~ 6099458 (-)
G407912 NA non-coding upstream 45300 6099848 ~ 6107253 (-)
G407805 NA other downstream 200228 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 580109 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1107399 4913373 ~ 4927715 (-)
G407413 NA other downstream 1485496 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 477453 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000019 tpp2 coding NC_007112.7 CM002885.2 418869 ~ 443759 (+)
bowfin (Amia calva) AMCG00014444 tpp2,LOC107665822 coding CM030128.1 CM030128.1 14085512 ~ 14105494 (+)