CI01000299_06185794_06195015 (GRK1A, GRK1)


Basic Information

Item Value
gene id CI01000299_06185794_06195015
gene name GRK1A, GRK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6185488 ~ 6195015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06185794_06195015.mRNA
GTTTTTATTTACCATTGAGCAAGTGATGGTTCTCACTCCTCCATCAGTGAAGGGCTTTATCCTGAGGAAGGTCCACGTTCACCTCCTTCACCTCGACATGGACATCGGCGGCCTGACTACGGTGGTGGCCAACTCGGCGTACATCTCGGCCCGCGGCAGTTTCGACGGCACAGCCAACCCGGCGGCCAACCGAGACAAGAAGTACCACGACAAGCTCAAGCTGCCCCACATCACGTTGTGCGAAGATCTGCGAGAAACCCTGGATCTGCAGTTCAAGAGCATCTGCGTGGAGCAACCCATCGGAAAACGGCTGTTTCAAGAGTACCTGGAAACCACCAGCGAGTACAAGGGCCCGAGTCGTCTCTGGAAGGACGTGGAGGCGTACGACACGGCCGAGGATAAGGATCGAGTTCAGAAAGCCACGAAAATCCTCCAGCGCTACATGGAGCCCTCAGCCAAGCTCTTCTGCCCGTTTTTACCCGAGAACGACATCACCAAGGTGAAGGAACGACACCAGGAGGCGGCGGACGACCTGTTCGTGGAGATCCAGGCCAGCGTCTTCAACTTCCTTAAAGAGGTTCCCTTCACCTTCTATCTAGAGACCATGTACTTTAAGCGCTTCTTGCAGTGGAAGTGGCTGGAGATGCAGCCCATAGGTGAGGACTGGTTCCTGGACTTCCGTGTTCTGGGAAAAGGTGGATTCGGGGAAGTGTCCGCCTGTCAGATGAAGGCCACAGGGAAGCTGTACGCCTGCAAGAAACTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGAGCCATGGTGGAGAAACGGATCCTGGCTCGAGTTCACAGTAGATTCATCGTGTCGCTGGCGTACGCCTTCCAGACCAGAACAGAGCTGTGTCTCGTCATGACCATCATGAACGGAGGAGACCTGAGGTATCACATCTATAACGTGGACGAGAATAACCCCGGGTTCTCTGAGGCCAGAGCCTGTTATTACGCTGCTCAGATCATCCAGGGCATGGAGCATCTCCACCAGAAGAGAATCATCTACAGAGACCTGAAACCAGAGAACGTCCTGCTGGATAATGAAGGGAACGTCCGGATCTCAGATCTCGGTCTGGCGGTGGAACTCGCAGACGGTCAGGAGAAAATCAAAGGCTACGCTGGAACACCAGGGTTCATGGCCCCGGAGCTGCTGAAGGGCGAGGAGTACGATTACTCCGTGGATTACTTCACTCTCGGGGTCACGCTGTACGAGTTCATCGCCGCTAAAGGACCCTTCAGGACTCGAGGAGAGAAGCCGCTGATGTTCTTGACTGTTTGTGCTGCTCAGGTGGAGAATAAAGAGGTGAAGAAGCGGATCCTGAACGACCCCGTGACCTACTCAGAGAAGTTCAGTGAGAACGCCAAGTCCATCTGTGAAGCTCTGCTGGCCAAAGAGGTGGACAAGAGACTGGGCTTCAAGAACGGCACGTGTGACGAGCTCCGCGCTCATCCGTTCTTCAGCGAACTCAACTGGAGGAAACTCGACGCAGGGATTCTGCCGCCTCCTTTCGTCCCTGATTCCAAGACCGTCTACGCCAAGGATCTGGACGACGTGGGCGCGTTCTCCACGGTGAAGGGGGTCGGCCTGGAGGACGACGACAAGGTGTTCTTCGACGAGTTTGCGTCAGGAAACATCTCCATCCCGTGGCAGGAGGAGATGATCGAGACTGGCATCTTCGGCGAGCTGAACGTGTGGGGTCCGAACGGAACGGTGCCCAACGACCTGCGCCGGGAGTCCATCCTGGAGCAGCCGCCGCCCAAATCCTCCACCTGCAGCGTCTCATAGTCACACGGGCGCAGAACTGTACTGATCACAACCACATTTACTTCCAGCTTCAGCTATTTTAAAGGGGGCGTCGCTGTCAGTATTTACAGTAGTGATTATTGATTTTGAGTTTATTGAACCATAAACTGAGTTCCAGCGCTCAGTGAGTTTACATGCACTCTTCTGTTCAAGCATGACTCGCATTAGGCTTCTAAACAGAATATCTAAGAATGAGGAAAGAATAGAGGGAAACGCTTTGCAGTCGTCTTTTTGACATCCATACAGGTCAGTGAGTGATAAAAACAACCGTATGTGAAATTAAATAAA

Function

symbol description
grk1a Enables rhodopsin kinase activity. Predicted to be involved in protein phosphorylation and regulation of signal transduction. Predicted to act upstream of or within several processes, including phosphorylation; regulation of rhodopsin mediated signaling pathway; and visual perception. Predicted to be active in cytoplasm. Is expressed in epiphysis; eye; retinal photoreceptor layer; and retinal rod cell. Human ortholog(s) of this gene implicated in Oguchi disease-2 and night blindness. Orthologous to human GRK1 (G protein-coupled receptor kinase 1).
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06185794_06195015.mRNA True 2131 mRNA 0.53 8 6185488 6195015

Neighbor

gene id symbol gene type direction distance location
CI01000299_06145156_06154533 NA coding downstream 30955 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 40620 6129073 ~ 6144868 (-)
CI01000299_06037407_06054548 TPP2 coding downstream 130940 6036217 ~ 6054548 (-)
CI01000299_05974659_05985294 NA coding downstream 199882 5974391 ~ 5985606 (-)
CI01000299_05946615_05949088 NA coding downstream 236254 5946333 ~ 5949234 (-)
CI01000299_06197276_06199730 TFDP1 coding upstream 1591 6196606 ~ 6199730 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 13597 6208612 ~ 6214104 (-)
CI01000299_06242885_06246604 LAMP1 coding upstream 46981 6241996 ~ 6246604 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 60842 6255857 ~ 6266210 (-)
CI01000299_06268189_06268676 NA coding upstream 73174 6268189 ~ 6269395 (-)
G407975 NA non-coding downstream 1953 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 39564 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 70998 6108478 ~ 6114490 (-)
G407912 NA non-coding downstream 78235 6099848 ~ 6107253 (-)
G407909 NA non-coding downstream 86030 6093291 ~ 6099458 (-)
G407923 NA non-coding upstream 25751 6220766 ~ 6222379 (-)
G407939 NA non-coding upstream 31397 6226412 ~ 6232275 (-)
G407986 NA non-coding upstream 194361 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 197029 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 222111 6417126 ~ 6432767 (-)
G407805 NA other downstream 349499 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 729380 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1256670 4913373 ~ 4927715 (-)
G407413 NA other downstream 1634767 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 336986 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000016 grk1a coding NC_007112.7 CM002885.2 245076 ~ 258138 (+)